Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 3515.3 1805 100.0
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 3451.0 1805 98.6
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 3012.2 1818 84.7
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2999.5 1818 84.4
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2998.8 1819 84.2
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2996.8 1819 84.6
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2962.6 1815 84.4
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2936.0 1820 82.8
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2888.2 1827 81.9
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2888.2 1827 81.9
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2857.8 1819 81.9
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2837.4 1817 81.2
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2769.2 1821 79.9
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2659.4 1818 77.4
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2655.2 1877 74.5
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2652.1 1838 75.7
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2634.0 1855 74.4
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2610.5 1847 74.3
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2587.4 1832 73.5
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2576.2 1831 72.6
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2569.7 1830 73.6
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2560.8 1830 73.2
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2559.6 1806 74.1
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2555.0 1814 73.9
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2539.2 1828 73.2
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2531.9 1817 73.0
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2523.0 1825 72.3
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2521.1 1836 72.1
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2513.0 1826 72.1
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2512.6 1827 72.5
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2510.7 1829 71.9
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2507.2 1812 72.5
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2506.1 1832 71.8
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2503.0 1812 72.4
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2501.5 1815 72.0
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2476.0 1840 70.8
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2474.5 1862 70.3
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2472.2 1824 70.9
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2471.8 1317 97.0
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2468.7 1831 70.9
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2458.7 1308 96.7
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2453.3 1823 71.1
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2451.8 1836 70.5
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2451.4 1808 71.8
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2431.4 1837 69.2
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2429.4 1839 70.2
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2428.7 1840 70.0
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2418.7 1830 69.7
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2412.9 1836 69.5
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2410.2 1888 68.3
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2409.0 1840 69.9
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2397.9 1845 69.4
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2397.1 1831 68.9
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2365.5 1828 68.4
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2357.8 1849 68.4
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2357.0 1838 69.0
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2351.2 1781 70.4
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2349.3 1830 68.4
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2342.8 1836 67.0
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2335.8 1907 66.4
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2330.1 1806 68.0
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2317.7 1832 66.5
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2317.3 1834 66.6
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2290.0 1818 67.5
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2267.7 1825 65.7
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2265.7 1829 66.6
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2263.4 1820 66.5
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2256.9 1826 65.7
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2248.8 1821 66.6
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2242.2 1822 66.0
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2224.9 1821 65.6
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2210.6 1825 65.0
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2197.9 1845 64.4
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2196.0 1737 66.4
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2184.8 1811 65.8
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2166.0 1827 63.8
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2153.3 1177 94.6
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2127.8 1817 63.8
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2124.4 1815 63.7
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2124.0 1812 64.2
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2109.3 1816 63.1
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2100.5 1815 62.9
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2098.9 1811 63.2
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2094.3 1805 63.5
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2093.2 1810 62.6
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2068.1 1820 62.1
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 2050.4 1810 61.9
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2021.1 1826 61.8
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 2006.9 1756 62.2
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 2003.4 1813 61.8
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1989.2 1821 59.7
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1988.4 1807 61.0
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1988.4 1801 61.4
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1986.5 1801 61.3
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1974.5 1828 60.3
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1941.4 1861 57.9
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1907.5 1816 58.8
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1814.7 1828 55.4
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1792.3 1363 68.9
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1773.1 1835 53.8
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1687.2 1484 62.9
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1655.2 1685 55.5
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1649.0 1784 53.5
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1620.1 1569 59.5
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1600.9 1216 67.9
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1550.8 1359 63.0
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1501.9 1289 61.9
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1484.5 1775 50.9
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1360.9 1974 44.4
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1266.1 1168 60.9
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1251.1 1821 43.3
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1242.6 1352 54.2
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1238.0 997 66.4
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1206.4 1928 40.9
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1183.7 1987 39.8
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1165.2 1138 57.6
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1159.1 1926 39.1
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 7.2e-310 1068.1 874 64.2
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 5.3e-289 998.8 604 86.1
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 2.5e-270 936.8 544 91.2
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 6.3e-266 922.2 1360 44.8
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 9.5e-246 855.1 1481 39.0
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 1.3e-223 781.6 632 63.0
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 1.5e-214 751.5 396 97.0
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 1.4e-209 734.9 519 74.4
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 3.7e-205 720.3 480 76.9
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 9.4e-185 652.5 464 70.9
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 1.1e-177 629.0 484 71.1
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 1.8e-172 611.7 611 55.6
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 8.2e-165 586.3 381 79.3
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 4.2e-161 573.9 359 78.3
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 3.4e-158 564.3 431 65.0
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 3.1e-156 557.8 337 84.9
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 5.4e-156 557.0 485 62.1
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 6.1e-152 543.5 358 74.0
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 5.6e-137 493.8 377 70.3
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 2.0e-126 458.8 323 70.6
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 2.1e-120 438.7 426 58.0
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 7.1e-108 397.1 267 81.3
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 1.9e-105 389.0 254 80.3
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 2.2e-77 295.8 302 59.9
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 1.1e-76 293.5 294 59.9
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 2.1e-75 289.3 302 58.6
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 6.7e-50 204.5 132 74.2
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 1.0e-45 190.7 122 75.4
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 6.0e-22 111.7 118 51.7
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 4.3e-20 105.5 70 75.7
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 7.3e-20 104.8 69 75.4
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 1.8e-18 100.1 99 54.5
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 5.8e-17 95.1 563 22.4
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 1.4e-15 90.5 70 64.3
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 1.9e-15 90.1 204 27.9
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 4.1e-15 89.0 70 62.9
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 3.9e-13 82.4 66 62.1
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 5.1e-13 82.0 75 54.7
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 4.3e-12 79.0 39 84.6
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 7.3e-12 78.2 95 45.3
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 7.3e-12 78.2 34 97.1
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 7.3e-12 78.2 34 97.1
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 7.3e-12 78.2 34 97.1
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 7.3e-12 78.2 34 97.1
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 7.3e-12 78.2 34 97.1
Psat2g039160 Pisum sativum HOM05D000412 ORTHO05D000429 1.3e-08 67.4 58 67.2
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 1.4e-07 63.9 187 32.6
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 5.4e-07 62.0 204 26.0
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 5.4e-07 62.0 37 81.1


User provided reference genes

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