Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.898NT1 Arachis hypogaea HOM05D002593 ORTHO05D006476 1.0e-63 246.5 119 100.0
arahy.Tifrunner.gnm1.ann1.06HUX3 Arachis hypogaea HOM05D002593 ORTHO05D006476 1.4e-28 129.8 72 90.3
arahy.Tifrunner.gnm1.ann1.3HC2CW Arachis hypogaea HOM05D002593 ORTHO05D006476 6.9e-28 127.5 72 88.9
Lalb_Chr23g0272731 Lupinus albus HOM05D002593 ORTHO05D006476 1.1e-14 83.6 72 63.9
Lj4g0024429 Lotus japonicus HOM05D002593 ORTHO05D006476 5.7e-14 81.3 73 57.5
Glyma.05G195900 Glycine max HOM05D002593 ORTHO05D006476 8.2e-13 77.4 73 56.2
Glyma.08G003500 Glycine max HOM05D002593 ORTHO05D006476 3.1e-12 75.5 73 56.2
Psat7g043240 Pisum sativum HOM05D002593 ORTHO05D006476 4.1e-12 75.1 73 57.5
Gohir.D09G005200 Gossypium hirsutum HOM05D002593 ORTHO05D006476 5.3e-12 74.7 74 56.8
Gorai.006G006800 Gossypium raimondii HOM05D002593 ORTHO05D006476 5.3e-12 74.7 74 56.8
Medtr8g094800 Medicago truncatula HOM05D002593 ORTHO05D006476 5.3e-12 74.7 73 56.2
Actinidia06597 Actinidia chinensis HOM05D002593 ORTHO05D006476 6.9e-12 74.3 73 57.5
TPR.G37380 Trifolium pratense HOM05D002593 ORTHO05D006476 1.5e-11 73.2 73 56.2
VMungo0251G1864 Vigna mungo HOM05D002593 ORTHO05D006476 1.5e-11 73.2 73 53.4
Gohir.A09G006100 Gossypium hirsutum HOM05D002593 ORTHO05D006476 2.0e-11 72.8 74 56.8
Phvul.002G276400 Phaseolus vulgaris HOM05D002593 ORTHO05D006476 2.0e-11 72.8 73 53.4
COL.COLO4_12118 Corchorus olitorius HOM05D002593 ORTHO05D003294 2.6e-11 72.4 73 56.2
CSS0001259 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 3.4e-11 72.0 73 56.2
CSS0038308 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 3.4e-11 72.0 73 56.2
Duzib187G0031 Durio zibethinus HOM05D002593 ORTHO05D006476 3.4e-11 72.0 74 55.4
Ca_17607_v3 Cicer arietinum L. HOM05D002593 ORTHO05D006476 4.5e-11 71.6 73 54.8
CSS0004310 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 7.7e-11 70.9 73 56.2
CSS0033070 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 7.7e-11 70.9 73 56.2
CiPaw.07G075900 Carya illinoinensis HOM05D002593 ORTHO05D006476 1.3e-10 70.1 73 56.2
Lalb_Chr12g0202891 Lupinus albus HOM05D002593 ORTHO05D006476 1.7e-10 69.7 73 54.8
Oeu042316.1 Olea europaea HOM05D002593 ORTHO05D006476 2.2e-10 69.3 73 54.8
Glyma.04G207200 Glycine max HOM05D002593 ORTHO05D006476 2.9e-10 68.9 72 58.3
Lj1A109G43 Lonicera japonica HOM05D002593 ORTHO05D006476 3.8e-10 68.6 73 56.2
TWI79G0542 Tripterygium wilfordii HOM05D002593 ORTHO05D006476 3.8e-10 68.6 73 50.7
MELO3C008996.2 Cucumis melo HOM05D002593 ORTHO05D006476 8.5e-10 67.4 73 57.5
Dinv07259 Davidia involucrata HOM05D002593 ORTHO05D006476 1.1e-09 67.0 73 56.2
Rhsim10G0129800 Rhododendron simsii HOM05D002593 ORTHO05D006476 1.4e-09 66.6 72 52.8
VMungo1309G1997 Vigna mungo HOM05D002593 ORTHO05D006476 1.4e-09 66.6 72 56.9
CsaV3_4G031190 Cucumis sativus L. HOM05D002593 ORTHO05D006476 1.9e-09 66.2 73 57.5
Thecc.01G142600 Theobroma cacao HOM05D002593 ORTHO05D006476 2.5e-09 65.9 73 54.8
Potri.005G070700 Populus trichocarpa HOM05D002593 ORTHO05D006476 3.2e-09 65.5 73 49.3
Phvul.009G151900 Phaseolus vulgaris HOM05D002593 ORTHO05D006476 4.2e-09 65.1 72 55.6
Eucgr.I00094 Eucalyptus grandis HOM05D002593 ORTHO05D006476 5.5e-09 64.7 73 57.5
Cfa002122 Carpinus fangiana HOM05D002593 ORTHO05D006476 7.2e-09 64.3 73 53.4
PGR119G1937 Punica granatum HOM05D002593 ORTHO05D006476 7.2e-09 64.3 73 52.1
TAR381G0271 Trochodendron aralioides HOM05D002593 ORTHO05D006476 7.2e-09 64.3 73 53.4
TAR381G0660 Trochodendron aralioides HOM05D002593 ORTHO05D006476 7.2e-09 64.3 73 53.4
GSVIVG01022377001 Vitis vinifera HOM05D002593 ORTHO05D006476 7.2e-09 64.3 73 57.5
AUR62006910 Chenopodium quinoa HOM05D002593 ORTHO05D006476 9.4e-09 63.9 73 52.1
ClCG04G001200 Citrullus lanatus HOM05D002593 ORTHO05D006476 9.4e-09 63.9 72 54.2
Ciclev10000418m.g Citrus clementina HOM05D002593 ORTHO05D006476 1.2e-08 63.5 73 52.1
DCAR_000693 Daucus carota HOM05D002593 ORTHO05D006476 1.2e-08 63.5 73 53.4
Sabra05G0057500 Salix brachista HOM05D002593 ORTHO05D006476 1.2e-08 63.5 73 49.3
vmacro12772 Vaccinium macrocarpon HOM05D002593 ORTHO05D006476 1.2e-08 63.5 73 52.1
Atru.chr4.1131 Acer truncatum HOM05D002593 ORTHO05D006476 2.1e-08 62.8 72 51.4
Carub.0006s0769 Capsella rubella HOM05D002593 ORTHO05D006476 2.1e-08 62.8 73 46.6
MSTRG.3600 Avicennia marina HOM05D002593 ORTHO05D006476 2.7e-08 62.4 73 53.4
Peaxi162Scf00076g01057 Petunia axillaris HOM05D002593 ORTHO05D006476 2.7e-08 62.4 73 52.1
Sp6g34150 Schrenkiella parvula HOM05D002593 ORTHO05D006476 2.7e-08 62.4 74 48.6
Ah.06g188520 Amaranthus hybridus HOM05D002593 ORTHO05D006476 3.6e-08 62.0 73 54.8
BcaB08g37230 Brassica carinata HOM05D002593 ORTHO05D006476 3.6e-08 62.0 78 51.3
C09p68260 Brassica napus HOM05D002593 ORTHO05D006476 3.6e-08 62.0 78 51.3
BolC9t59574H Brassica oleracea HOM05D002593 ORTHO05D006476 3.6e-08 62.0 78 51.3
ECA248G3631 Erigeron canadensis HOM05D002593 ORTHO05D006476 3.6e-08 62.0 73 49.3
Migut.L00269 Erythranthe guttata HOM05D002593 ORTHO05D006476 3.6e-08 62.0 73 53.4
AUR62000559 Chenopodium quinoa HOM05D002593 ORTHO05D006476 4.7e-08 61.6 73 50.7
Thhalv10015845m.g Eutrema salsugineum HOM05D002593 ORTHO05D006476 4.7e-08 61.6 79 43.0
PGSC0003DMG401014557 Solanum tuberosum HOM05D002593 ORTHO05D006476 4.7e-08 61.6 73 52.1
SalBow7G4483 Salvia bowleyana HOM05D002593 ORTHO05D006476 6.1e-08 61.2 73 49.3
Cc11_g02090 Coffea canephora HOM05D002593 ORTHO05D006476 7.9e-08 60.8 73 50.7
Sed0011819 Sechium edule HOM05D002593 ORTHO05D006476 7.9e-08 60.8 72 52.8
Solyc05g009080.4 Solanum lycopersicum HOM05D002593 ORTHO05D006476 7.9e-08 60.8 73 52.1
AT5G08720 Arabidopsis thaliana HOM05D002593 ORTHO05D006476 1.0e-07 60.5 73 46.6
Hma1.2p1_0619F.1_g190360 Hydrangea macrophylla HOM05D002593 ORTHO05D006476 1.0e-07 60.5 73 53.4
A10p28060 Brassica napus HOM05D002593 ORTHO05D006476 1.4e-07 60.1 74 50.0
BraA10t44855Z Brassica rapa HOM05D002593 ORTHO05D006476 1.4e-07 60.1 74 50.0
CANSAT01G0469 Cannabis sativa HOM05D002593 ORTHO05D006476 1.4e-07 60.1 73 52.1
RcHm_v2.0_Chr5g0020561 Rosa chinensis HOM05D002593 ORTHO05D006476 1.4e-07 60.1 73 45.2
Cpa.g.sc37.46 Carica papaya HOM05D002593 ORTHO05D006476 1.8e-07 59.7 72 54.2
HanXRQChr03g0087641 Helianthus annuus HOM05D002593 ORTHO05D006476 1.8e-07 59.7 73 47.9
AL6G19470 Arabidopsis lyrata HOM05D002593 ORTHO05D006476 2.3e-07 59.3 73 45.2
Nitab4.5_0002512g0060 Nicotiana tabacum HOM05D002593 ORTHO05D006476 2.3e-07 59.3 73 50.7
Aqoxy6G00211 Aquilegia oxysepala HOM05D002593 ORTHO05D006476 3.0e-07 58.9 73 50.7
CARHR204290 Cardamine hirsuta HOM05D002593 ORTHO05D006476 3.0e-07 58.9 78 47.4
Aa31LG3G17840 Aethionema arabicum HOM05D002593 ORTHO05D006476 5.1e-07 58.2 73 50.7
EL10Ac4g09659 Beta vulgaris HOM05D002593 ORTHO05D006476 5.1e-07 58.2 73 47.9
PGSC0003DMG402014557 Solanum tuberosum HOM05D002593 ORTHO05D006476 5.1e-07 58.2 73 47.9
CAN.G610.52 Capsicum annuum HOM05D002593 ORTHO05D006476 8.8e-07 57.4 73 52.1
PSO528G0279 Papaver somniferum HOM05D002593 ORTHO05D006476 1.1e-06 57.0 75 50.7
Hund21782 Selenicereus undatus HOM05D002593 ORTHO05D006476 1.1e-06 57.0 73 49.3
Sopen05g004810 Solanum pennellii HOM05D002593 ORTHO05D006476 1.1e-06 57.0 74 54.1
FvH4_3g12600 Fragaria vesca HOM05D002593 ORTHO05D006476 2.0e-06 56.2 73 43.8
FAN16G0380 Fragaria x ananassa HOM05D002593 ORTHO05D006476 2.0e-06 56.2 73 43.8
FAN16G0459 Fragaria x ananassa HOM05D002593 ORTHO05D006476 2.0e-06 56.2 73 43.8
FAN25G3668 Fragaria x ananassa HOM05D002593 ORTHO05D006476 3.3e-06 55.5 73 43.8
Lsat_1_v5_gn_1_80920 Lactuca sativa HOM05D002593 ORTHO05D006476 3.3e-06 55.5 73 50.7
MD05G1249400 Malus domestica HOM05D002593 ORTHO05D006476 3.3e-06 55.5 73 47.9
PSO170G1422 Papaver somniferum HOM05D002593 ORTHO05D006476 3.3e-06 55.5 75 49.3
QL01p049838 Quercus lobata HOM05D002593 ORTHO05D006476 3.3e-06 55.5 66 53.0
SGA_v2.0_scaffold244G44338 Striga asiatica HOM05D002593 ORTHO05D006476 4.4e-06 55.1 73 47.9
Sc06g0005350 Simmondsia chinensis HOM05D002593 ORTHO05D006476 5.7e-06 54.7 68 48.5


User provided reference genes

Program Settings