Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 6.8e-222 773.9 440 100.0
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 1.2e-199 699.9 440 90.7
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 1.6e-125 453.8 325 82.8
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 2.8e-119 433.0 326 80.1
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 1.5e-115 420.6 326 79.4
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 9.2e-110 401.4 290 81.7
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 3.5e-109 399.4 306 79.1
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 1.3e-108 397.5 287 82.6
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 1.9e-107 393.7 307 78.5
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 5.6e-107 392.1 365 67.4
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 2.9e-103 379.8 333 70.6
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 4.9e-103 379.0 368 67.7
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 3.2e-102 376.3 267 83.5
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 5.4e-102 375.6 333 69.7
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 2.0e-101 373.6 332 69.9
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 7.8e-101 371.7 332 69.9
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 1.7e-100 370.5 332 72.3
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 2.3e-100 370.2 339 67.3
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 1.1e-99 367.9 299 74.6
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 3.3e-99 366.3 334 71.3
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 2.1e-98 363.6 336 67.0
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 8.0e-98 361.7 335 70.7
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.4e-97 360.9 335 69.3
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 4.0e-97 359.4 333 68.8
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 6.8e-97 358.6 331 68.9
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 3.4e-96 356.3 335 66.3
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.4e-96 356.3 297 73.1
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 4.4e-96 355.9 332 68.4
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 1.3e-95 354.4 332 69.9
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 2.2e-95 353.6 356 63.8
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 2.9e-95 353.2 296 72.3
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 4.9e-95 352.4 333 65.5
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 1.9e-94 350.5 368 62.5
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.9e-94 350.5 334 65.9
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 7.1e-94 348.6 331 67.1
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 7.1e-94 348.6 306 70.9
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 1.6e-93 347.4 333 65.8
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.7e-93 346.7 306 70.6
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 2.7e-93 346.7 348 63.8
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 3.0e-92 343.2 299 72.2
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 3.0e-92 343.2 314 68.8
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 1.5e-91 340.9 344 65.1
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 2.5e-91 340.1 334 69.2
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.6e-90 337.4 332 66.0
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 3.6e-90 336.3 343 66.8
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 4.7e-90 335.9 336 65.2
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 4.7e-90 335.9 317 68.1
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 2.3e-89 333.6 350 65.4
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 2.2e-87 327.0 291 69.8
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 4.9e-87 325.9 294 68.0
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 8.3e-87 325.1 332 64.2
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.4e-86 324.3 297 67.7
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 5.4e-86 322.4 334 63.5
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 1.2e-85 321.2 323 63.8
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 1.0e-84 318.2 326 63.5
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 1.3e-84 317.8 335 60.9
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.7e-84 317.4 334 64.1
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 7.3e-83 312.0 335 62.1
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 2.8e-82 310.1 348 56.9
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 3.4e-80 303.1 340 59.4
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 4.4e-80 302.8 333 60.4
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 2.9e-79 300.1 286 65.4
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 1.4e-78 297.7 289 65.1
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 5.4e-78 295.8 243 71.2
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 1.3e-76 291.2 289 63.0
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.3e-76 290.4 290 62.4
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 2.3e-76 290.4 353 58.4
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 5.1e-76 289.3 289 62.6
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 1.3e-74 284.6 323 57.3
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.6e-74 284.3 290 61.4
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 1.6e-74 284.3 323 57.0
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 6.9e-73 278.9 290 60.3
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 9.0e-73 278.5 328 57.9
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 4.4e-72 276.2 318 57.9
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 7.6e-72 275.4 290 61.0
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 3.8e-71 273.1 294 61.6
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 1.1e-70 271.6 273 61.2
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 9.3e-70 268.5 289 59.2
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 2.1e-69 267.3 336 56.5
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 2.1e-69 267.3 325 56.0
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.1e-69 267.3 278 63.7
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.7e-69 266.9 278 63.3
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 3.5e-69 266.5 306 59.5
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.0e-68 265.0 328 58.2
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 1.3e-68 264.6 351 52.7
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.3e-68 264.6 334 56.3
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.3e-66 258.1 306 55.9
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.1e-65 255.0 278 61.9
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.2e-64 251.5 226 69.0
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 3.8e-63 246.5 289 57.1
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 8.4e-63 245.4 332 52.1
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 1.9e-62 244.2 333 51.1
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 9.3e-62 241.9 348 50.0
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 1.2e-61 241.5 335 49.9
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 1.6e-61 241.1 297 56.9
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 2.1e-61 240.7 348 49.7
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 1.0e-60 238.4 327 51.7
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 1.0e-60 238.4 327 51.7
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 1.3e-60 238.0 262 58.0
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 2.3e-60 237.3 332 51.2
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 5.1e-60 236.1 332 50.9
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 1.1e-59 235.0 218 65.1
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.9e-59 234.2 329 51.4
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 2.5e-59 233.8 332 50.6
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 3.3e-59 233.4 289 55.4
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.6e-58 231.1 296 52.0
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 6.2e-58 229.2 335 49.6
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 6.9e-57 225.7 232 59.9
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 9.0e-57 225.3 339 49.3
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 2.9e-55 220.3 202 63.9
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 1.4e-54 218.0 370 49.7
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 2.5e-54 217.2 195 69.7
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 1.0e-52 211.8 209 61.7
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 1.0e-52 211.8 209 61.7
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 5.1e-52 209.5 278 54.0
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 5.7e-51 206.1 325 50.8
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 4.8e-50 203.0 268 53.7
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 4.5e-48 196.4 278 51.1
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 2.5e-46 190.7 273 46.9
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 4.2e-46 189.9 253 52.6
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 7.2e-46 189.1 225 54.2
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.2e-45 188.3 255 50.6
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 7.9e-45 185.7 332 42.5
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 1.3e-44 184.9 286 43.4
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 1.5e-43 181.4 286 43.0
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 2.8e-42 177.2 286 47.2
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 1.1e-41 175.3 328 44.5
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.4e-41 174.9 188 59.0
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 1.8e-41 174.5 332 46.7
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 4.1e-41 173.3 183 61.7
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.4e-38 164.9 167 59.9
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 7.2e-38 162.5 296 47.3
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 2.6e-32 144.1 149 63.1
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 4.4e-27 126.7 121 63.6
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 8.0e-21 105.9 139 46.0
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.2e-16 92.0 100 59.0
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.0e-15 89.0 149 40.9
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 4.0e-12 77.0 90 53.3
FAN16G0422 Fragaria x ananassa HOM05D004913 ORTHO05D006150 7.7e-08 62.8 56 71.4
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 2.2e-07 61.2 169 31.4
Zm00001eb060940 Zea mays HOM05D004913 ORTHO05D006150 6.5e-07 59.7 59 66.1
Gohir.D08G197400 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.5e-06 57.8 55 60.0
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 3.2e-06 57.4 84 47.6
Gorai.007G212000 Gossypium raimondii HOM05D004913 ORTHO05D006150 9.4e-06 55.8 55 58.2


User provided reference genes

Program Settings