Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 8.3e-143 510.4 262 100.0
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 1.7e-87 326.6 178 95.5
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.4e-73 280.4 274 60.2
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.4e-73 279.6 274 60.2
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 3.4e-59 232.6 177 72.3
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 2.0e-56 223.4 166 71.7
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 1.5e-54 217.2 172 68.6
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 5.5e-54 215.3 176 64.2
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 8.0e-53 211.5 272 49.3
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.8e-52 210.3 176 63.1
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 2.3e-52 209.9 204 56.4
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.8e-49 200.3 175 61.7
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 4.1e-49 199.1 197 57.9
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 4.5e-48 195.7 177 60.5
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 3.9e-47 192.6 177 59.9
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 7.3e-46 188.3 177 58.2
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 3.6e-45 186.0 177 54.2
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 2.6e-43 179.9 172 59.3
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.3e-42 177.6 176 56.2
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 1.3e-42 177.6 169 53.8
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 2.2e-42 176.8 170 53.5
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.4e-41 174.1 186 51.1
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 1.4e-41 174.1 164 56.1
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.9e-41 173.7 176 53.4
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.9e-41 173.7 182 52.2
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 3.2e-41 172.9 173 51.4
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 7.0e-41 171.8 180 52.2
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 1.2e-40 171.0 172 51.7
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 1.6e-40 170.6 170 52.9
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 2.7e-40 169.9 173 53.8
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 3.5e-40 169.5 172 52.3
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 3.5e-40 169.5 166 52.4
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 3.5e-40 169.5 182 52.2
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 4.6e-40 169.1 159 54.7
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 1.0e-39 167.9 177 50.8
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 1.0e-39 167.9 170 50.0
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.3e-39 167.5 173 53.2
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 1.7e-39 167.2 181 50.3
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 1.7e-39 167.2 172 51.7
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.7e-39 167.2 171 52.6
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 5.0e-39 165.6 190 48.4
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 6.6e-39 165.2 176 51.7
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 8.6e-39 164.9 268 37.7
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 3.3e-38 162.9 174 51.1
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 9.5e-38 161.4 149 53.7
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 2.8e-37 159.8 151 53.0
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.7e-37 159.1 149 53.0
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 6.2e-37 158.7 165 49.7
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 8.0e-37 158.3 149 53.0
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 1.4e-36 157.5 184 44.6
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.4e-36 157.5 177 48.6
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 2.3e-36 156.8 182 44.5
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 3.1e-36 156.4 172 50.6
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 8.9e-36 154.8 180 46.7
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 1.5e-35 154.1 152 48.7
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 3.4e-35 152.9 183 47.5
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 5.8e-35 152.1 149 51.0
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 7.5e-35 151.8 149 50.3
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 9.8e-35 151.4 176 47.7
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 2.2e-34 150.2 178 46.6
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 2.2e-34 150.2 188 41.5
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 2.2e-34 150.2 188 44.1
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 6.4e-34 148.7 149 49.0
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 6.4e-34 148.7 149 49.0
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 8.3e-34 148.3 179 45.8
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.1e-33 147.9 149 47.7
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 3.2e-33 146.4 170 45.3
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 1.2e-32 144.4 182 44.5
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 2.7e-32 143.3 156 46.2
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 7.8e-32 141.7 145 51.7
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 1.3e-31 141.0 184 41.3
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 5.1e-31 139.0 146 45.9
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 8.6e-31 138.3 228 36.0
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.5e-30 137.5 144 49.3
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.5e-30 137.5 178 41.6
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 1.9e-30 137.1 146 45.2
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 1.9e-30 137.1 186 42.5
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 2.5e-30 136.7 141 51.8
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.5e-30 136.7 182 42.9
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 4.3e-30 136.0 148 48.6
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 5.6e-30 135.6 184 40.8
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.6e-29 134.0 148 44.6
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.6e-29 134.0 148 44.6
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.1e-29 133.7 188 41.0
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.1e-29 133.7 186 43.5
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 2.8e-29 133.3 174 41.4
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 3.6e-29 132.9 178 40.4
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 3.6e-29 132.9 173 39.9
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.6e-29 132.9 194 40.2
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 4.7e-29 132.5 152 44.7
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 8.1e-29 131.7 147 43.5
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.1e-28 131.3 178 40.4
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 1.8e-28 130.6 184 38.6
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.3e-28 130.2 124 50.0
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 3.1e-28 129.8 178 39.3
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 8.9e-28 128.3 186 43.0
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 8.9e-28 128.3 147 42.2
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 8.9e-28 128.3 147 42.2
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 1.2e-27 127.9 174 40.2
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.2e-27 127.9 179 40.2
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 2.6e-27 126.7 191 43.5
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.6e-27 126.7 144 43.8
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 3.4e-27 126.3 188 38.3
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 1.7e-26 124.0 178 38.8
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.2e-26 123.6 178 38.8
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 1.4e-25 120.9 152 42.1
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 3.2e-25 119.8 203 36.5
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 4.1e-25 119.4 168 41.7
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 1.6e-24 117.5 152 41.4
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.6e-24 117.5 152 41.4
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 2.7e-24 116.7 176 35.8
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 6.0e-24 115.5 152 40.1
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.0e-23 113.2 152 39.5
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 1.5e-22 110.9 251 28.3
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 2.5e-22 110.2 211 35.1
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 2.5e-22 110.2 179 36.9
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.3e-22 109.4 176 35.8
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 7.3e-22 108.6 172 39.0
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 4.7e-21 105.9 192 36.5
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 6.2e-21 105.5 162 40.1
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.8e-20 104.0 154 37.0
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 2.4e-20 103.6 189 37.6
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 3.1e-20 103.2 202 32.2
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.2e-20 102.4 235 32.8
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 5.8e-19 99.0 143 42.0
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.9e-17 94.0 85 55.3
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.2e-17 93.2 145 40.0
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 3.2e-17 93.2 246 28.0
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 2.3e-15 87.0 80 53.8
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 3.9e-15 86.3 101 46.5
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 8.7e-15 85.1 109 44.0
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 8.7e-15 85.1 122 39.3
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 1.6e-13 80.9 178 31.5
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 3.6e-13 79.7 86 43.0
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 6.2e-13 79.0 99 45.5
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 2.6e-11 73.6 129 33.3
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 4.2e-09 66.2 65 50.8
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 7.1e-09 65.5 65 49.2
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 2.7e-08 63.5 98 37.8
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 2.3e-07 60.5 106 36.8
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.9e-06 57.4 107 31.8


User provided reference genes

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