Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 4.7e-249 864.0 417 100.0
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 4.3e-242 840.9 417 97.4
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 2.8e-241 838.2 417 96.9
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 3.2e-136 489.2 467 51.6
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 2.1e-124 449.9 451 50.3
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 3.1e-123 446.0 473 49.0
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 3.4e-122 442.6 464 49.6
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 8.4e-121 438.0 460 47.6
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 4.6e-119 432.2 462 46.5
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 5.1e-118 428.7 451 49.4
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 5.3e-115 418.7 432 51.4
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 4.3e-109 399.1 465 44.5
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 7.4e-109 398.3 460 44.8
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 2.1e-108 396.7 454 45.4
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 4.8e-108 395.6 465 44.1
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.4e-107 393.3 462 43.9
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 5.3e-107 392.1 464 43.5
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 5.3e-107 392.1 463 42.8
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 3.4e-106 389.4 469 45.2
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 4.5e-106 389.0 463 41.5
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 7.6e-106 388.3 469 41.8
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 9.9e-106 387.9 543 39.4
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 8.4e-105 384.8 463 42.5
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 9.3e-104 381.3 464 42.9
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 9.3e-104 381.3 464 42.5
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 6.7e-102 375.2 460 44.6
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 8.7e-102 374.8 426 43.9
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 6.2e-100 368.6 456 41.9
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 8.2e-100 368.2 463 41.0
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 1.8e-99 367.1 463 40.8
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 2.4e-99 366.7 461 40.3
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 6.9e-99 365.2 454 41.4
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.2e-98 364.4 467 41.5
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 4.5e-98 362.5 408 45.8
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 4.5e-98 362.5 460 40.7
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 7.6e-98 361.7 464 40.9
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 7.6e-98 361.7 439 43.3
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 3.8e-97 359.4 464 41.6
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 4.9e-97 359.0 460 40.2
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 6.5e-97 358.6 460 40.2
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 1.1e-96 357.8 463 40.8
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 1.9e-96 357.1 453 41.1
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 7.1e-96 355.1 456 40.6
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 2.1e-95 353.6 464 40.7
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 1.8e-94 350.5 513 39.0
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 1.9e-93 347.1 452 39.6
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 3.3e-93 346.3 438 42.5
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 5.7e-93 345.5 454 38.1
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 1.1e-91 341.3 454 39.2
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 1.2e-90 337.8 456 39.9
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 2.2e-89 333.6 448 39.5
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.9e-88 330.5 459 39.2
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.9e-88 330.5 459 39.2
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 3.2e-88 329.7 454 39.9
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 6.1e-87 325.5 461 37.5
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 5.7e-85 318.9 411 38.9
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 9.1e-83 311.6 442 40.0
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 1.5e-82 310.8 469 37.5
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 5.9e-82 308.9 471 38.0
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 1.3e-81 307.8 456 36.6
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 3.8e-81 306.2 313 50.2
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 3.8e-81 306.2 467 37.7
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 6.5e-81 305.4 442 39.4
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 2.5e-80 303.5 465 36.8
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 5.1e-78 295.8 449 35.6
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 2.6e-77 293.5 432 38.2
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 5.7e-77 292.4 432 38.4
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 7.4e-77 292.0 432 38.0
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.4e-75 287.0 482 34.4
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 3.1e-75 286.6 473 34.0
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.5e-74 284.3 470 35.5
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.5e-74 284.3 417 37.9
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 2.0e-74 283.9 382 40.1
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.0e-74 283.9 379 41.7
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 3.4e-74 283.1 451 33.9
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 5.9e-74 282.3 457 34.4
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 7.7e-74 282.0 457 34.6
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.0e-73 281.6 464 35.3
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 5.0e-73 279.3 458 33.8
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 1.1e-72 278.1 520 33.1
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 5.5e-72 275.8 457 34.1
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 1.1e-69 268.1 435 37.5
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 2.6e-69 266.9 386 37.0
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 3.3e-69 266.5 364 39.8
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 4.4e-69 266.2 456 35.5
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.3e-68 264.6 455 35.8
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 2.2e-68 263.8 455 33.6
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.2e-68 263.8 488 31.8
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 2.8e-68 263.5 460 35.0
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 3.7e-68 263.1 451 35.7
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 6.3e-68 262.3 492 31.9
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.1e-67 261.5 456 34.6
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.1e-67 261.5 456 34.6
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 1.4e-67 261.2 461 34.9
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 3.1e-67 260.0 456 34.6
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 1.2e-66 258.1 459 34.6
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 1.2e-66 258.1 429 34.5
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 3.5e-66 256.5 458 35.6
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 3.5e-66 256.5 387 36.2
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.0e-65 255.0 455 34.9
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 2.9e-65 253.4 456 35.5
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 2.9e-65 253.4 451 34.8
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 6.5e-65 252.3 430 34.2
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.6e-63 247.7 459 33.8
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 2.1e-63 247.3 475 33.3
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 4.7e-63 246.1 457 33.0
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.8e-62 244.2 477 33.5
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 4.0e-62 243.0 461 33.8
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 1.3e-60 238.0 467 32.3
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.3e-60 238.0 475 33.1
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.7e-60 237.7 478 32.0
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 2.2e-60 237.3 435 33.3
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 2.8e-60 236.9 477 32.5
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 4.5e-58 229.6 227 50.7
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 3.8e-57 226.5 389 32.1
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 5.0e-57 226.1 463 30.9
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.5e-56 223.8 263 44.1
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 4.2e-56 223.0 457 33.3
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 4.2e-56 223.0 383 34.7
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 4.0e-54 216.5 459 32.2
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 4.0e-54 216.5 459 32.2
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 5.2e-54 216.1 459 32.5
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 1.5e-53 214.5 459 31.4
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 2.6e-53 213.8 459 32.2
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 3.4e-53 213.4 444 30.6
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 7.5e-53 212.2 456 32.9
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 1.8e-51 207.6 455 31.0
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 2.7e-50 203.8 267 39.7
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 8.6e-49 198.7 266 38.3
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 1.2e-47 194.9 482 30.5
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 4.0e-46 189.9 472 29.9
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 5.2e-46 189.5 285 40.4
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 8.9e-46 188.7 382 32.5
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 2.6e-45 187.2 505 27.9
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 4.4e-45 186.4 336 34.5
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 4.4e-45 186.4 298 34.9
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 1.3e-44 184.9 471 29.5
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 2.2e-44 184.1 206 45.1
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 4.9e-44 183.0 293 41.3
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 4.1e-43 179.9 303 34.0
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 5.0e-41 172.9 206 40.8
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 3.3e-40 170.2 496 28.4
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 3.4e-37 160.2 267 37.5
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 9.8e-37 158.7 232 37.9
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 6.0e-34 149.4 287 32.8
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 2.3e-33 147.5 133 54.1
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 2.3e-30 137.5 130 52.3
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 8.3e-28 129.0 147 43.5
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 2.0e-21 107.8 232 34.1
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 2.0e-21 107.8 277 30.3
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 1.7e-20 104.8 269 27.9
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 9.2e-19 99.0 195 28.7
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 2.1e-18 97.8 159 37.7
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.1e-16 92.0 154 33.8
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 4.3e-16 90.1 118 35.6
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 9.5e-16 89.0 61 65.6
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 2.4e-14 84.3 88 45.5
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 3.4e-13 80.5 123 38.2
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 2.9e-12 77.4 115 40.9
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 4.6e-10 70.1 71 47.9
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 6.0e-10 69.7 81 37.0
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 3.9e-09 67.0 51 60.8
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 8.7e-09 65.9 78 35.9
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 1.6e-07 61.6 66 42.4


User provided reference genes

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