Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9C11CW Arachis hypogaea HOM05D003362 ORTHO05D003783 4.1e-78 294.7 148 100.0
arahy.Tifrunner.gnm1.ann1.9IBE58 Arachis hypogaea HOM05D003362 ORTHO05D003783 4.1e-78 294.7 148 100.0
arahy.Tifrunner.gnm1.ann1.Q5CKGN Arachis hypogaea HOM05D003362 ORTHO05D003783 4.1e-78 294.7 148 100.0
arahy.Tifrunner.gnm1.ann1.TY7N4H Arachis hypogaea HOM05D003362 ORTHO05D003783 2.4e-46 189.1 132 75.8
arahy.Tifrunner.gnm1.ann1.6JHV2K Arachis hypogaea HOM05D003362 ORTHO05D003783 5.6e-35 151.4 75 94.7
arahy.Tifrunner.gnm1.ann1.LGAM8W Arachis hypogaea HOM05D003362 ORTHO05D003783 5.6e-35 151.4 75 96.0
Glyma.10G292200 Glycine max HOM05D003362 ORTHO05D003783 3.0e-28 129.0 99 67.7
Glyma.20G241600 Glycine max HOM05D003362 ORTHO05D003783 3.9e-28 128.6 99 67.7
Phvul.003G216600 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 3.9e-28 128.6 83 73.5
TPR.G10424 Trifolium pratense HOM05D003362 ORTHO05D003783 1.8e-25 119.8 89 62.9
Medtr1g115840 Medicago truncatula HOM05D003362 ORTHO05D003783 1.2e-24 117.1 83 65.1
Psat6g237920 Pisum sativum HOM05D003362 ORTHO05D003783 2.0e-24 116.3 80 68.8
VMungo0720G1901 Vigna mungo HOM05D003362 ORTHO05D003783 2.6e-24 115.9 83 66.3
Medtr1g115820 Medicago truncatula HOM05D003362 ORTHO05D003783 2.4e-22 109.4 118 48.3
Psat6g238360 Pisum sativum HOM05D003362 ORTHO05D003783 2.4e-22 109.4 118 48.3
TPR.G30361 Trifolium pratense HOM05D003362 ORTHO05D003783 2.4e-22 109.4 118 47.5
Medtr1g115850 Medicago truncatula HOM05D003362 ORTHO05D003783 1.2e-21 107.1 83 61.4
VMungo0720G0350 Vigna mungo HOM05D003362 ORTHO05D003783 2.7e-21 105.9 105 52.4
Glyma.20G241500 Glycine max HOM05D003362 ORTHO05D003783 3.5e-21 105.5 105 52.4
arahy.Tifrunner.gnm1.ann1.2GDU51 Arachis hypogaea HOM05D003362 ORTHO05D003783 7.8e-21 104.4 103 53.4
Phvul.007G008600 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 7.8e-21 104.4 105 52.4
Lj5g0021768 Lotus japonicus HOM05D003362 ORTHO05D003783 3.9e-20 102.1 104 52.9
Lj5g0004759 Lotus japonicus HOM05D003362 ORTHO05D003783 1.6e-18 96.7 90 53.3
Lj5g0007558 Lotus japonicus HOM05D003362 ORTHO05D003783 1.1e-17 94.0 91 51.6
arahy.Tifrunner.gnm1.ann1.425ZXH Arachis hypogaea HOM05D003362 ORTHO05D003783 3.1e-17 92.4 102 48.0
Manes.07G107200 Manihot esculenta HOM05D003362 ORTHO05D003783 1.5e-16 90.1 101 45.5
TWI38G1411 Tripterygium wilfordii HOM05D003362 ORTHO05D003783 4.4e-16 88.6 99 45.5
Cpa.g.sc1855.1 Carica papaya HOM05D003362 ORTHO05D003783 7.5e-16 87.8 93 49.5
CiPaw.01G280400 Carya illinoinensis HOM05D003362 ORTHO05D003783 7.5e-16 87.8 105 43.8
Cfa001554 Carpinus fangiana HOM05D003362 ORTHO05D003783 2.9e-15 85.9 96 46.9
MD01G1117800 Malus domestica HOM05D003362 ORTHO05D003783 4.9e-15 85.1 102 44.1
MD01G1118000 Malus domestica HOM05D003362 ORTHO05D003783 6.4e-15 84.7 102 44.1
Prupe.2G225200 Prunus persica HOM05D003362 ORTHO05D003783 1.1e-14 84.0 88 45.5
Migut.D00159 Erythranthe guttata HOM05D003362 ORTHO05D003783 1.4e-14 83.6 85 44.7
SGA_v2.0_scaffold2G01424 Striga asiatica HOM05D003362 ORTHO05D003783 1.9e-14 83.2 98 42.9
MD01G1118100 Malus domestica HOM05D003362 ORTHO05D003783 2.4e-14 82.8 105 41.9
MD07G1186300 Malus domestica HOM05D003362 ORTHO05D003783 2.4e-14 82.8 105 41.9
Eucgr.F03816 Eucalyptus grandis HOM05D003362 ORTHO05D003783 3.2e-14 82.4 103 39.8
CANSAT21G2171 Cannabis sativa HOM05D003362 ORTHO05D003783 5.4e-14 81.6 85 44.7
Nn2g12834 Nelumbo nucifera HOM05D003362 ORTHO05D003783 7.1e-14 81.3 85 43.5
SalBow3G2785 Salvia bowleyana HOM05D003362 ORTHO05D003783 9.2e-14 80.9 99 41.4
SalBow3G3107 Salvia bowleyana HOM05D003362 ORTHO05D003783 9.2e-14 80.9 99 41.4
CSS0023458 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 1.2e-13 80.5 104 41.3
CAN.G184.19 Capsicum annuum HOM05D003362 ORTHO05D003783 1.6e-13 80.1 85 42.4
Lalb_Chr02g0143921 Lupinus albus HOM05D003362 ORTHO05D003783 1.6e-13 80.1 96 43.8
SalBow1G4850 Salvia bowleyana HOM05D003362 ORTHO05D003783 1.6e-13 80.1 92 41.3
Phvul.007G008500 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 3.5e-13 79.0 98 42.9
Nitab4.5_0005313g0010 Nicotiana tabacum HOM05D003362 ORTHO05D003783 6.0e-13 78.2 93 36.6
unitig_0.g651 Utricularia gibba HOM05D003362 ORTHO05D003783 6.0e-13 78.2 114 37.7
PGR142G2050 Punica granatum HOM05D003362 ORTHO05D003783 7.8e-13 77.8 96 38.5
Actinidia38221 Actinidia chinensis HOM05D003362 ORTHO05D003783 1.0e-12 77.4 93 40.9
CSS0050436 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 1.0e-12 77.4 116 38.8
Glyma.20G241700 Glycine max HOM05D003362 ORTHO05D003783 1.0e-12 77.4 105 38.1
PGR044G1755 Punica granatum HOM05D003362 ORTHO05D003783 1.0e-12 77.4 95 40.0
QL08p057674 Quercus lobata HOM05D003362 ORTHO05D003783 1.0e-12 77.4 128 37.5
FvH4_7g20870 Fragaria vesca HOM05D003362 ORTHO05D003783 1.3e-12 77.0 77 46.8
FAN06G2019 Fragaria x ananassa HOM05D003362 ORTHO05D003783 1.3e-12 77.0 77 46.8
RcHm_v2.0_Chr1g0365111 Rosa chinensis HOM05D003362 ORTHO05D003783 1.3e-12 77.0 77 46.8
Dinv31395 Davidia involucrata HOM05D003362 ORTHO05D003783 1.7e-12 76.6 96 41.7
Sopen05g006090 Solanum pennellii HOM05D003362 ORTHO05D003783 1.7e-12 76.6 85 40.0
Thecc.10G060600 Theobroma cacao HOM05D003362 ORTHO05D003783 1.7e-12 76.6 109 40.4
vmacro07205 Vaccinium macrocarpon HOM05D003362 ORTHO05D003783 1.7e-12 76.6 83 42.2
Atru.chr12.582 Acer truncatum HOM05D003362 ORTHO05D003783 2.3e-12 76.3 93 40.9
CSS0028549 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 2.3e-12 76.3 103 39.8
FAN03G1303 Fragaria x ananassa HOM05D003362 ORTHO05D003783 2.3e-12 76.3 105 39.0
Solyc05g010320.4 Solanum lycopersicum HOM05D003362 ORTHO05D003783 2.3e-12 76.3 85 40.0
Lj1A930T84 Lonicera japonica HOM05D003362 ORTHO05D003783 3.0e-12 75.9 87 40.2
Lalb_Chr06g0164121 Lupinus albus HOM05D003362 ORTHO05D003783 3.0e-12 75.9 124 34.7
Nitab4.5_0000027g0470 Nicotiana tabacum HOM05D003362 ORTHO05D003783 3.0e-12 75.9 85 38.8
PGR044G1348 Punica granatum HOM05D003362 ORTHO05D003783 3.0e-12 75.9 84 42.9
FAN10G3261 Fragaria x ananassa HOM05D003362 ORTHO05D003783 3.9e-12 75.5 105 39.0
MBI14_g16292_MAGBIO Magnolia biondii HOM05D003362 ORTHO05D003783 3.9e-12 75.5 88 43.2
BcaB02g07695 Brassica carinata HOM05D003362 ORTHO05D003783 5.1e-12 75.1 87 41.4
AUR62015655 Chenopodium quinoa HOM05D003362 ORTHO05D003783 5.1e-12 75.1 77 41.6
Gorai.013G023400 Gossypium raimondii HOM05D003362 ORTHO05D003783 5.1e-12 75.1 104 37.5
Hma1.2p1_0629F.1_g192100 Hydrangea macrophylla HOM05D003362 ORTHO05D003783 5.1e-12 75.1 82 43.9
VMungo0720G3152 Vigna mungo HOM05D003362 ORTHO05D003783 5.1e-12 75.1 102 40.2
arahy.Tifrunner.gnm1.ann1.TJ3PHW Arachis hypogaea HOM05D003362 ORTHO05D003783 6.6e-12 74.7 116 38.8
arahy.Tifrunner.gnm1.ann1.VJQ7J1 Arachis hypogaea HOM05D003362 ORTHO05D003783 6.6e-12 74.7 116 38.8
Cc02_g08570 Coffea canephora HOM05D003362 ORTHO05D003783 6.6e-12 74.7 116 37.9
Thhalv10010658m.g Eutrema salsugineum HOM05D003362 ORTHO05D003783 6.6e-12 74.7 85 42.4
Potri.010G213000 Populus trichocarpa HOM05D003362 ORTHO05D003783 6.6e-12 74.7 80 42.5
Rhsim01G0013100 Rhododendron simsii HOM05D003362 ORTHO05D003783 6.6e-12 74.7 113 38.9
Gohir.A13G020400 Gossypium hirsutum HOM05D003362 ORTHO05D003783 8.6e-12 74.3 104 38.5
Gohir.D13G021000 Gossypium hirsutum HOM05D003362 ORTHO05D003783 8.6e-12 74.3 104 37.5
Actinidia38220 Actinidia chinensis HOM05D003362 ORTHO05D003783 1.1e-11 73.9 100 38.0
BcaC08g44726 Brassica carinata HOM05D003362 ORTHO05D003783 1.1e-11 73.9 87 40.2
A07p22450 Brassica napus HOM05D003362 ORTHO05D003783 1.1e-11 73.9 87 40.2
C06p22640 Brassica napus HOM05D003362 ORTHO05D003783 1.1e-11 73.9 87 40.2
BraA07t29921Z Brassica rapa HOM05D003362 ORTHO05D003783 1.1e-11 73.9 87 40.2
CARHR165150 Cardamine hirsuta HOM05D003362 ORTHO05D003783 1.1e-11 73.9 85 41.2
HanXRQChr15g0496871 Helianthus annuus HOM05D003362 ORTHO05D003783 1.1e-11 73.9 93 41.9
Lj5g0014981 Lotus japonicus HOM05D003362 ORTHO05D003783 1.1e-11 73.9 123 37.4
Medtr1g115830 Medicago truncatula HOM05D003362 ORTHO05D003783 1.1e-11 73.9 101 40.6
Medtr1g115890 Medicago truncatula HOM05D003362 ORTHO05D003783 1.1e-11 73.9 117 40.2
Sp5g07300 Schrenkiella parvula HOM05D003362 ORTHO05D003783 1.1e-11 73.9 85 42.4
MSTRG.21607 Avicennia marina HOM05D003362 ORTHO05D003783 1.5e-11 73.6 90 37.8
PSO384G0434 Papaver somniferum HOM05D003362 ORTHO05D003783 1.5e-11 73.6 101 35.6
GSVIVG01032619001 Vitis vinifera HOM05D003362 ORTHO05D003783 1.5e-11 73.6 85 42.4
Medtr7g027135 Medicago truncatula HOM05D003362 ORTHO05D003783 1.9e-11 73.2 91 42.9
Carub.0005s2175 Capsella rubella HOM05D003362 ORTHO05D003783 2.5e-11 72.8 85 40.0
CDE07G1335 Ceratophyllum demersum HOM05D003362 ORTHO05D003783 2.5e-11 72.8 70 47.1
AUR62020547 Chenopodium quinoa HOM05D003362 ORTHO05D003783 2.5e-11 72.8 77 40.3
Duzib114G0926 Durio zibethinus HOM05D003362 ORTHO05D003783 2.5e-11 72.8 116 39.7
Sabra10G0164900 Salix brachista HOM05D003362 ORTHO05D003783 2.5e-11 72.8 116 37.1
Thecc.10G061200 Theobroma cacao HOM05D003362 ORTHO05D003783 2.5e-11 72.8 74 47.3
Medtr1g115870 Medicago truncatula HOM05D003362 ORTHO05D003783 4.3e-11 72.0 116 38.8
PSO339G0073 Papaver somniferum HOM05D003362 ORTHO05D003783 4.3e-11 72.0 101 36.6
SEGI_22659 Sequoiadendron giganteum HOM05D003362 ORTHO05D003783 4.3e-11 72.0 98 41.8
Ah.06g183020 Amaranthus hybridus HOM05D003362 ORTHO05D003783 5.6e-11 71.6 90 35.6
TPR.G10384 Trifolium pratense HOM05D003362 ORTHO05D003783 5.6e-11 71.6 81 45.7
Phvul.002G276500 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 7.3e-11 71.2 113 37.2
CARHR165140 Cardamine hirsuta HOM05D003362 ORTHO05D003783 9.5e-11 70.9 98 38.8
Ciclev10032697m.g Citrus clementina HOM05D003362 ORTHO05D003783 1.2e-10 70.5 98 39.8
A09p48130 Brassica napus HOM05D003362 ORTHO05D003783 1.6e-10 70.1 85 38.8
BraA09t40267Z Brassica rapa HOM05D003362 ORTHO05D003783 1.6e-10 70.1 85 38.8
COL.COLO4_10881 Corchorus olitorius HOM05D003362 ORTHO05D003783 1.6e-10 70.1 108 38.0
ECA232G4190 Erigeron canadensis HOM05D003362 ORTHO05D003783 1.6e-10 70.1 115 33.9
Eucgr.J01152 Eucalyptus grandis HOM05D003362 ORTHO05D003783 1.6e-10 70.1 74 43.2
Eucgr.J01153 Eucalyptus grandis HOM05D003362 ORTHO05D003783 1.6e-10 70.1 74 43.2
Aa31LG10G10040 Aethionema arabicum HOM05D003362 ORTHO05D003783 2.1e-10 69.7 88 39.8
Ca_11318_v3 Cicer arietinum L. HOM05D003362 ORTHO05D003783 2.1e-10 69.7 100 39.0
PSO407G0338 Papaver somniferum HOM05D003362 ORTHO05D003783 2.1e-10 69.7 77 41.6
Rhsim03G0098600 Rhododendron simsii HOM05D003362 ORTHO05D003783 2.1e-10 69.7 85 37.6
HPP92_021163 Vanilla planifolia HOM05D003362 ORTHO05D003783 2.1e-10 69.7 102 38.2
Zm00001eb062510 Zea mays HOM05D003362 ORTHO05D003783 2.8e-10 69.3 85 37.6
AL5G36240 Arabidopsis lyrata HOM05D003362 ORTHO05D003783 3.6e-10 68.9 85 38.8
BolC6t37453H Brassica oleracea HOM05D003362 ORTHO05D003783 3.6e-10 68.9 87 37.9
EL10Ac2g03488 Beta vulgaris HOM05D003362 ORTHO05D003783 4.7e-10 68.6 77 39.0
Nn2g10542 Nelumbo nucifera HOM05D003362 ORTHO05D003783 4.7e-10 68.6 77 42.9
Sc06g0001890 Simmondsia chinensis HOM05D003362 ORTHO05D003783 4.7e-10 68.6 116 33.6
Aqoxy2G01950 Aquilegia oxysepala HOM05D003362 ORTHO05D003783 6.2e-10 68.2 69 46.4
AT3G55120 Arabidopsis thaliana HOM05D003362 ORTHO05D003783 8.1e-10 67.8 85 37.6
Psat6g237840 Pisum sativum HOM05D003362 ORTHO05D003783 8.1e-10 67.8 124 31.5
THA.LOC104825165 Tarenaya hassleriana HOM05D003362 ORTHO05D003783 8.1e-10 67.8 92 34.8
BcaC07g39836 Brassica carinata HOM05D003362 ORTHO05D003783 1.1e-09 67.4 85 37.6
Hund19984 Selenicereus undatus HOM05D003362 ORTHO05D003783 1.1e-09 67.4 75 40.0
Solyc05g010310.3 Solanum lycopersicum HOM05D003362 ORTHO05D003783 1.1e-09 67.4 85 36.5
C08p30380 Brassica napus HOM05D003362 ORTHO05D003783 1.4e-09 67.0 85 37.6
BolC8t50659H Brassica oleracea HOM05D003362 ORTHO05D003783 1.4e-09 67.0 85 37.6
Sopen05g006080 Solanum pennellii HOM05D003362 ORTHO05D003783 1.4e-09 67.0 85 36.5
HanXRQChr15g0496881 Helianthus annuus HOM05D003362 ORTHO05D003783 1.8e-09 66.6 93 39.8
HanXRQChr15g0496901 Helianthus annuus HOM05D003362 ORTHO05D003783 3.1e-09 65.9 93 38.7
Lsat_1_v5_gn_9_66221 Lactuca sativa HOM05D003362 ORTHO05D003783 3.1e-09 65.9 99 38.4
Os03g0819600 Oryza sativa ssp. japonica HOM05D003362 ORTHO05D003783 4.0e-09 65.5 98 33.7
Sp2g30475 Schrenkiella parvula HOM05D003362 ORTHO05D003783 5.2e-09 65.1 104 34.6
Sed0018943 Sechium edule HOM05D003362 ORTHO05D003783 6.8e-09 64.7 118 30.5
AT5G66220 Arabidopsis thaliana HOM05D003362 ORTHO05D003783 8.9e-09 64.3 87 39.1
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 8.9e-09 64.3 87 39.1
MELO3C025484.2 Cucumis melo HOM05D003362 ORTHO05D003783 1.2e-08 63.9 95 33.7
Thhalv10004922m.g Eutrema salsugineum HOM05D003362 ORTHO05D003783 1.2e-08 63.9 89 36.0
CARHR281510 Cardamine hirsuta HOM05D003362 ORTHO05D003783 2.6e-08 62.8 87 40.2
CsaV3_5G026140 Cucumis sativus L. HOM05D003362 ORTHO05D003783 3.4e-08 62.4 95 32.6
ClCG09G020280 Citrullus lanatus HOM05D003362 ORTHO05D003783 5.8e-08 61.6 96 31.2
TAR623G0942 Trochodendron aralioides HOM05D003362 ORTHO05D003783 5.8e-08 61.6 65 44.6
ATR0759G123 Amborella trichopoda HOM05D003362 ORTHO05D003783 2.2e-07 59.7 80 36.2
MBI14_g22903_MAGBIO Magnolia biondii HOM05D003362 ORTHO05D003783 8.4e-07 57.8 96 31.2
Rhsim03G0120200 Rhododendron simsii HOM05D003362 ORTHO05D003783 1.1e-06 57.4 67 41.8
BcaB05g22784 Brassica carinata HOM05D003362 ORTHO05D003783 5.4e-06 55.1 60 41.7
AUR62015656 Chenopodium quinoa HOM05D003362 ORTHO05D003783 7.1e-06 54.7 62 35.5
Peaxi162Scf00038g01957 Petunia axillaris HOM05D003362 ORTHO05D003783 7.1e-06 54.7 83 34.9
Mapoly0167s0012 Marchantia polymorpha HOM05D003362 ORTHO05D003783 9.2e-06 54.3 83 33.7


User provided reference genes

Program Settings