Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 3.3e-311 1070.8 535 100.0
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 2.4e-290 1001.5 604 86.1
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 7.8e-289 996.5 604 85.4
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 1.1e-287 992.6 604 85.3
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 6.6e-280 966.8 604 84.4
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 8.7e-280 966.5 604 83.6
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 3.0e-240 835.1 610 71.6
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 7.4e-239 830.5 609 71.1
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 1.7e-238 829.3 609 71.3
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 3.7e-238 828.2 610 71.0
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 1.1e-237 826.6 598 71.4
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 1.1e-237 826.6 598 71.4
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 1.9e-234 815.8 605 70.6
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 2.5e-234 815.5 609 70.4
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 5.5e-234 814.3 605 70.6
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 3.0e-232 808.5 610 70.3
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 1.1e-218 763.5 610 66.2
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 2.2e-214 749.2 608 65.5
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 6.3e-214 747.7 610 65.2
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 2.9e-211 738.8 600 66.3
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 1.2e-209 733.4 608 64.3
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 1.6e-209 733.0 596 65.6
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 1.0e-208 730.3 610 63.3
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 1.8e-208 729.6 608 64.0
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 2.3e-208 729.2 604 64.1
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 1.2e-207 726.9 597 65.3
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.0e-204 716.1 608 63.2
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 7.8e-204 714.1 608 63.2
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 1.3e-203 713.4 608 63.0
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 5.0e-203 711.4 610 61.8
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 3.3e-202 708.8 611 61.9
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 5.6e-202 708.0 598 62.2
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 2.1e-201 706.1 610 62.1
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 3.6e-201 705.3 610 61.5
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 1.8e-200 703.0 608 63.2
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 3.1e-200 702.2 604 61.6
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 3.4e-199 698.7 611 61.9
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 7.5e-199 697.6 606 62.2
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 4.9e-198 694.9 611 60.6
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 6.4e-198 694.5 606 62.5
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 1.6e-196 689.9 610 61.3
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 2.0e-196 689.5 605 61.2
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 3.5e-196 688.7 608 60.7
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 1.3e-195 686.8 609 60.1
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 5.0e-195 684.9 609 60.8
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 8.6e-195 684.1 605 61.5
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 2.1e-193 679.5 628 58.6
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 2.0e-191 672.9 610 58.7
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 3.4e-191 672.2 608 59.9
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 9.9e-191 670.6 609 59.6
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 9.9e-191 670.6 609 59.3
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 4.9e-190 668.3 605 59.5
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 4.9e-190 668.3 620 59.0
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 6.4e-190 667.9 609 59.6
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 9.2e-189 664.1 609 59.3
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 1.6e-188 663.3 612 58.8
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 2.7e-188 662.5 608 59.2
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 3.5e-188 662.1 609 59.3
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 6.0e-188 661.4 609 59.1
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 3.3e-186 655.6 609 58.8
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 1.2e-185 653.7 608 58.4
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 4.7e-185 651.7 610 57.4
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 3.1e-184 649.0 611 58.1
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 4.0e-184 648.7 614 58.5
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 1.5e-183 646.7 610 57.9
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 1.9e-181 639.8 619 57.2
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 1.9e-181 639.8 611 57.1
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 3.2e-181 639.0 611 57.4
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 3.2e-181 639.0 613 57.4
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 2.7e-180 636.0 614 56.5
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 3.5e-180 635.6 614 56.4
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 1.1e-178 630.6 613 56.1
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 5.6e-178 628.2 679 52.6
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 3.6e-177 625.5 580 58.6
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 3.1e-176 622.5 614 57.5
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 9.0e-176 620.9 612 57.4
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 4.9e-174 615.1 613 56.4
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 1.4e-173 613.6 613 55.1
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 1.6e-172 610.1 603 54.6
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 6.0e-172 608.2 604 55.1
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 8.7e-171 604.4 610 54.1
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 4.3e-170 602.1 598 56.0
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 7.3e-170 601.3 536 60.6
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 2.1e-169 599.7 582 56.9
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 1.1e-168 597.4 600 57.0
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 7.1e-165 584.7 593 55.6
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 2.1e-164 583.2 589 54.8
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 1.0e-163 580.9 582 55.8
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 1.6e-161 573.5 589 54.3
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 3.7e-161 572.4 589 54.3
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 1.4e-160 570.5 589 54.3
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 1.2e-159 567.4 591 55.5
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 2.2e-158 563.1 596 53.7
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 3.2e-157 559.3 589 53.8
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 6.7e-155 551.6 573 53.6
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 1.1e-154 550.8 593 52.8
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 1.9e-154 550.1 573 53.4
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 4.3e-154 548.9 598 53.2
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 5.6e-154 548.5 573 53.6
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 5.6e-154 548.5 573 53.6
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 1.1e-152 544.3 540 57.6
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 1.5e-151 540.4 610 49.7
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 4.5e-151 538.9 606 51.2
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 6.0e-148 528.5 601 50.2
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 5.3e-144 515.4 611 47.6
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 7.6e-143 511.5 329 76.3
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 2.2e-142 510.0 533 52.9
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 4.2e-141 505.8 366 70.2
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 6.9e-136 488.4 589 48.6
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 2.0e-135 486.9 327 73.1
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 2.7e-132 476.5 340 75.6
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 3.0e-131 473.0 607 45.5
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 7.7e-127 458.4 610 43.3
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 2.7e-116 423.3 323 63.8
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 2.0e-114 417.2 333 62.8
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 4.1e-112 409.5 414 52.7
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 2.2e-97 360.5 410 46.8
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 1.4e-96 357.8 410 46.6
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 5.4e-96 355.9 424 46.2
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 1.6e-95 354.4 400 46.0
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 4.2e-64 250.0 367 44.1
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 6.4e-41 172.9 279 41.9
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 4.6e-23 113.6 266 34.2
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 6.7e-22 109.8 118 50.8
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 1.5e-18 98.6 247 32.0
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 1.3e-17 95.5 102 53.9
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 4.4e-13 80.5 66 60.6
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 1.3e-09 68.9 65 56.9
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 1.4e-08 65.5 324 24.4
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 6.7e-06 56.6 127 35.4


User provided reference genes

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