Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 6.9e-90 334.0 169 100.0
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 2.0e-89 332.4 169 98.8
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 2.3e-85 318.9 197 85.8
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 4.3e-84 314.7 166 94.0
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 9.7e-84 313.5 166 93.4
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 2.8e-83 312.0 166 91.6
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 2.8e-83 312.0 166 92.8
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 2.8e-83 312.0 166 92.8
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 3.7e-83 311.6 169 91.7
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 4.8e-83 311.2 166 92.8
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 1.1e-82 310.1 166 92.2
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 7.7e-81 303.9 169 87.6
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 7.7e-81 303.9 169 87.6
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 1.0e-80 303.5 166 88.6
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.7e-80 302.8 166 88.6
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 2.2e-80 302.4 166 88.0
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 5.0e-80 301.2 167 86.2
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 6.5e-80 300.8 166 88.6
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 8.5e-80 300.4 169 88.8
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 1.1e-79 300.1 169 87.0
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 1.9e-79 299.3 166 88.0
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 2.5e-79 298.9 166 88.0
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 2.5e-79 298.9 169 86.4
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 2.5e-79 298.9 167 87.4
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.5e-79 298.9 167 87.4
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.5e-79 298.9 167 87.4
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 2.5e-79 298.9 167 87.4
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 4.2e-79 298.1 166 88.0
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.2e-79 298.1 167 87.4
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 9.4e-79 297.0 166 88.0
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 1.2e-78 296.6 165 87.3
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 2.1e-78 295.8 166 85.5
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.1e-78 295.8 166 86.7
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 2.7e-78 295.4 166 86.1
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 2.7e-78 295.4 166 88.0
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 2.7e-78 295.4 169 85.2
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 1.0e-77 293.5 169 84.0
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 1.0e-77 293.5 169 84.0
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.8e-77 292.7 167 84.4
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 3.0e-77 292.0 169 84.0
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 3.0e-77 292.0 166 87.3
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 3.9e-77 291.6 169 86.4
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 3.9e-77 291.6 166 87.3
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 3.9e-77 291.6 166 84.9
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 6.7e-77 290.8 165 84.8
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 6.7e-77 290.8 169 84.6
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 6.7e-77 290.8 166 84.9
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.1e-76 290.0 169 82.8
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 1.5e-76 289.7 165 85.5
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 1.5e-76 289.7 169 82.2
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 2.0e-76 289.3 166 83.1
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 2.0e-76 289.3 167 83.2
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.3e-76 288.5 169 82.2
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 3.3e-76 288.5 169 82.2
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 3.3e-76 288.5 166 84.9
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 4.3e-76 288.1 169 81.7
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 4.3e-76 288.1 169 82.2
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 5.7e-76 287.7 166 84.9
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 1.3e-75 286.6 169 83.4
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.3e-75 286.6 184 78.8
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.7e-75 286.2 169 82.2
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.7e-75 286.2 184 78.8
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.7e-75 286.2 184 78.8
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 1.7e-75 286.2 165 83.6
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 1.7e-75 286.2 166 84.3
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.2e-75 285.8 169 81.7
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 2.8e-75 285.4 148 93.9
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.1e-74 283.5 169 80.5
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.1e-74 282.0 166 81.3
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 3.1e-74 282.0 169 83.4
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 4.1e-74 281.6 169 80.5
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 5.3e-74 281.2 169 79.9
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 5.3e-74 281.2 166 81.3
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 6.9e-74 280.8 169 79.9
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 1.2e-73 280.0 186 75.8
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.0e-73 279.3 165 80.6
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.6e-73 278.9 165 80.6
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 3.4e-73 278.5 169 79.3
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 4.5e-73 278.1 169 79.9
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 5.9e-73 277.7 149 88.6
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.0e-72 276.9 169 78.7
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.3e-72 276.6 182 75.3
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.2e-72 275.8 192 72.9
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.0e-72 274.6 169 76.9
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 6.5e-72 274.2 164 82.3
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 8.5e-72 273.9 149 87.2
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 8.5e-72 273.9 169 81.7
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 2.5e-71 272.3 169 78.7
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 3.2e-71 271.9 169 78.7
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 5.5e-71 271.2 169 78.1
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 5.5e-71 271.2 150 86.0
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 1.2e-70 270.0 207 67.1
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.6e-70 269.6 169 79.3
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 4.7e-70 268.1 143 88.8
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 7.9e-70 267.3 149 85.2
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 2.3e-69 265.8 149 83.9
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 3.0e-69 265.4 149 83.9
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 3.9e-69 265.0 150 83.3
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 8.8e-69 263.8 169 85.8
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 8.8e-69 263.8 166 73.5
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 2.0e-68 262.7 166 75.3
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 9.7e-68 260.4 147 83.7
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 2.8e-67 258.8 145 86.2
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.7e-67 258.5 155 81.9
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.1e-66 255.4 211 63.0
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.1e-66 255.4 155 81.3
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 9.1e-66 253.8 149 81.9
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 1.2e-65 253.4 178 73.6
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.0e-65 252.7 169 74.0
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 2.6e-65 252.3 167 76.0
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 4.5e-65 251.5 165 75.2
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 7.7e-65 250.8 150 82.0
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 2.2e-64 249.2 152 78.9
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 3.8e-64 248.4 166 71.1
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 9.4e-63 243.8 167 73.1
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 4.7e-62 241.5 149 77.9
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 2.3e-61 239.2 236 55.9
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 3.0e-61 238.8 126 87.3
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 2.6e-60 235.7 149 76.5
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 3.3e-60 235.3 157 76.4
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 9.7e-60 233.8 170 72.4
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.3e-59 233.4 167 71.3
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 2.2e-59 232.6 124 87.1
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 9.1e-58 227.3 151 74.2
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 3.2e-55 218.8 123 82.1
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 1.2e-54 216.9 167 67.1
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.7e-54 215.7 131 78.6
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 6.1e-54 214.5 188 57.4
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.4e-53 213.4 167 68.3
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.8e-53 213.0 157 66.2
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 5.2e-53 211.5 127 85.0
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 9.7e-52 207.2 122 84.4
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 9.7e-52 207.2 122 84.4
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 1.3e-51 206.8 122 83.6
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 1.7e-51 206.5 155 70.3
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 2.2e-51 206.1 122 83.6
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 2.4e-50 202.6 124 81.5
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 9.1e-50 200.7 124 79.8
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.1e-47 193.7 141 70.9
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 1.1e-47 193.7 121 81.8
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.2e-46 190.3 136 66.9
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 5.2e-45 184.9 147 68.0
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 1.2e-41 173.7 106 82.1
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 1.6e-38 163.3 90 81.1
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 1.6e-38 163.3 90 87.8
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.9e-37 157.5 95 86.3
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.1e-31 140.6 83 83.1
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 2.5e-31 139.4 117 61.5
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 5.8e-28 128.3 87 69.0
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.4e-26 123.6 93 66.7
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 9.2e-26 120.9 82 69.5
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.3e-24 117.1 73 79.5
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 1.3e-24 117.1 103 62.1
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.0e-24 115.9 78 70.5
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.1e-23 114.0 75 73.3
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.1e-21 107.5 74 67.6
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 6.4e-19 98.2 64 71.9
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 2.1e-17 93.2 165 37.0
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.5e-17 92.4 65 70.8
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 1.0e-16 90.9 130 41.5
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 2.8e-14 82.8 49 83.7
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 2.8e-14 82.8 49 83.7
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 8.9e-13 77.8 108 49.1
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.6e-12 76.3 44 72.7
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.2e-11 73.2 38 84.2
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 3.2e-10 69.3 158 30.4


User provided reference genes

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