Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 3.9e-222 774.6 431 100.0
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 1.5e-197 693.0 440 90.7
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 1.3e-129 467.2 326 84.7
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 1.9e-123 446.8 326 83.1
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 1.5e-120 437.2 327 82.6
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 1.6e-111 407.1 366 69.7
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 4.5e-109 399.1 291 81.4
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 9.9e-109 397.9 287 82.6
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 9.9e-109 397.9 306 77.1
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 9.3e-107 391.3 307 76.5
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 4.6e-106 389.0 369 69.6
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 1.0e-105 387.9 334 72.2
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 1.0e-105 387.9 334 72.5
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 1.5e-104 384.0 333 72.4
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 1.3e-103 380.9 333 70.9
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 8.1e-103 378.3 340 69.1
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 2.4e-102 376.7 267 83.5
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 6.9e-102 375.2 337 69.4
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 2.9e-100 369.8 302 74.5
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 4.9e-100 369.0 336 71.1
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 1.1e-99 367.9 334 70.7
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 5.5e-99 365.5 335 68.7
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 1.6e-98 364.0 333 69.4
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 7.9e-98 361.7 336 68.8
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 1.0e-97 361.3 332 69.3
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 1.8e-97 360.5 333 69.1
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 1.8e-97 360.5 334 67.4
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 2.3e-97 360.1 335 67.8
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 3.0e-97 359.8 357 65.5
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 5.1e-97 359.0 369 64.2
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 5.1e-97 359.0 349 65.9
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 8.7e-97 358.2 334 67.4
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 8.7e-97 358.2 334 68.0
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 1.1e-96 357.8 335 67.8
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 7.4e-96 355.1 333 68.8
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 7.4e-96 355.1 297 73.1
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 6.2e-95 352.1 297 72.4
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 3.1e-94 349.7 345 65.8
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.5e-93 347.4 306 70.9
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 1.5e-93 347.4 332 67.8
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 5.8e-93 345.5 306 70.6
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 5.8e-93 345.5 301 72.4
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 1.7e-92 344.0 317 70.0
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.8e-92 342.8 333 66.7
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 6.5e-92 342.0 337 67.1
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 1.6e-90 337.4 333 66.4
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 7.9e-90 335.1 335 66.6
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 1.9e-88 330.5 344 63.7
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 4.3e-88 329.3 298 69.1
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 1.3e-87 327.8 328 64.9
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 1.6e-87 327.4 335 65.1
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 4.8e-87 325.9 336 62.8
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.4e-86 324.3 294 68.0
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 3.1e-86 323.2 302 67.5
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.1e-86 323.2 299 67.6
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 5.3e-86 322.4 326 65.3
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 9.0e-86 321.6 336 63.7
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 7.7e-85 318.5 335 62.7
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 6.5e-84 315.5 335 60.9
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 3.6e-82 309.7 341 61.3
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 3.9e-81 306.2 334 61.7
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 4.3e-80 302.8 305 64.3
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 3.7e-79 299.7 286 65.4
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 1.4e-78 297.7 358 56.4
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 5.3e-78 295.8 358 56.1
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 9.1e-78 295.0 300 62.3
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.2e-77 294.7 243 71.2
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 5.9e-77 292.4 373 59.5
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 2.9e-76 290.0 319 61.1
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 5.0e-76 289.3 323 58.5
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 6.5e-76 288.9 300 61.3
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 7.2e-75 285.4 331 59.8
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 7.9e-74 282.0 323 57.3
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 3.0e-73 280.0 300 60.3
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 6.7e-73 278.9 325 58.5
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 2.8e-71 273.5 335 58.2
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 3.7e-71 273.1 274 62.8
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 1.1e-70 271.6 304 58.6
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 1.4e-70 271.2 337 55.5
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 1.4e-70 271.2 318 59.1
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 5.3e-70 269.2 284 63.0
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 7.0e-70 268.9 284 62.7
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.2e-69 268.1 327 56.3
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 1.5e-69 267.7 352 54.0
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 5.0e-68 262.7 354 55.4
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 6.5e-68 262.3 329 55.3
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.1e-66 257.3 284 61.3
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 3.6e-66 256.5 308 55.2
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 1.4e-65 254.6 334 53.3
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 3.9e-65 253.1 333 54.1
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 8.8e-65 251.9 226 69.0
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 1.5e-64 251.1 349 51.9
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 3.3e-64 250.0 349 51.6
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 9.7e-64 248.4 337 52.5
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 2.2e-63 247.3 358 51.1
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 4.8e-63 246.1 328 53.7
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 4.8e-63 246.1 328 53.7
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 1.4e-62 244.6 334 53.9
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 3.1e-62 243.4 334 53.6
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 9.1e-62 241.9 331 53.5
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 1.6e-61 241.1 334 53.3
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 1.7e-60 237.7 309 55.7
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 3.8e-60 236.5 262 58.8
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 5.0e-60 236.1 218 65.1
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.1e-59 235.0 317 51.4
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 4.2e-59 233.0 294 55.8
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 4.2e-59 233.0 336 52.1
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 9.4e-59 231.9 341 51.9
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 6.8e-57 225.7 232 59.9
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 1.3e-55 221.5 202 63.9
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 4.8e-55 219.5 372 47.6
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 1.8e-54 217.6 195 69.7
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 5.9e-53 212.6 209 61.7
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 5.9e-53 212.6 209 61.7
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 2.9e-52 210.3 278 54.0
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 5.2e-49 199.5 268 51.9
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 6.8e-49 199.1 326 49.1
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 7.5e-48 195.7 321 48.6
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.8e-46 191.0 253 53.0
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 1.6e-45 188.0 287 48.1
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 1.0e-44 185.3 467 36.8
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 2.3e-44 184.1 329 42.6
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 6.6e-44 182.6 329 45.3
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 8.6e-44 182.2 331 44.4
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.5e-43 181.4 178 65.2
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 2.1e-42 177.6 329 48.0
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 2.8e-42 177.2 311 41.8
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 3.6e-42 176.8 313 40.6
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 8.0e-42 175.6 186 61.3
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 2.3e-41 174.1 339 41.3
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 6.3e-39 166.0 167 59.9
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 8.3e-39 165.6 302 47.7
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 1.2e-32 145.2 149 63.1
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 7.8e-29 132.5 190 51.1
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 6.0e-21 106.3 139 46.0
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.2e-16 92.0 100 59.0
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 9.9e-16 89.0 149 40.9
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 3.0e-12 77.4 90 53.3
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 8.9e-09 65.9 85 55.3
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 2.9e-07 60.8 169 31.4
Zm00001eb060940 Zea mays HOM05D004913 ORTHO05D006150 6.4e-07 59.7 59 66.1


User provided reference genes

Program Settings