Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 0.0e+00 2377.1 1479 100.0
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 0.0e+00 2083.9 1656 82.0
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 0.0e+00 1496.5 1497 69.3
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 0.0e+00 1481.1 1493 66.4
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 0.0e+00 1464.9 1489 68.4
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 0.0e+00 1446.8 1533 64.8
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 0.0e+00 1432.9 1493 64.4
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 0.0e+00 1377.1 1492 61.8
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 0.0e+00 1360.9 1501 61.8
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 0.0e+00 1314.3 1511 61.5
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 0.0e+00 1152.5 1558 56.0
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 0.0e+00 1144.0 1448 57.8
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 0.0e+00 1102.4 1535 53.1
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 0.0e+00 1090.9 1544 52.3
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 3.8e-309 1065.4 1520 52.1
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 3.3e-305 1052.4 1592 50.3
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 2.7e-299 1032.7 1496 52.5
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 2.8e-296 1022.7 1515 49.8
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 1.7e-293 1013.4 1528 50.7
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 1.4e-292 1010.4 1517 49.4
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 1.8e-290 1003.4 1503 50.9
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 2.2e-288 996.5 1518 47.8
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.8e-287 993.4 1516 47.7
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 2.4e-287 993.0 1516 49.5
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 3.1e-287 992.6 1514 47.7
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 7.0e-287 991.5 1503 51.8
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 1.0e-285 987.6 1555 49.6
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 1.7e-280 970.3 1573 46.8
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 3.7e-280 969.1 1482 48.0
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 4.5e-278 962.2 1519 49.4
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.5e-276 957.2 1543 46.3
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 1.9e-276 956.8 1580 45.9
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 1.5e-273 947.2 1450 50.3
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 2.6e-273 946.4 1551 47.1
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 4.4e-273 945.7 1508 48.2
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 9.8e-273 944.5 1537 46.5
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 8.3e-272 941.4 1609 45.6
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 1.3e-269 934.1 1512 49.4
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 4.0e-266 922.5 1511 47.5
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 5.4e-263 912.1 1524 48.9
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 1.6e-262 910.6 1577 46.0
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 3.9e-261 906.0 1544 45.3
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 4.3e-260 902.5 1523 48.3
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 5.6e-260 902.1 1527 46.4
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 4.0e-258 896.0 1575 47.0
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 4.4e-257 892.5 1530 47.6
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 3.0e-253 879.8 1525 46.0
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 1.2e-251 874.4 1520 45.3
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 2.8e-251 873.2 1509 44.2
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 3.6e-251 872.8 1528 46.1
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 1.9e-247 860.5 1452 47.8
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 1.2e-246 857.8 1521 46.4
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 1.0e-245 854.7 1460 46.0
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 3.3e-244 849.7 1527 44.3
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.8e-242 844.0 1601 44.2
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 5.1e-237 825.9 1516 45.4
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 2.9e-232 810.1 1526 43.4
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 2.4e-231 807.0 1550 40.7
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 2.3e-229 800.4 1511 42.3
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 1.9e-228 797.3 1566 43.6
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 6.2e-227 792.3 1301 46.9
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 2.2e-224 783.9 1557 43.2
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 6.4e-224 782.3 1505 45.6
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 1.9e-223 780.8 1545 42.0
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 1.2e-222 778.1 1530 42.7
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 3.0e-221 773.5 1403 42.8
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 9.0e-218 761.9 1539 41.3
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 1.6e-214 751.1 1546 44.6
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 8.7e-213 745.3 1490 42.8
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.9e-212 744.2 1571 41.2
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 3.7e-211 740.0 1500 42.9
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 4.0e-210 736.5 741 61.1
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 6.9e-210 735.7 1544 41.6
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 2.6e-209 733.8 1498 44.6
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 1.6e-206 724.5 1555 42.5
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 4.6e-206 723.0 1555 41.9
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 2.3e-205 720.7 1564 41.2
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 5.1e-205 719.5 1521 42.3
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 2.1e-203 714.1 1285 45.7
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 1.7e-200 704.5 1526 43.8
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 2.9e-200 703.7 1504 40.0
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 4.2e-199 699.9 1527 43.7
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 5.1e-197 693.0 1520 42.2
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 1.1e-194 685.3 1515 42.4
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 1.1e-194 685.3 1515 42.4
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 1.2e-193 681.8 1525 42.5
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 4.6e-190 669.8 1525 40.6
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 1.1e-188 665.2 1316 41.3
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 1.4e-186 658.3 1492 40.1
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 2.4e-186 657.5 1501 41.8
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 1.0e-176 625.5 1465 39.3
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 1.7e-176 624.8 1510 39.7
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 5.2e-165 586.6 1461 40.0
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 4.1e-162 577.0 1520 36.4
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.7e-155 555.1 1112 39.1
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 3.3e-151 540.8 1362 38.8
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 1.2e-148 532.3 1279 34.5
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 1.7e-144 518.5 1518 36.8
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.1e-142 511.5 604 57.5
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 4.7e-134 483.8 1362 35.7
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.6e-129 468.8 1358 37.4
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 5.1e-128 463.8 1517 38.0
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 6.6e-128 463.4 1417 31.5
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 1.8e-117 428.7 829 40.7
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 8.9e-117 426.4 638 46.6
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 4.6e-113 414.1 1359 32.2
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 1.6e-86 325.9 1538 30.6
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 1.4e-66 259.6 864 38.7
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 4.2e-66 258.1 777 32.7
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 3.9e-64 251.5 1543 25.9
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 2.4e-61 242.3 733 33.8
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 2.5e-58 232.3 331 51.4
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 9.7e-55 220.3 803 31.5
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 8.2e-54 217.2 687 32.2
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 2.9e-51 208.8 258 51.9
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 6.5e-51 207.6 1229 27.2
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 6.3e-38 164.5 375 40.3
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 6.6e-35 154.5 175 47.4
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 6.1e-33 147.9 92 73.9
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 2.6e-31 142.5 342 37.7
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 1.1e-29 137.1 140 60.7
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 1.2e-28 133.7 314 38.2
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 6.6e-27 127.9 87 72.4
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 9.5e-26 124.0 247 45.7
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 3.6e-25 122.1 280 44.6
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 5.2e-24 118.2 64 87.5
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 2.0e-20 106.3 343 34.1
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 2.5e-18 99.4 111 49.5
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 7.3e-18 97.8 69 65.2
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 1.2e-17 97.1 65 64.6
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 3.4e-15 89.0 306 32.0
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 6.4e-14 84.7 65 60.0
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 8.3e-14 84.3 79 53.2
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 1.1e-13 84.0 146 43.2
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 9.2e-13 80.9 80 52.5
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 4.6e-12 78.6 50 66.0
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 1.0e-11 77.4 315 23.8
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.7e-11 76.6 50 66.0
QL03p068414 Quercus lobata HOM05D004594 ORTHO05D005225 4.3e-10 72.0 57 57.9
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 8.1e-09 67.8 41 70.7
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 6.8e-08 64.7 89 42.7
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.2e-07 63.9 104 39.4
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.2e-07 63.9 103 38.8


User provided reference genes

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