Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9SWD85 Arachis hypogaea HOM05D006109 ORTHO05D007647 3.6e-97 358.2 178 100.0
arahy.Tifrunner.gnm1.ann1.RE4L3J Arachis hypogaea HOM05D006109 ORTHO05D007647 3.3e-90 335.1 178 95.5
arahy.Tifrunner.gnm1.ann1.Z1T37B Arachis hypogaea HOM05D006109 ORTHO05D007647 9.5e-90 333.6 178 93.3
arahy.Tifrunner.gnm1.ann1.N0D599 Arachis hypogaea HOM05D006109 ORTHO05D007647 8.0e-89 330.5 178 92.7
arahy.Tifrunner.gnm1.ann1.NAGP4P Arachis hypogaea HOM05D006109 ORTHO05D007647 1.6e-76 289.7 164 90.9
arahy.Tifrunner.gnm1.ann1.MW1879 Arachis hypogaea HOM05D006109 ORTHO05D007647 4.3e-66 255.0 183 75.4
Phvul.004G149800 Phaseolus vulgaris HOM05D006109 ORTHO05D007647 7.8e-60 234.2 178 70.2
VMungo0464G1588 Vigna mungo HOM05D006109 ORTHO05D007647 2.3e-59 232.6 179 69.3
Glyma.19G115400 Glycine max HOM05D006109 ORTHO05D007647 1.3e-57 226.9 178 66.9
Lalb_Chr10g0093951 Lupinus albus HOM05D006109 ORTHO05D007647 4.8e-57 224.9 185 67.0
Glyma.19G061900 Glycine max HOM05D006109 ORTHO05D007647 6.9e-56 221.1 178 65.7
CSS0036441 Camellia sinensis var. sinensis HOM05D006109 ORTHO05D007647 3.8e-54 215.3 163 70.6
MD09G1030300 Malus domestica HOM05D006109 ORTHO05D007647 1.4e-53 213.4 158 71.5
Ca_06582_v3 Cicer arietinum L. HOM05D006109 ORTHO05D007647 1.9e-53 213.0 178 64.6
Lj1g0027893 Lotus japonicus HOM05D006109 ORTHO05D007647 1.9e-53 213.0 176 63.6
Eucgr.I01778 Eucalyptus grandis HOM05D006109 ORTHO05D007647 2.4e-53 212.6 161 67.7
CSS0045399 Camellia sinensis var. sinensis HOM05D006109 ORTHO05D007647 9.3e-53 210.7 138 76.8
Hma1.2p1_0993F.1_g245320 Hydrangea macrophylla HOM05D006109 ORTHO05D007647 9.3e-53 210.7 163 68.1
Dinv35082 Davidia involucrata HOM05D006109 ORTHO05D007647 1.6e-52 209.9 154 70.8
Cfa007410 Carpinus fangiana HOM05D006109 ORTHO05D007647 4.6e-52 208.4 133 77.4
Haze_14694 Corylus avellana HOM05D006109 ORTHO05D007647 4.6e-52 208.4 133 77.4
Prupe.3G287100 Prunus persica HOM05D006109 ORTHO05D007647 4.6e-52 208.4 180 65.0
Actinidia06012 Actinidia chinensis HOM05D000487 ORTHO05D007647 7.9e-52 207.6 173 65.3
Sed0024403 Sechium edule HOM05D006109 ORTHO05D007647 7.9e-52 207.6 162 66.0
GSVIVG01032450001 Vitis vinifera HOM05D006109 ORTHO05D007647 7.9e-52 207.6 151 70.9
CiPaw.03G040100 Carya illinoinensis HOM05D006109 ORTHO05D007647 1.0e-51 207.2 182 63.7
FAN02G3346 Fragaria x ananassa HOM05D006109 ORTHO05D007647 3.9e-51 205.3 127 78.0
ClCG10G014090 Citrullus lanatus HOM05D006109 ORTHO05D007647 5.1e-51 204.9 161 67.7
FAN09G4447 Fragaria x ananassa HOM05D006109 ORTHO05D007647 5.1e-51 204.9 174 62.6
RcHm_v2.0_Chr2g0172351 Rosa chinensis HOM05D006109 ORTHO05D007647 6.7e-51 204.5 130 76.9
QL02p075892 Quercus lobata HOM05D006109 ORTHO05D007647 8.7e-51 204.1 131 77.9
TAR629G1761 Trochodendron aralioides HOM05D006109 ORTHO05D007647 8.7e-51 204.1 189 60.8
Nn4g22741 Nelumbo nucifera HOM05D006109 ORTHO05D007647 1.1e-50 203.8 149 68.5
Atru.chr6.2325 Acer truncatum HOM05D006109 ORTHO05D007647 1.5e-50 203.4 162 63.6
Duzib187G0986 Durio zibethinus HOM05D006109 ORTHO05D007647 1.5e-50 203.4 164 64.6
FvH4_6g50950 Fragaria vesca HOM05D006109 ORTHO05D007647 1.5e-50 203.4 145 69.7
Ciclev10016231m.g Citrus clementina HOM05D006109 ORTHO05D007647 1.9e-50 203.0 150 70.0
FAN14G3710 Fragaria x ananassa HOM05D006109 ORTHO05D007647 3.3e-50 202.2 127 75.6
Rhsim10G0019600 Rhododendron simsii HOM05D006109 ORTHO05D007647 9.6e-50 200.7 117 81.2
Medtr7g035310 Medicago truncatula HOM05D006109 ORTHO05D007647 1.3e-49 200.3 171 64.9
vmacro05842 Vaccinium macrocarpon HOM05D006109 ORTHO05D007647 1.3e-49 200.3 130 76.9
CsaV3_3G042570 Cucumis sativus L. HOM05D006109 ORTHO05D007647 1.6e-49 199.9 127 78.0
TPR.G9075 Trifolium pratense HOM05D006109 ORTHO05D007647 1.6e-49 199.9 120 80.0
MELO3C009968.2 Cucumis melo HOM05D006109 ORTHO05D007647 3.7e-49 198.7 127 78.0
THA.LOC104822396 Tarenaya hassleriana HOM05D006109 ORTHO05D007647 3.7e-49 198.7 161 65.8
Gohir.D10G087300 Gossypium hirsutum HOM05D006109 ORTHO05D007647 6.2e-49 198.0 136 72.1
Gorai.011G095500 Gossypium raimondii HOM05D006109 ORTHO05D007647 6.2e-49 198.0 136 72.1
MBI16_g27082_MAGBIO Magnolia biondii HOM05D006109 ORTHO05D007647 6.2e-49 198.0 133 72.2
Psat3g166600 Pisum sativum HOM05D006109 ORTHO05D007647 6.2e-49 198.0 175 59.4
Thecc.04G012100 Theobroma cacao HOM05D006109 ORTHO05D007647 6.2e-49 198.0 136 71.3
COL.COLO4_29012 Corchorus olitorius HOM05D006109 ORTHO05D007647 1.4e-48 196.8 151 66.9
Manes.17G113300 Manihot esculenta HOM05D006109 ORTHO05D007647 1.4e-48 196.8 154 67.5
Sabra16G0226300 Salix brachista HOM05D006109 ORTHO05D007647 1.4e-48 196.8 133 75.2
CANSAT64G2896 Cannabis sativa HOM05D006109 ORTHO05D007647 1.8e-48 196.4 130 74.6
DCAR_011234 Daucus carota HOM05D006109 ORTHO05D007647 1.8e-48 196.4 152 66.4
Potri.001G346700 Populus trichocarpa HOM05D006109 ORTHO05D007647 1.8e-48 196.4 114 84.2
Gohir.A10G103100 Gossypium hirsutum HOM05D006109 ORTHO05D007647 3.1e-48 195.7 136 71.3
Cpa.g.sc108.27 Carica papaya HOM05D006109 ORTHO05D007647 1.2e-47 193.7 121 80.2
MD17G1032100 Malus domestica HOM05D006109 ORTHO05D007647 1.2e-47 193.7 158 64.6
MSTRG.3294 Avicennia marina HOM05D006109 ORTHO05D007647 7.6e-47 191.0 155 63.9
Lsat_1_v5_gn_2_91661 Lactuca sativa HOM05D000487 ORTHO05D007647 7.6e-47 191.0 134 73.9
Sc16g0003340 Simmondsia chinensis HOM05D006109 ORTHO05D007647 7.6e-47 191.0 126 73.8
ECA238G0132 Erigeron canadensis HOM05D006109 ORTHO05D007647 9.9e-47 190.7 115 80.0
Nitab4.5_0008215g0030 Nicotiana tabacum HOM05D006109 ORTHO05D007647 1.3e-46 190.3 155 63.2
ATR1091G073 Amborella trichopoda HOM05D006109 ORTHO05D007647 2.2e-46 189.5 121 72.7
Cc00_g04250 Coffea canephora HOM05D006109 ORTHO05D007647 2.2e-46 189.5 117 77.8
PGR142G0249 Punica granatum HOM05D006109 ORTHO05D007647 2.2e-46 189.5 166 63.3
HPP92_016020 Vanilla planifolia HOM05D006109 ORTHO05D007647 2.9e-46 189.1 127 71.7
HPP92_016034 Vanilla planifolia HOM05D006109 ORTHO05D007647 2.9e-46 189.1 127 71.7
Sp6g29380 Schrenkiella parvula HOM05D006109 ORTHO05D007647 3.8e-46 188.7 115 77.4
Hund06951 Selenicereus undatus HOM05D006109 ORTHO05D007647 3.8e-46 188.7 127 69.3
C09p62480 Brassica napus HOM05D006109 ORTHO05D007647 4.9e-46 188.3 119 77.3
BolC9t59085H Brassica oleracea HOM05D006109 ORTHO05D007647 4.9e-46 188.3 119 77.3
HanXRQChr14g0450421 Helianthus annuus HOM05D006109 ORTHO05D007647 4.9e-46 188.3 186 60.2
BraA10t44464Z Brassica rapa HOM05D006109 ORTHO05D007647 6.4e-46 188.0 119 77.3
EL10Ac4g09089 Beta vulgaris HOM05D006109 ORTHO05D007647 8.4e-46 187.6 131 70.2
Nitab4.5_0002739g0120 Nicotiana tabacum HOM05D006109 ORTHO05D007647 1.1e-45 187.2 156 62.2
A10p24010 Brassica napus HOM05D006109 ORTHO05D007647 1.9e-45 186.4 119 76.5
Migut.K01380 Erythranthe guttata HOM05D006109 ORTHO05D007647 1.9e-45 186.4 134 64.9
Sopen02g031440 Solanum pennellii HOM05D006109 ORTHO05D007647 3.2e-45 185.7 179 57.0
Lj7A594G50 Lonicera japonica HOM05D006109 ORTHO05D007647 4.2e-45 185.3 159 63.5
Carub.0006s1283 Capsella rubella HOM05D006109 ORTHO05D007647 5.5e-45 184.9 137 69.3
Solyc02g086680.4 Solanum lycopersicum HOM05D006109 ORTHO05D007647 1.2e-44 183.7 179 56.4
PGSC0003DMG400000518 Solanum tuberosum HOM05D006109 ORTHO05D007647 1.2e-44 183.7 180 57.2
AUR62032756 Chenopodium quinoa HOM05D006109 ORTHO05D007647 2.7e-44 182.6 109 80.7
CARHR198660 Cardamine hirsuta HOM05D006109 ORTHO05D007647 6.0e-44 181.4 165 60.6
AUR62001047 Chenopodium quinoa HOM05D006109 ORTHO05D007647 6.0e-44 181.4 109 79.8
Thhalv10014367m.g Eutrema salsugineum HOM05D006109 ORTHO05D007647 6.0e-44 181.4 119 73.9
CAN.G206.14 Capsicum annuum HOM05D006109 ORTHO05D007647 7.9e-44 181.0 116 74.1
Aqoxy3G01052 Aquilegia oxysepala HOM05D006109 ORTHO05D007647 1.3e-43 180.3 194 52.1
AT5G14660 Arabidopsis thaliana HOM05D006109 ORTHO05D007647 2.3e-43 179.5 119 73.1
Aa31LG11G14800 Aethionema arabicum HOM05D006109 ORTHO05D007647 3.0e-43 179.1 168 60.1
AL6G25430 Arabidopsis lyrata HOM05D006109 ORTHO05D007647 6.7e-43 177.9 136 67.6
CDE02G3642 Ceratophyllum demersum HOM05D006109 ORTHO05D007647 8.7e-43 177.6 126 69.8
Os01g0637600 Oryza sativa ssp. japonica HOM05D006109 ORTHO05D007647 1.9e-42 176.4 141 63.8
SalBow5G0229 Salvia bowleyana HOM05D006109 ORTHO05D007647 1.9e-42 176.4 173 54.9
SalBow7G1007 Salvia bowleyana HOM05D006109 ORTHO05D007647 1.9e-42 176.4 173 54.9
SalBow5G1807 Salvia bowleyana HOM05D006109 ORTHO05D007647 2.5e-42 176.0 173 54.3
Os01g0636600 Oryza sativa ssp. japonica HOM05D006109 ORTHO05D007647 2.1e-41 172.9 118 70.3
unitig_748.g8596 Utricularia gibba HOM05D006109 ORTHO05D007647 2.1e-41 172.9 110 71.8
SGA_v2.0_scaffold30G12428 Striga asiatica HOM05D006109 ORTHO05D007647 2.8e-41 172.6 145 59.3
Zm00001eb359100 Zea mays HOM05D006109 ORTHO05D007647 3.7e-41 172.2 141 60.3
Mapoly0058s0077 Marchantia polymorpha HOM05D006109 ORTHO05D007647 3.2e-37 159.1 111 64.0
AagrBONN_evm.TU.Sc2ySwM_228.925 Anthoceros agrestis HOM05D006109 ORTHO05D007647 4.6e-36 155.2 108 65.7
Pp3c24_20 Physcomitrium patens HOM05D006109 ORTHO05D007647 5.1e-35 151.8 110 61.8
CBR_g10865 Chara braunii HOM05D006109 ORTHO05D007647 1.6e-33 146.7 120 55.8
CBR_g11073 Chara braunii HOM05D006109 ORTHO05D007647 1.1e-32 144.1 126 52.4
SMO347G0147 Selaginella moellendorffii HOM05D006109 ORTHO05D007647 2.4e-32 142.9 110 61.8
SGA_v2.0_scaffold30G12431 Striga asiatica HOM05D006109 ORTHO05D007647 2.0e-31 139.8 105 63.8
MCO01G286 Micromonas commoda HOM05D006109 ORTHO05D007647 2.2e-30 136.3 137 48.9
PRCOL_00005209 Prasinoderma coloniale HOM05D006109 ORTHO05D007647 5.0e-30 135.2 120 50.0
SHI22178 Sapria himalayana HOM05D006109 ORTHO05D007647 6.5e-30 134.8 109 59.6
Cre01.g039750 Chlamydomonas reinhardtii HOM05D006109 ORTHO05D007647 1.3e-27 127.1 122 48.4
Sabra16G0225600 Salix brachista HOM05D006109 ORTHO05D007647 1.7e-25 120.2 91 64.8
Peaxi162Scf00129g01227 Petunia axillaris HOM05D006109 ORTHO05D007647 1.5e-23 113.6 71 74.6
AUR62004904 Chenopodium quinoa HOM05D006109 ORTHO05D007647 2.0e-23 113.2 64 82.8
HPP92_016014 Vanilla planifolia HOM05D006109 ORTHO05D007647 7.7e-23 111.3 71 74.6
SalBow5G4602 Salvia bowleyana HOM05D006109 ORTHO05D007647 1.4e-21 107.1 68 70.6
SMO111G0178 Selaginella moellendorffii HOM05D006109 ORTHO05D007647 4.2e-21 105.5 88 59.1
SMO347G0426 Selaginella moellendorffii HOM05D006109 ORTHO05D007647 1.4e-19 100.5 83 61.4
HPP92_016006 Vanilla planifolia HOM05D006109 ORTHO05D007647 5.7e-18 95.1 78 62.8
HPP92_016029 Vanilla planifolia HOM05D000526 ORTHO05D000956 2.2e-14 83.2 52 71.2
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 3.8e-14 82.4 47 76.6
Cre01.g039650 Chlamydomonas reinhardtii HOM05D006109 ORTHO05D007647 2.7e-12 76.3 63 54.0
SalBow5G2697 Salvia bowleyana HOM05D006109 ORTHO05D007647 1.4e-11 73.9 55 58.2
Oeu043040.1 Olea europaea HOM05D006109 ORTHO05D007647 2.6e-10 69.7 44 81.8
CSS0029342 Camellia sinensis var. sinensis HOM05D006109 ORTHO05D007647 4.4e-10 68.9 48 66.7
SMO347G0192 Selaginella moellendorffii HOM05D006109 ORTHO05D007647 9.7e-10 67.8 56 58.9
CSS0016858 Camellia sinensis var. sinensis HOM05D006109 ORTHO05D007647 1.3e-09 67.4 47 66.0
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 3.7e-09 65.9 85 40.0
SMO347G0494 Selaginella moellendorffii HOM05D006109 ORTHO05D376131 8.2e-09 64.7 58 53.4
Solyc07g015860.3 Solanum lycopersicum HOM05D004745 ORTHO05D005626 1.7e-06 57.0 153 28.1
Aa31LG7G150 Aethionema arabicum HOM05D004745 ORTHO05D005626 2.2e-06 56.6 161 28.0
Gorai.011G081700 Gossypium raimondii HOM05D004745 ORTHO05D005626 3.8e-06 55.8 193 27.5
ATR1156G012 Amborella trichopoda HOM05D004745 ORTHO05D005626 5.0e-06 55.5 117 29.9
CARHR015930 Cardamine hirsuta HOM05D004745 ORTHO05D005626 5.0e-06 55.5 153 30.1
Cfa001995 Carpinus fangiana HOM05D004745 ORTHO05D005626 5.0e-06 55.5 117 29.9
Cc04_g04150 Coffea canephora HOM05D004745 ORTHO05D005626 5.0e-06 55.5 168 28.0
Lalb_Chr14g0373711 Lupinus albus HOM05D004745 ORTHO05D005626 5.0e-06 55.5 144 26.4
CSS0020299 Camellia sinensis var. sinensis HOM05D004745 ORTHO05D005626 6.5e-06 55.1 118 29.7
DCAR_025491 Daucus carota HOM05D004745 ORTHO05D005626 6.5e-06 55.1 117 30.8
CANSAT56G2452 Cannabis sativa HOM05D004745 ORTHO05D005626 8.5e-06 54.7 117 29.1
MBI04_g07638_MAGBIO Magnolia biondii HOM05D004745 ORTHO05D005626 8.5e-06 54.7 118 28.8


User provided reference genes

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