Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9H48GU Arachis hypogaea HOM05D003116 ORTHO05D085597 9.4e-131 470.3 257 100.0
arahy.Tifrunner.gnm1.ann1.3K1ZLN Arachis hypogaea HOM05D003116 ORTHO05D003619 1.3e-47 194.1 130 80.0
arahy.Tifrunner.gnm1.ann1.UXIK5Z Arachis hypogaea HOM05D003116 ORTHO05D003619 1.5e-43 180.6 92 95.7
arahy.Tifrunner.gnm1.ann1.PEQF49 Arachis hypogaea HOM05D000048 ORTHO05D003619 9.6e-43 177.9 92 93.5
arahy.Tifrunner.gnm1.ann1.3K81QB Arachis hypogaea HOM05D003116 ORTHO05D003619 7.1e-38 161.8 80 97.5
arahy.Tifrunner.gnm1.ann1.2YN0NK Arachis hypogaea HOM05D003116 ORTHO05D003619 1.5e-35 154.1 108 75.0
arahy.Tifrunner.gnm1.ann1.U29Z63 Arachis hypogaea HOM05D003116 ORTHO05D003619 2.5e-35 153.3 80 93.8
arahy.Tifrunner.gnm1.ann1.T6DYUJ Arachis hypogaea HOM05D003116 ORTHO05D003619 5.7e-35 152.1 80 91.2
Medtr7g102760 Medicago truncatula HOM05D003116 ORTHO05D003619 4.8e-26 122.5 92 69.6
VMungo1383G1045 Vigna mungo HOM05D003116 ORTHO05D003619 6.3e-26 122.1 92 63.0
Lj1g0028191 Lotus japonicus HOM05D003116 ORTHO05D003619 8.2e-26 121.7 92 66.3
Glyma.19G188500 Glycine max HOM05D003116 ORTHO05D003619 2.0e-24 117.1 92 60.9
Psat3g038280 Pisum sativum HOM05D003116 ORTHO05D003619 7.7e-24 115.2 92 65.2
Lalb_Chr25g0288771 Lupinus albus HOM05D003116 ORTHO05D003619 1.7e-23 114.0 97 60.8
Phvul.001G183700 Phaseolus vulgaris HOM05D003116 ORTHO05D003619 1.1e-22 111.3 101 54.5
Atru.chr8.1701 Acer truncatum HOM05D003116 ORTHO05D003619 4.8e-18 95.9 92 46.7
TAR625G1207 Trochodendron aralioides HOM05D003116 ORTHO05D003619 1.5e-16 90.9 92 47.8
TAR636G1363 Trochodendron aralioides HOM05D003116 ORTHO05D003619 1.5e-16 90.9 92 47.8
TAR636G1518 Trochodendron aralioides HOM05D003116 ORTHO05D003619 1.5e-16 90.9 92 47.8
CDE02G2540 Ceratophyllum demersum HOM05D003116 ORTHO05D003619 1.3e-15 87.8 99 47.5
Thecc.05G075800 Theobroma cacao HOM05D003116 ORTHO05D003619 1.7e-15 87.4 94 44.7
Nitab4.5_0000132g0470 Nicotiana tabacum HOM05D003116 ORTHO05D003619 3.2e-14 83.2 92 45.7
COL.COLO4_22257 Corchorus olitorius HOM05D003116 ORTHO05D003619 7.2e-14 82.0 103 41.7
Nn3g20158 Nelumbo nucifera HOM05D003116 ORTHO05D003619 1.2e-13 81.3 92 46.7
Peaxi162Scf00110g00082 Petunia axillaris HOM05D003116 ORTHO05D003619 1.2e-13 81.3 92 40.2
TAR636G0211 Trochodendron aralioides HOM05D003116 ORTHO05D003619 1.2e-13 81.3 92 46.7
AagrBONN_evm.TU.Sc2ySwM_344.2897 Anthoceros agrestis HOM05D003116 ORTHO05D003619 1.6e-13 80.9 92 41.3
Gohir.A04G068200 Gossypium hirsutum HOM05D003116 ORTHO05D003619 1.6e-13 80.9 97 43.3
A01p18940 Brassica napus HOM05D003116 ORTHO05D003619 2.1e-13 80.5 106 42.5
Lsat_1_v5_gn_8_2981 Lactuca sativa HOM05D003116 ORTHO05D003619 2.1e-13 80.5 92 45.7
MBI11_g04280_MAGBIO Magnolia biondii HOM05D003116 ORTHO05D003619 2.1e-13 80.5 94 46.8
Actinidia39860 Actinidia chinensis HOM05D003116 ORTHO05D003619 2.7e-13 80.1 88 44.3
Hma1.2p1_0171F.1_g075610 Hydrangea macrophylla HOM05D003116 ORTHO05D003619 2.7e-13 80.1 92 45.7
ECA233G1402 Erigeron canadensis HOM05D003116 ORTHO05D003619 3.6e-13 79.7 92 45.7
RcHm_v2.0_Chr4g0442151 Rosa chinensis HOM05D003116 ORTHO05D003619 4.7e-13 79.3 93 44.1
GSVIVG01019146001 Vitis vinifera HOM05D003116 ORTHO05D003619 4.7e-13 79.3 92 45.7
Duzib128G0562 Durio zibethinus HOM05D003116 ORTHO05D003619 6.1e-13 79.0 92 45.7
FAN05G2101 Fragaria x ananassa HOM05D003116 ORTHO05D003619 6.1e-13 79.0 88 43.2
vmacro10396 Vaccinium macrocarpon HOM05D003116 ORTHO05D003619 6.1e-13 79.0 92 44.6
GSVIVG01033716001 Vitis vinifera HOM05D003116 ORTHO05D003619 6.1e-13 79.0 93 43.0
Ciclev10023555m.g Citrus clementina HOM05D003116 ORTHO05D003619 7.9e-13 78.6 92 45.7
Ciclev10013675m.g Citrus clementina HOM05D003116 ORTHO05D003619 1.0e-12 78.2 92 45.7
Dinv36343 Davidia involucrata HOM05D003116 ORTHO05D003619 1.0e-12 78.2 92 45.7
Duzib177G0648 Durio zibethinus HOM05D003116 ORTHO05D003619 1.0e-12 78.2 92 45.7
Manes.08G104900 Manihot esculenta HOM05D003116 ORTHO05D003619 1.0e-12 78.2 92 44.6
SGA_v2.0_scaffold7G04085 Striga asiatica HOM05D003116 ORTHO05D003619 1.0e-12 78.2 103 39.8
CSS0019916 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 1.4e-12 77.8 92 44.6
FAN05G5198 Fragaria x ananassa HOM05D003116 ORTHO05D003619 1.4e-12 77.8 88 42.0
Mapoly0014s0040 Marchantia polymorpha HOM05D003116 ORTHO05D003619 1.4e-12 77.8 92 41.3
Os04g0659900 Oryza sativa ssp. japonica HOM05D003116 ORTHO05D003619 1.4e-12 77.8 92 44.6
Atru.chr12.2147 Acer truncatum HOM05D003116 ORTHO05D003619 1.8e-12 77.4 92 42.4
Nitab4.5_0009004g0010 Nicotiana tabacum HOM05D003116 ORTHO05D003619 1.8e-12 77.4 92 45.7
SalBow8G0641 Salvia bowleyana HOM05D003116 ORTHO05D003619 1.8e-12 77.4 92 44.6
Dinv37361 Davidia involucrata HOM05D003116 ORTHO05D003619 2.3e-12 77.0 97 44.3
Eucgr.B01382 Eucalyptus grandis HOM05D003116 ORTHO05D003619 2.3e-12 77.0 92 43.5
Nitab4.5_0007901g0020 Nicotiana tabacum HOM05D003116 ORTHO05D003619 2.3e-12 77.0 92 44.6
EL10Ac1g01549 Beta vulgaris HOM05D003116 ORTHO05D003619 3.0e-12 76.6 92 40.2
FvH4_6g17270 Fragaria vesca HOM05D003116 ORTHO05D003619 3.0e-12 76.6 88 42.0
HanXRQChr05g0156871 Helianthus annuus HOM05D003116 ORTHO05D003619 3.0e-12 76.6 92 42.4
Solyc04g009810.3 Solanum lycopersicum HOM05D003116 ORTHO05D003619 3.0e-12 76.6 92 44.6
Sopen04g004940 Solanum pennellii HOM05D003116 ORTHO05D003619 3.0e-12 76.6 92 44.6
Thecc.05G204800 Theobroma cacao HOM05D003116 ORTHO05D003619 3.0e-12 76.6 92 44.6
Actinidia38911 Actinidia chinensis HOM05D003116 ORTHO05D003619 3.9e-12 76.3 92 43.5
DCAR_023104 Daucus carota HOM05D003116 ORTHO05D003619 3.9e-12 76.3 92 41.3
Gohir.D08G244300 Gossypium hirsutum HOM05D003116 ORTHO05D003619 3.9e-12 76.3 92 44.6
Gorai.004G260600 Gossypium raimondii HOM05D003116 ORTHO05D003619 3.9e-12 76.3 92 44.6
TAR636G2277 Trochodendron aralioides HOM05D003116 ORTHO05D003619 3.9e-12 76.3 85 45.9
HPP92_011793 Vanilla planifolia HOM05D003116 ORTHO05D003619 5.2e-12 75.9 92 42.4
BcaNung01649 Brassica carinata HOM05D003116 ORTHO05D003619 6.7e-12 75.5 92 43.5
AUR62036544 Chenopodium quinoa HOM05D003116 ORTHO05D003619 6.7e-12 75.5 92 41.3
Cc02_g09220 Coffea canephora HOM05D003116 ORTHO05D003619 6.7e-12 75.5 92 42.4
Thhalv10025473m.g Eutrema salsugineum HOM05D003116 ORTHO05D003619 6.7e-12 75.5 92 44.6
Oeu033264.1 Olea europaea HOM05D003116 ORTHO05D003619 6.7e-12 75.5 92 43.5
MSTRG.9020 Avicennia marina HOM05D003116 ORTHO05D003619 8.8e-12 75.1 92 42.4
EL10Ac4g09413 Beta vulgaris HOM05D003116 ORTHO05D003619 8.8e-12 75.1 92 43.5
Gohir.A08G224000 Gossypium hirsutum HOM05D003116 ORTHO05D003619 8.8e-12 75.1 92 43.5
CSS0045595 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 1.1e-11 74.7 92 42.4
TWI14G0774 Tripterygium wilfordii HOM05D003116 ORTHO05D003619 1.1e-11 74.7 92 43.5
ATR0609G064 Amborella trichopoda HOM05D003116 ORTHO05D003619 1.5e-11 74.3 92 42.4
A03p57410 Brassica napus HOM05D003116 ORTHO05D003619 1.5e-11 74.3 102 40.2
CSS0019586 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 1.5e-11 74.3 88 43.2
PGR119G1776 Punica granatum HOM05D003116 ORTHO05D003619 1.5e-11 74.3 92 43.5
SMO356G0619 Selaginella moellendorffii HOM05D003116 ORTHO05D003619 1.5e-11 74.3 92 44.6
Hund20972 Selenicereus undatus HOM05D003116 ORTHO05D382736 1.5e-11 74.3 76 48.7
Zm00001eb067580 Zea mays HOM05D003116 ORTHO05D003619 1.5e-11 74.3 92 42.4
CARHR235350 Cardamine hirsuta HOM05D003116 ORTHO05D003619 2.0e-11 73.9 92 43.5
Sc25g0001710 Simmondsia chinensis HOM05D003116 ORTHO05D003619 2.0e-11 73.9 92 41.3
Hund07322 Selenicereus undatus HOM05D003116 ORTHO05D003619 2.6e-11 73.6 92 43.5
BcaC06g32676 Brassica carinata HOM05D003116 ORTHO05D003619 3.3e-11 73.2 92 42.4
Glyma.20G219800 Glycine max HOM05D003116 ORTHO05D003619 3.3e-11 73.2 93 44.1
PGSC0003DMG400025436 Solanum tuberosum HOM05D003116 ORTHO05D003619 3.3e-11 73.2 92 43.5
TPR.G14663 Trifolium pratense HOM05D003116 ORTHO05D003619 3.3e-11 73.2 93 41.9
AL7G25070 Arabidopsis lyrata HOM05D003116 ORTHO05D003619 4.4e-11 72.8 92 42.4
AT4G27650 Arabidopsis thaliana HOM05D003116 ORTHO05D003619 4.4e-11 72.8 92 42.4
Lj5g0010554 Lotus japonicus HOM05D003116 ORTHO05D003619 4.4e-11 72.8 93 43.0
Peaxi162Scf00135g01111 Petunia axillaris HOM05D003116 ORTHO05D003619 4.4e-11 72.8 92 42.4
Sp7g25620 Schrenkiella parvula HOM05D003116 ORTHO05D003619 4.4e-11 72.8 92 43.5
PGSC0003DMG400028274 Solanum tuberosum HOM05D003116 ORTHO05D003619 4.4e-11 72.8 104 36.5
arahy.Tifrunner.gnm1.ann1.6AR5V7 Arachis hypogaea HOM05D003116 ORTHO05D003619 5.7e-11 72.4 93 44.1
arahy.Tifrunner.gnm1.ann1.9IK2W2 Arachis hypogaea HOM05D003116 ORTHO05D003619 5.7e-11 72.4 93 44.1
arahy.Tifrunner.gnm1.ann1.I49W7B Arachis hypogaea HOM05D003116 ORTHO05D003619 5.7e-11 72.4 93 44.1
arahy.Tifrunner.gnm1.ann1.W3HBVG Arachis hypogaea HOM05D003116 ORTHO05D003619 5.7e-11 72.4 93 44.1
BcaC09g50563 Brassica carinata HOM05D003116 ORTHO05D003619 5.7e-11 72.4 92 41.3
Glyma.10G170200 Glycine max HOM05D003116 ORTHO05D003619 5.7e-11 72.4 93 43.0
Medtr1g078400 Medicago truncatula HOM05D003116 ORTHO05D003619 5.7e-11 72.4 93 43.0
Lalb_Chr06g0168431 Lupinus albus HOM05D003116 ORTHO05D003619 7.4e-11 72.0 94 42.6
Potri.005G204500 Populus trichocarpa HOM05D003116 ORTHO05D003619 7.4e-11 72.0 92 41.3
SEGI_30925 Sequoiadendron giganteum HOM05D003116 ORTHO05D003619 7.4e-11 72.0 92 38.0
THA.LOC104821795 Tarenaya hassleriana HOM05D003116 ORTHO05D003619 7.4e-11 72.0 92 41.3
TPR.G14646 Trifolium pratense HOM05D003116 ORTHO05D003619 7.4e-11 72.0 93 43.0
Psat6g052120 Pisum sativum HOM05D003116 ORTHO05D003619 9.7e-11 71.6 93 40.9
Prupe.6G358700 Prunus persica HOM05D003116 ORTHO05D003619 9.7e-11 71.6 93 45.2
Aqoxy5G00402 Aquilegia oxysepala HOM05D003116 ORTHO05D003619 1.3e-10 71.2 92 42.4
Ca_09971_v3 Cicer arietinum L. HOM05D003116 ORTHO05D003619 1.3e-10 71.2 93 41.9
Migut.F01553 Erythranthe guttata HOM05D003116 ORTHO05D003619 1.3e-10 71.2 92 41.3
AUR62006711 Chenopodium quinoa HOM05D003116 ORTHO05D003619 1.7e-10 70.9 92 41.3
AUR62006712 Chenopodium quinoa HOM05D003116 ORTHO05D003619 1.7e-10 70.9 92 41.3
PSO357G0261 Papaver somniferum HOM05D003116 ORTHO05D003619 1.7e-10 70.9 92 39.1
Aa31LG7G11540 Aethionema arabicum HOM05D003116 ORTHO05D003619 2.2e-10 70.5 92 40.2
CAN.G541.24 Capsicum annuum HOM05D003116 ORTHO05D003619 2.2e-10 70.5 92 31.5
CBR_g24366 Chara braunii HOM05D003116 ORTHO05D003619 2.2e-10 70.5 92 38.0
COL.COLO4_06645 Corchorus olitorius HOM05D003116 ORTHO05D003619 2.2e-10 70.5 92 42.4
Haze_27288 Corylus avellana HOM05D003116 ORTHO05D003619 2.2e-10 70.5 92 38.0
C01p23890 Brassica napus HOM05D003116 ORTHO05D003619 2.8e-10 70.1 95 38.9
Carub.0007s1320 Capsella rubella HOM05D003116 ORTHO05D003619 2.8e-10 70.1 92 41.3
AUR62000365 Chenopodium quinoa HOM05D003116 ORTHO05D003619 2.8e-10 70.1 92 41.3
C07p55620 Brassica napus HOM05D003116 ORTHO05D003619 3.7e-10 69.7 92 41.3
ClCG11G007480 Citrullus lanatus HOM05D003116 ORTHO05D003619 3.7e-10 69.7 93 45.2
MD12G1258200 Malus domestica HOM05D003116 ORTHO05D003619 3.7e-10 69.7 93 45.2
VMungo0720G2849 Vigna mungo HOM05D003116 ORTHO05D003619 3.7e-10 69.7 93 40.9
CANSAT54G1522 Cannabis sativa HOM05D003116 ORTHO05D003619 4.8e-10 69.3 93 44.1
CARHR168750 Cardamine hirsuta HOM05D003116 ORTHO05D003619 4.8e-10 69.3 92 39.1
Rhsim09G0131200 Rhododendron simsii HOM05D003116 ORTHO05D003619 4.8e-10 69.3 77 44.2
RcHm_v2.0_Chr3g0448271 Rosa chinensis HOM05D003116 ORTHO05D003619 4.8e-10 69.3 93 41.9
Ah.13g070600 Amaranthus hybridus HOM05D003116 ORTHO05D003619 6.3e-10 68.9 92 41.3
Cfa006285 Carpinus fangiana HOM05D003116 ORTHO05D003619 6.3e-10 68.9 93 43.0
Duzib128G1204 Durio zibethinus HOM05D003116 ORTHO05D003619 6.3e-10 68.9 95 38.9
PRCOL_00002239 Prasinoderma coloniale HOM05D003116 ORTHO05D003619 6.3e-10 68.9 88 42.0
unitig_748.g8763 Utricularia gibba HOM05D003116 ORTHO05D003619 6.3e-10 68.9 79 43.0
ATR0743G097 Amborella trichopoda HOM05D003116 ORTHO05D003619 8.2e-10 68.6 92 38.0
MELO3C008594.2 Cucumis melo HOM05D003116 ORTHO05D003619 8.2e-10 68.6 93 44.1
PSO210G3889 Papaver somniferum HOM05D003116 ORTHO05D003619 8.2e-10 68.6 92 38.0
Phvul.010G077790 Phaseolus vulgaris HOM05D003116 ORTHO05D003619 8.2e-10 68.6 93 40.9
Sed0012106 Sechium edule HOM05D003116 ORTHO05D003619 1.1e-09 68.2 93 44.1
CiPaw.02G065200 Carya illinoinensis HOM05D003116 ORTHO05D003619 1.4e-09 67.8 93 41.9
CsaV3_2G010350 Cucumis sativus L. HOM05D003116 ORTHO05D003619 1.4e-09 67.8 93 44.1
Aa31LG7G11530 Aethionema arabicum HOM05D003116 ORTHO05D003619 1.8e-09 67.4 94 38.3
Aqoxy2G00490 Aquilegia oxysepala HOM05D003116 ORTHO05D003619 2.4e-09 67.0 70 40.0
Lj7C705G3 Lonicera japonica HOM05D003116 ORTHO05D003619 2.4e-09 67.0 75 46.7
MD04G1241200 Malus domestica HOM05D003116 ORTHO05D003619 2.4e-09 67.0 93 43.0
Sabra05G0155200 Salix brachista HOM05D003116 ORTHO05D003619 2.4e-09 67.0 102 38.2
BraA01t01835Z Brassica rapa HOM05D003116 ORTHO05D003619 4.1e-09 66.2 95 40.0
Haze_04522 Corylus avellana HOM05D003116 ORTHO05D003619 5.3e-09 65.9 93 40.9
Potri.004G092600 Populus trichocarpa HOM05D003116 ORTHO05D003619 7.0e-09 65.5 89 38.2
BraA03t14807Z Brassica rapa HOM05D003116 ORTHO05D003619 1.6e-08 64.3 94 39.4
FAN09G4293 Fragaria x ananassa HOM05D003116 ORTHO05D003619 3.5e-08 63.2 93 36.6
DCAR_014783 Daucus carota HOM05D003116 ORTHO05D003619 5.9e-08 62.4 70 44.3
FAN02G4520 Fragaria x ananassa HOM05D003116 ORTHO05D003619 7.7e-08 62.0 93 36.6
Sed0017776 Sechium edule HOM05D003116 ORTHO05D003619 1.0e-07 61.6 93 38.7
FAN05G0861 Fragaria x ananassa HOM05D003116 ORTHO05D003619 1.7e-07 60.8 93 35.5
FAN14G1801 Fragaria x ananassa HOM05D003116 ORTHO05D003619 1.7e-07 60.8 93 35.5
AT3G58390 Arabidopsis thaliana HOM05D003116 ORTHO05D003619 2.2e-07 60.5 108 37.0
FvH4_4g33100 Fragaria vesca HOM05D003116 ORTHO05D003619 2.9e-07 60.1 93 33.3
FAN07G2794 Fragaria x ananassa HOM05D003116 ORTHO05D003619 2.9e-07 60.1 93 33.3
FAN12G0407 Fragaria x ananassa HOM05D003116 ORTHO05D003619 2.9e-07 60.1 93 33.3
FAN22G1543 Fragaria x ananassa HOM05D003116 ORTHO05D003619 2.9e-07 60.1 93 33.3
AagrBONN_evm.TU.Sc2ySwM_228.5685 Anthoceros agrestis HOM05D003116 ORTHO05D003619 3.8e-07 59.7 102 34.3
FvH4_6g00790 Fragaria vesca HOM05D003116 ORTHO05D003619 3.8e-07 59.7 93 34.4
Sp7g11900 Schrenkiella parvula HOM05D003116 ORTHO05D003619 3.8e-07 59.7 75 42.7
BolC7t46042H Brassica oleracea HOM05D003116 ORTHO05D003619 6.5e-07 58.9 109 34.9
Pp3c4_11130 Physcomitrium patens HOM05D003116 ORTHO05D003619 1.5e-06 57.8 89 33.7
Cpa.g.c44271 Carica papaya HOM05D003116 ORTHO05D003619 1.9e-06 57.4 70 41.4
Cpa.g.sc123.20 Carica papaya HOM05D003116 ORTHO05D003619 1.9e-06 57.4 70 41.4
BcaB04g18111 Brassica carinata HOM05D003116 ORTHO05D003619 3.2e-06 56.6 138 27.5
Cre09.g388615 Chlamydomonas reinhardtii HOM05D003116 ORTHO05D003619 3.2e-06 56.6 69 36.2
Cfa023687 Carpinus fangiana HOM05D003116 ORTHO05D003619 5.5e-06 55.8 93 34.4


User provided reference genes

Program Settings