Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 1.1e-303 1045.8 534 100.0
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 1.4e-232 809.7 416 97.1
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 1.1e-165 587.4 413 72.6
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 1.1e-165 587.4 413 72.4
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 4.2e-165 585.5 421 72.4
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 7.6e-159 564.7 418 70.3
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 3.8e-158 562.4 412 67.2
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 4.0e-152 542.3 424 65.8
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 2.6e-151 539.7 412 65.0
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 1.2e-148 530.8 417 66.9
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 1.0e-147 527.7 402 69.7
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 3.0e-147 526.2 402 67.7
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 3.7e-145 519.2 417 65.2
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 6.2e-145 518.5 401 67.3
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 9.3e-141 504.6 422 65.6
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 1.0e-131 474.6 420 59.0
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 1.0e-131 474.6 404 61.6
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 2.5e-130 469.9 401 61.8
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 7.4e-130 468.4 406 60.3
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 7.4e-130 468.4 403 60.5
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.7e-129 467.2 406 60.3
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 4.8e-129 465.7 339 71.4
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 1.1e-128 464.5 426 58.0
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 1.4e-128 464.2 462 54.8
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 2.4e-128 463.4 440 57.0
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 6.9e-128 461.8 419 58.0
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.2e-127 461.1 404 59.7
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.2e-127 461.1 406 59.6
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.4e-127 459.5 406 59.6
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 5.9e-127 458.8 415 59.5
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 1.3e-126 457.6 399 61.7
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 6.5e-126 455.3 406 60.8
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 2.7e-124 449.9 412 59.0
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 4.7e-124 449.1 384 61.5
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 6.1e-124 448.7 432 56.2
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 7.9e-124 448.4 440 56.4
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 1.0e-123 448.0 419 57.3
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.8e-123 447.2 408 58.3
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 3.0e-123 446.4 401 60.1
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 3.3e-122 443.0 419 57.8
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 3.3e-122 443.0 405 59.8
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 4.8e-121 439.1 418 56.5
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.4e-120 436.8 417 56.8
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 4.1e-120 436.0 304 71.7
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 9.1e-120 434.9 426 54.2
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 9.1e-120 434.9 417 56.8
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 5.9e-119 432.2 414 55.3
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 2.9e-118 429.9 391 58.1
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.2e-117 426.4 427 54.8
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 1.6e-116 424.1 425 54.6
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 2.0e-114 417.2 414 53.9
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 2.8e-113 413.3 418 54.8
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 8.2e-113 411.8 406 55.2
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.1e-112 411.4 409 53.5
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 1.4e-112 411.0 418 54.5
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 3.1e-112 409.8 409 54.3
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 3.1e-112 409.8 509 48.3
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 5.3e-112 409.1 453 50.8
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 2.9e-110 403.3 417 54.4
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 1.1e-109 401.4 433 52.4
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 7.2e-109 398.7 415 54.5
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 4.7e-108 396.0 401 52.4
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 6.7e-107 392.1 412 53.2
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 1.5e-106 391.0 405 54.6
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 9.7e-106 388.3 423 53.0
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 9.7e-106 388.3 417 53.2
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 3.7e-105 386.3 439 49.0
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.8e-105 386.0 278 67.3
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 6.3e-105 385.6 408 53.2
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 1.1e-104 384.8 381 53.0
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 1.8e-104 384.0 420 53.8
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 3.1e-104 383.3 409 53.3
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 4.1e-104 382.9 401 52.4
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 4.1e-104 382.9 414 51.0
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 2.0e-103 380.6 406 52.0
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 2.7e-103 380.2 398 52.5
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 7.7e-103 378.6 426 48.8
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 1.0e-102 378.3 405 51.9
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.5e-101 374.4 406 50.7
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 4.2e-101 372.9 419 51.3
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 4.2e-101 372.9 419 51.3
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 4.2e-101 372.9 415 51.8
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 7.2e-101 372.1 422 50.7
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 7.2e-101 372.1 422 50.7
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 9.4e-101 371.7 357 56.0
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 4.7e-100 369.4 351 56.1
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 1.0e-99 368.2 449 49.2
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 1.4e-99 367.9 407 48.9
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 5.2e-99 365.9 408 50.5
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 1.2e-98 364.8 397 52.6
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 2.4e-96 357.1 414 50.2
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 1.2e-95 354.8 421 48.9
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 1.6e-95 354.4 287 60.6
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 3.5e-95 353.2 430 48.4
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 7.7e-95 352.1 396 49.5
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 1.3e-94 351.3 412 49.0
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 1.5e-93 347.8 407 47.4
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 2.5e-93 347.1 420 46.4
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 3.3e-93 346.7 516 41.7
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 9.8e-90 335.1 425 45.9
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 2.2e-89 334.0 422 46.4
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 3.7e-89 333.2 425 46.4
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 4.9e-89 332.8 419 46.1
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 4.3e-85 319.7 413 46.0
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 8.9e-83 312.0 428 44.2
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 5.8e-82 309.3 276 58.3
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 6.4e-81 305.8 276 58.0
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 6.4e-81 305.8 276 58.0
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 8.3e-81 305.4 278 58.3
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 3.2e-80 303.5 278 57.9
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 1.8e-75 287.7 391 42.2
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.0e-74 284.3 288 53.8
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 8.6e-70 268.9 295 51.2
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 1.6e-68 264.6 223 62.8
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 1.3e-65 255.0 339 44.8
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 2.9e-65 253.8 343 43.1
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 1.1e-64 251.9 317 44.2
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 6.0e-63 246.1 260 47.7
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 5.1e-62 243.0 280 46.8
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 7.6e-58 229.2 329 44.1
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 2.4e-56 224.2 167 65.3
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 2.3e-54 217.6 188 58.0
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 1.5e-53 214.9 286 41.6
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 1.1e-51 208.8 285 42.5
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 1.3e-49 201.8 302 40.4
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 4.6e-47 193.4 176 59.7
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 8.7e-46 189.1 276 42.0
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.6e-45 185.7 137 66.4
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 1.6e-44 184.9 137 68.6
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 2.8e-44 184.1 256 42.2
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 2.9e-41 174.1 123 67.5
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 4.2e-40 170.2 271 37.6
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 1.9e-37 161.4 243 38.7
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 4.3e-37 160.2 99 71.7
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.0e-33 149.1 104 68.3
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.2e-33 147.9 99 69.7
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 8.7e-30 136.0 186 46.8
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.3e-28 132.1 181 40.9
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 1.8e-27 128.3 69 84.1
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.1e-27 127.5 181 40.9
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 3.8e-25 120.6 221 39.4
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 6.5e-25 119.8 214 37.4
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 4.6e-23 113.6 102 52.0
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 1.1e-21 109.0 73 71.2
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 1.5e-21 108.6 70 71.4
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 4.3e-21 107.1 266 29.3
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 2.4e-19 101.3 134 45.5
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.6e-18 97.8 63 65.1
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 5.9e-18 96.7 169 34.9
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.7e-17 95.1 68 61.8
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.2e-17 94.7 58 70.7
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 6.1e-15 86.7 96 51.0
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.0e-14 84.3 167 39.5
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.1e-11 75.9 48 62.5
Atru.chr1.1384 Acer truncatum HOM05D004413 ORTHO05D005199 2.0e-10 71.6 97 46.4
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.9e-10 70.1 63 54.0
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.7e-09 68.6 53 58.5
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.9e-09 67.8 66 48.5
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 2.5e-08 64.7 74 50.0
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.8e-06 56.2 44 56.8


User provided reference genes

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