Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 1.4e-196 689.5 354 100.0
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 1.1e-195 686.4 354 99.4
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 6.1e-181 637.5 354 91.5
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 6.6e-167 590.9 332 90.4
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 4.7e-165 584.7 332 89.8
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 8.9e-164 580.5 336 86.9
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 5.7e-163 577.8 349 85.4
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 1.7e-162 576.2 353 83.9
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 2.2e-162 575.9 336 87.2
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 3.7e-162 575.1 350 85.1
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 6.4e-162 574.3 337 85.2
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 3.5e-160 568.5 332 86.7
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 6.6e-159 564.3 341 82.7
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 2.5e-158 562.4 345 82.0
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 5.6e-158 561.2 349 80.8
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 9.5e-158 560.5 374 79.7
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 1.6e-157 559.7 331 83.4
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 1.6e-157 559.7 349 81.4
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 2.1e-157 559.3 331 84.6
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 6.2e-157 557.8 349 80.8
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.1e-156 557.0 337 83.7
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.8e-156 556.2 340 83.2
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.3e-156 555.8 340 83.2
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 3.1e-156 555.4 338 82.0
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 3.1e-156 555.4 353 79.6
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 5.2e-156 554.7 340 83.2
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 2.0e-155 552.7 344 80.5
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 2.0e-155 552.7 344 81.1
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.6e-155 552.4 337 82.8
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 5.8e-155 551.2 346 80.1
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 7.5e-155 550.8 328 82.9
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 2.2e-154 549.3 348 79.3
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.9e-154 548.9 343 79.9
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 3.7e-154 548.5 329 83.0
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 6.4e-154 547.7 340 80.6
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 8.3e-154 547.4 349 79.4
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 1.4e-153 546.6 355 77.5
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 1.9e-153 546.2 344 81.4
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 4.1e-153 545.0 338 81.4
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 4.1e-153 545.0 327 83.2
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 5.4e-153 544.7 356 77.8
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 9.2e-153 543.9 341 80.6
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.6e-152 543.1 330 81.5
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 1.6e-152 543.1 331 82.2
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 2.0e-152 542.7 327 82.0
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 2.0e-152 542.7 343 79.6
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 2.7e-152 542.3 349 78.2
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 3.5e-152 542.0 343 79.0
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 3.5e-152 542.0 351 77.2
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 3.5e-152 542.0 340 79.7
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 4.6e-152 541.6 336 79.8
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 7.8e-152 540.8 327 81.7
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 7.8e-152 540.8 327 81.7
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 7.8e-152 540.8 327 81.7
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 7.8e-152 540.8 336 81.2
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.0e-151 540.4 337 79.8
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.0e-151 540.4 339 80.2
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 1.3e-151 540.0 334 80.5
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 1.3e-151 540.0 341 79.5
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 1.3e-151 540.0 330 81.2
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 1.3e-151 540.0 329 80.5
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.3e-151 540.0 346 78.9
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 1.7e-151 539.7 340 79.4
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.7e-151 539.7 330 81.2
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.7e-151 539.7 330 81.2
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.7e-151 539.7 330 81.2
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 3.0e-151 538.9 348 78.4
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 3.0e-151 538.9 331 81.3
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 3.9e-151 538.5 348 77.3
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 5.0e-151 538.1 327 81.3
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 6.6e-151 537.7 348 77.6
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 8.6e-151 537.3 350 77.4
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 8.6e-151 537.3 348 77.6
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 1.5e-150 536.6 330 82.1
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 4.3e-150 535.0 335 79.7
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 4.3e-150 535.0 346 78.3
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 9.5e-150 533.9 348 77.3
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 9.5e-150 533.9 327 80.4
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 1.6e-149 533.1 346 78.0
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 1.6e-149 533.1 351 77.5
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.8e-149 532.3 330 80.0
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 3.6e-149 531.9 346 77.7
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 3.6e-149 531.9 346 77.7
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 3.6e-149 531.9 346 78.3
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 4.7e-149 531.6 328 80.8
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 6.2e-149 531.2 327 80.4
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 8.1e-149 530.8 326 81.3
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 8.1e-149 530.8 348 77.3
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-148 529.6 347 77.2
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 2.3e-148 529.3 347 78.4
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 8.9e-148 527.3 366 74.0
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 1.2e-147 526.9 378 72.8
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 4.4e-147 525.0 323 80.5
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 8.3e-146 520.8 346 77.2
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 4.1e-145 518.5 370 73.5
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 3.5e-144 515.4 286 90.2
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 7.8e-144 514.2 341 76.2
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 3.9e-143 511.9 331 76.1
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 5.6e-142 508.1 331 76.4
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 9.5e-142 507.3 299 83.9
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 4.7e-141 505.0 323 78.0
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 8.1e-141 504.2 353 74.2
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.4e-140 502.7 300 83.7
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.2e-139 500.4 412 65.0
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 6.4e-138 494.6 330 76.7
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 2.4e-137 492.7 328 77.1
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.1e-134 483.8 330 72.1
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 2.4e-132 476.1 326 74.8
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 6.9e-132 474.6 383 66.1
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 1.5e-131 473.4 361 67.6
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 2.6e-131 472.6 329 73.3
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 1.4e-129 466.8 341 71.6
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 9.3e-129 464.2 348 68.7
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 3.6e-125 452.2 321 69.2
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 9.0e-124 447.6 327 67.0
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 1.1e-121 440.7 321 67.0
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 2.4e-121 439.5 347 68.6
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 3.2e-121 439.1 261 83.1
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 2.1e-120 436.4 321 67.0
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 4.6e-120 435.3 321 66.7
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 1.3e-119 433.7 287 78.4
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 1.3e-117 427.2 241 89.6
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 3.1e-116 422.5 330 64.5
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.3e-116 421.8 367 62.1
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 9.0e-116 421.0 302 69.2
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.8e-114 415.6 261 78.5
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 2.3e-111 406.4 330 61.2
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 3.0e-111 406.0 322 63.0
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 3.8e-106 389.0 328 63.7
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 4.9e-106 388.7 245 79.2
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 5.5e-105 385.2 238 81.1
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 3.5e-104 382.5 334 62.0
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 5.1e-103 378.6 240 80.8
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.7e-103 378.3 368 56.5
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 8.7e-103 377.9 300 62.7
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.5e-102 377.1 274 66.4
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.6e-99 366.3 272 70.2
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.8e-98 362.5 355 58.6
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.2e-97 359.0 245 75.1
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 4.2e-97 359.0 249 72.7
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.4e-95 354.0 233 76.0
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 7.4e-94 348.2 339 54.0
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.1e-84 317.8 201 79.6
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 2.1e-80 303.5 164 92.1
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 2.4e-76 290.0 203 77.3
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 5.5e-73 278.9 286 57.7
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 2.2e-61 240.4 256 57.8
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 3.1e-60 236.5 336 44.6
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 7.7e-59 231.9 161 68.9
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 3.6e-56 223.0 133 81.2
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 3.3e-49 199.9 132 74.2
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 1.2e-48 198.0 124 77.4
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 9.8e-46 188.3 326 41.4
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 1.1e-44 184.9 233 40.8
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 2.4e-44 183.7 101 86.1
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 8.6e-42 175.3 96 87.5
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 1.2e-40 171.4 87 96.6
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.6e-40 171.0 210 46.7
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.0e-38 164.1 103 75.7
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.0e-35 152.5 96 71.9
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 1.5e-33 147.9 88 77.3
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.9e-33 147.5 96 79.2
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 9.5e-33 145.2 78 92.3
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.2e-32 144.8 110 72.7
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 1.2e-30 138.3 76 86.8
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 3.7e-29 133.3 189 50.3
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 1.0e-18 98.6 62 80.6
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 1.0e-18 98.6 73 75.3
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 5.1e-18 96.3 72 62.5
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 8.7e-18 95.5 68 70.6
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.1e-17 95.1 73 58.9
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 8.1e-16 89.0 73 61.6
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 1.5e-14 84.7 78 65.4
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 1.0e-10 72.0 47 78.7


User provided reference genes

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