Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7I69Y5 Arachis hypogaea HOM05D000112 ORTHO05D011019 1.6e-28 128.6 63 100.0
COL.COLO4_37241 Corchorus olitorius HOM05D000112 ORTHO05D000564 2.5e-13 78.2 68 61.8
arahy.Tifrunner.gnm1.ann1.X40XE7 Arachis hypogaea HOM05D000112 ORTHO05D000564 3.3e-13 77.8 68 63.2
Thecc.03G139100 Theobroma cacao HOM05D000112 ORTHO05D000564 3.3e-13 77.8 68 61.8
arahy.Tifrunner.gnm1.ann1.EBLC22 Arachis hypogaea HOM05D000112 ORTHO05D000564 1.3e-12 75.9 68 61.8
Lalb_Chr11g0069241 Lupinus albus HOM05D000112 ORTHO05D000564 1.3e-12 75.9 67 62.7
Duzib084G1271 Durio zibethinus HOM05D000112 ORTHO05D000564 2.2e-12 75.1 67 61.2
Manes.06G126000 Manihot esculenta HOM05D000112 ORTHO05D000564 3.7e-12 74.3 67 59.7
Atru.chr6.1904 Acer truncatum HOM05D000112 ORTHO05D000564 1.1e-11 72.8 68 58.8
Cpa.g.c31756 Carica papaya HOM05D000112 ORTHO05D000564 1.1e-11 72.8 71 60.6
Lalb_Chr08g0237501 Lupinus albus HOM05D000112 ORTHO05D000564 1.4e-11 72.4 64 64.1
Cfa018717 Carpinus fangiana HOM05D000112 ORTHO05D000564 1.8e-11 72.0 65 63.1
Gohir.A07G047300 Gossypium hirsutum HOM05D000112 ORTHO05D000564 1.8e-11 72.0 67 58.2
Gohir.D07G051500 Gossypium hirsutum HOM05D000112 ORTHO05D000564 1.8e-11 72.0 67 58.2
Gorai.001G054600 Gossypium raimondii HOM05D000112 ORTHO05D000564 1.8e-11 72.0 67 58.2
arahy.Tifrunner.gnm1.ann1.9IQ583 Arachis hypogaea HOM05D000112 ORTHO05D000564 2.4e-11 71.6 68 61.8
Ah.02g114640 Amaranthus hybridus HOM05D000112 ORTHO05D000564 3.1e-11 71.2 67 56.7
Ciclev10030696m.g Citrus clementina HOM05D000112 ORTHO05D000564 3.1e-11 71.2 64 62.5
Dinv23214 Davidia involucrata HOM05D000112 ORTHO05D000564 3.1e-11 71.2 70 58.6
Glyma.08G008100 Glycine max HOM05D000112 ORTHO05D000564 3.1e-11 71.2 69 62.3
Gohir.A11G038500 Gossypium hirsutum HOM05D000112 ORTHO05D000564 3.1e-11 71.2 71 57.7
Gorai.007G044900 Gossypium raimondii HOM05D000112 ORTHO05D000564 3.1e-11 71.2 71 57.7
MD14G1148500 Malus domestica HOM05D000112 ORTHO05D000564 3.1e-11 71.2 64 62.5
Phvul.002G282200 Phaseolus vulgaris HOM05D000112 ORTHO05D000564 3.1e-11 71.2 69 62.3
VMungo0251G2726 Vigna mungo HOM05D000112 ORTHO05D000564 3.1e-11 71.2 69 62.3
arahy.Tifrunner.gnm1.ann1.TQL4XD Arachis hypogaea HOM05D000112 ORTHO05D000564 4.1e-11 70.9 69 62.3
CAN.G843.19 Capsicum annuum HOM05D000112 ORTHO05D000564 4.1e-11 70.9 71 59.2
Gorai.008G210200 Gossypium raimondii HOM05D000112 ORTHO05D000564 4.1e-11 70.9 68 58.8
Actinidia36839 Actinidia chinensis HOM05D000112 ORTHO05D000564 5.3e-11 70.5 67 58.2
Duzib205G2058 Durio zibethinus HOM05D000112 ORTHO05D000564 5.3e-11 70.5 67 59.7
SalBow7G3518 Salvia bowleyana HOM05D000112 ORTHO05D000564 5.3e-11 70.5 69 59.4
Duzib068G1404 Durio zibethinus HOM05D000112 ORTHO05D000564 6.9e-11 70.1 66 59.1
MD06G1132100 Malus domestica HOM05D000112 ORTHO05D000564 6.9e-11 70.1 64 60.9
Peaxi162Scf00314g00539 Petunia axillaris HOM05D000112 ORTHO05D000564 6.9e-11 70.1 71 57.7
Solyc03g118290.3 Solanum lycopersicum HOM05D000112 ORTHO05D000564 6.9e-11 70.1 71 57.7
Sopen03g037200 Solanum pennellii HOM05D000112 ORTHO05D000564 6.9e-11 70.1 71 57.7
Lj5C88G6 Lonicera japonica HOM05D000112 ORTHO05D000564 9.1e-11 69.7 71 57.7
Lj1g0018419 Lotus japonicus HOM05D000112 ORTHO05D000564 9.1e-11 69.7 64 60.9
Prupe.5G143100 Prunus persica HOM05D000112 ORTHO05D000564 9.1e-11 69.7 64 60.9
HPP92_011738 Vanilla planifolia HOM05D000112 ORTHO05D011019 9.1e-11 69.7 71 56.3
HanXRQChr05g0152981 Helianthus annuus HOM05D000112 ORTHO05D000564 1.2e-10 69.3 67 56.7
vmacro19170 Vaccinium macrocarpon HOM05D000112 ORTHO05D000564 1.2e-10 69.3 63 60.3
Cc00_g12260 Coffea canephora HOM05D000112 ORTHO05D000564 1.5e-10 68.9 68 58.8
Glyma.04G200600 Glycine max HOM05D000112 ORTHO05D000564 1.5e-10 68.9 64 60.9
Glyma.06G164900 Glycine max HOM05D000112 ORTHO05D000564 1.5e-10 68.9 64 60.9
Gohir.D12G195600 Gossypium hirsutum HOM05D000112 ORTHO05D000564 1.5e-10 68.9 68 57.4
Oeu017195.1 Olea europaea HOM05D000112 ORTHO05D000564 1.5e-10 68.9 71 57.7
Rhsim08G0196200 Rhododendron simsii HOM05D000112 ORTHO05D000564 1.5e-10 68.9 68 57.4
Sed0027970 Sechium edule HOM05D000112 ORTHO05D000564 1.5e-10 68.9 64 60.9
PGSC0003DMG400014179 Solanum tuberosum HOM05D000112 ORTHO05D000564 1.5e-10 68.9 71 57.7
AT5G62000 Arabidopsis thaliana HOM05D000112 ORTHO05D000564 2.0e-10 68.6 68 55.9
Ca_17586_v3 Cicer arietinum L. HOM05D000112 ORTHO05D000564 2.0e-10 68.6 68 60.3
Haze_07110 Corylus avellana HOM05D000112 ORTHO05D000564 2.0e-10 68.6 64 60.9
RcHm_v2.0_Chr7g0188911 Rosa chinensis HOM05D000112 ORTHO05D000564 2.0e-10 68.6 64 59.4
Solyc12g042070.3 Solanum lycopersicum HOM05D000112 ORTHO05D000564 2.0e-10 68.6 69 59.4
Sopen12g021160 Solanum pennellii HOM05D000112 ORTHO05D000564 2.0e-10 68.6 69 59.4
TWI23G1013 Tripterygium wilfordii HOM05D000112 ORTHO05D000564 2.0e-10 68.6 71 56.3
DCAR_016351 Daucus carota HOM05D000112 ORTHO05D000564 2.6e-10 68.2 68 55.9
Manes.14G045500 Manihot esculenta HOM05D000112 ORTHO05D000564 2.6e-10 68.2 68 54.4
TWI14G0723 Tripterygium wilfordii HOM05D000112 ORTHO05D000564 2.6e-10 68.2 67 58.2
vmacro16752 Vaccinium macrocarpon HOM05D000112 ORTHO05D001248 2.6e-10 68.2 67 58.2
GSVIVG01008639001 Vitis vinifera HOM05D000112 ORTHO05D000564 2.6e-10 68.2 71 57.7
Actinidia18310 Actinidia chinensis HOM05D000112 ORTHO05D000564 3.4e-10 67.8 70 57.1
Dinv13733 Davidia involucrata HOM05D000112 ORTHO05D000564 3.4e-10 67.8 65 58.5
Lj9C485G17 Lonicera japonica HOM05D000112 ORTHO05D000564 3.4e-10 67.8 69 58.0
Nitab4.5_0003119g0050 Nicotiana tabacum HOM05D000112 ORTHO05D000564 3.4e-10 67.8 71 57.7
Nitab4.5_0009686g0010 Nicotiana tabacum HOM05D000112 ORTHO05D000564 3.4e-10 67.8 71 57.7
FvH4_5g09310 Fragaria vesca HOM05D000112 ORTHO05D000564 4.5e-10 67.4 69 58.0
FAN13G1223 Fragaria x ananassa HOM05D000112 ORTHO05D000564 4.5e-10 67.4 69 58.0
FAN18G4279 Fragaria x ananassa HOM05D000112 ORTHO05D000564 4.5e-10 67.4 69 58.0
Sp2g25180 Schrenkiella parvula HOM05D000112 ORTHO05D000564 4.5e-10 67.4 68 55.9
CiPaw.12G001400 Carya illinoinensis HOM05D000112 ORTHO05D000564 5.9e-10 67.0 68 55.9
CDE06G2409 Ceratophyllum demersum HOM05D000112 ORTHO05D000564 5.9e-10 67.0 70 58.6
Lsat_1_v5_gn_1_32200 Lactuca sativa HOM05D000112 ORTHO05D000564 5.9e-10 67.0 69 55.1
Lj4g0018984 Lotus japonicus HOM05D000112 ORTHO05D000564 5.9e-10 67.0 68 58.8
Nitab4.5_0000663g0220 Nicotiana tabacum HOM05D000112 ORTHO05D000564 5.9e-10 67.0 71 56.3
Nitab4.5_0008892g0020 Nicotiana tabacum HOM05D000112 ORTHO05D000564 5.9e-10 67.0 71 56.3
Peaxi162Scf01168g00016 Petunia axillaris HOM05D000112 ORTHO05D000564 5.9e-10 67.0 68 55.9
Aqoxy5G03168 Aquilegia oxysepala HOM05D000112 ORTHO05D000564 7.7e-10 66.6 64 59.4
CsaV3_1G000090 Cucumis sativus L. HOM05D000112 ORTHO05D000564 7.7e-10 66.6 64 57.8
FAN08G1299 Fragaria x ananassa HOM05D000112 ORTHO05D000564 7.7e-10 66.6 65 58.5
CiPaw.11G001200 Carya illinoinensis HOM05D000112 ORTHO05D000564 1.0e-09 66.2 64 59.4
FAN04G2810 Fragaria x ananassa HOM05D000112 ORTHO05D000564 1.0e-09 66.2 64 59.4
Gohir.D11G041800 Gossypium hirsutum HOM05D000112 ORTHO05D000564 1.0e-09 66.2 71 54.9
ClCG06G018340 Citrullus lanatus HOM05D000112 ORTHO05D000564 1.3e-09 65.9 64 57.8
ECA246G1569 Erigeron canadensis HOM05D000112 ORTHO05D000564 1.3e-09 65.9 67 52.2
Nn3g16295 Nelumbo nucifera HOM05D000112 ORTHO05D000564 1.3e-09 65.9 59 59.3
Oeu005578.1 Olea europaea HOM05D000112 ORTHO05D000564 1.3e-09 65.9 70 55.7
PSO017G4814 Papaver somniferum HOM05D000112 ORTHO05D000564 1.3e-09 65.9 71 57.7
PSO478G3516 Papaver somniferum HOM05D000112 ORTHO05D000564 1.3e-09 65.9 71 57.7
CDE02G2022 Ceratophyllum demersum HOM05D000112 ORTHO05D000564 1.7e-09 65.5 68 52.9
CDE02G2098 Ceratophyllum demersum HOM05D000112 ORTHO05D000564 1.7e-09 65.5 70 57.1
Lsat_1_v5_gn_5_9980 Lactuca sativa HOM05D000112 ORTHO05D000564 1.7e-09 65.5 57 59.6
Nn4g22158 Nelumbo nucifera HOM05D000112 ORTHO05D000564 1.7e-09 65.5 63 60.3
TWI39G0866 Tripterygium wilfordii HOM05D000112 ORTHO05D000564 1.7e-09 65.5 68 54.4
ATR0582G007 Amborella trichopoda HOM05D000112 ORTHO05D000564 2.2e-09 65.1 69 58.0
MELO3C026161.2 Cucumis melo HOM05D000112 ORTHO05D000564 2.2e-09 65.1 64 56.2
ECA247G2487 Erigeron canadensis HOM05D000112 ORTHO05D000564 2.2e-09 65.1 67 55.2
Medtr8g100050 Medicago truncatula HOM05D000112 ORTHO05D000564 2.2e-09 65.1 69 58.0
Psat7g038760 Pisum sativum HOM05D000112 ORTHO05D000564 2.2e-09 65.1 69 58.0
Hund02501 Selenicereus undatus HOM05D000112 ORTHO05D000564 2.2e-09 65.1 64 57.8
PGSC0003DMG400014452 Solanum tuberosum HOM05D000112 ORTHO05D000564 2.2e-09 65.1 69 58.0
SGA_v2.0_scaffold143G35742 Striga asiatica HOM05D000112 ORTHO05D000564 2.2e-09 65.1 68 55.9
CARHR275800 Cardamine hirsuta HOM05D000112 ORTHO05D000564 2.9e-09 64.7 65 56.9
CDE09G1370 Ceratophyllum demersum HOM05D000112 ORTHO05D000564 2.9e-09 64.7 63 55.6
Migut.I00613 Erythranthe guttata HOM05D000112 ORTHO05D000564 2.9e-09 64.7 69 55.1
QL03p049685 Quercus lobata HOM05D000112 ORTHO05D000564 2.9e-09 64.7 71 54.9
TAR622G0979 Trochodendron aralioides HOM05D000112 ORTHO05D000564 2.9e-09 64.7 74 54.1
MSTRG.22852 Avicennia marina HOM05D000112 ORTHO05D000564 3.8e-09 64.3 71 53.5
BcaC03g18114 Brassica carinata HOM05D000112 ORTHO05D000564 3.8e-09 64.3 65 58.5
A06p28710 Brassica napus HOM05D000112 ORTHO05D000564 3.8e-09 64.3 65 56.9
BraA06t25811Z Brassica rapa HOM05D000112 ORTHO05D000564 3.8e-09 64.3 65 56.9
Sabra12G0078400 Salix brachista HOM05D000112 ORTHO05D000564 3.8e-09 64.3 58 58.6
TAR371G0700 Trochodendron aralioides HOM05D000112 ORTHO05D000564 3.8e-09 64.3 64 57.8
BcaC04g23432 Brassica carinata HOM05D000112 ORTHO05D000564 5.0e-09 63.9 65 56.9
A09p07480 Brassica napus HOM05D000112 ORTHO05D000564 5.0e-09 63.9 65 56.9
C09p08400 Brassica napus HOM05D000112 ORTHO05D000564 5.0e-09 63.9 65 56.9
BolC9t53750H Brassica oleracea HOM05D000112 ORTHO05D000564 5.0e-09 63.9 65 56.9
BraA09t36402Z Brassica rapa HOM05D000112 ORTHO05D000564 5.0e-09 63.9 65 56.9
TAR629G2310 Trochodendron aralioides HOM05D000112 ORTHO05D000564 5.0e-09 63.9 62 58.1
AL8G38770 Arabidopsis lyrata HOM05D000112 ORTHO05D000564 6.5e-09 63.5 65 55.4
MSTRG.11230 Avicennia marina HOM05D000112 ORTHO05D000564 6.5e-09 63.5 71 53.5
BcaB02g09613 Brassica carinata HOM05D000112 ORTHO05D000564 6.5e-09 63.5 65 56.9
C02p61820 Brassica napus HOM05D000112 ORTHO05D000564 6.5e-09 63.5 65 56.9
C03p65050 Brassica napus HOM05D000112 ORTHO05D000564 6.5e-09 63.5 65 56.9
BolC3t18763H Brassica oleracea HOM05D000112 ORTHO05D000564 6.5e-09 63.5 65 56.9
BraA02t09124Z Brassica rapa HOM05D000112 ORTHO05D000564 6.5e-09 63.5 65 56.9
Carub.0008s2269 Capsella rubella HOM05D000112 ORTHO05D000564 6.5e-09 63.5 65 55.4
Thhalv10003641m.g Eutrema salsugineum HOM05D000112 ORTHO05D000564 6.5e-09 63.5 65 55.4
MBI07_g07330_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D000564 6.5e-09 63.5 70 54.3
QL10p000789 Quercus lobata HOM05D000112 ORTHO05D000564 6.5e-09 63.5 63 55.6
BcaB07g29805 Brassica carinata HOM05D000112 ORTHO05D000564 8.5e-09 63.2 65 55.4
Aa31LG11G1520 Aethionema arabicum HOM05D000112 ORTHO05D000564 1.1e-08 62.8 65 55.4
BcaB02g09612 Brassica carinata HOM05D000112 ORTHO05D000564 1.1e-08 62.8 65 55.4
PSO017G3230 Papaver somniferum HOM05D000112 ORTHO05D000564 1.1e-08 62.8 71 54.9
PSO478G4419 Papaver somniferum HOM05D000112 ORTHO05D000564 1.1e-08 62.8 71 54.9
Potri.015G105300 Populus trichocarpa HOM05D000112 ORTHO05D000564 1.1e-08 62.8 64 54.7
THA.LOC104819425 Tarenaya hassleriana HOM05D000112 ORTHO05D000564 1.4e-08 62.4 64 56.2
CSS0023669 Camellia sinensis var. sinensis HOM05D000112 ORTHO05D000564 1.9e-08 62.0 65 55.4
CAN.G521.4 Capsicum annuum HOM05D000112 ORTHO05D000564 1.9e-08 62.0 69 55.1
Lalb_Chr13g0297001 Lupinus albus HOM05D000112 ORTHO05D000564 1.9e-08 62.0 65 56.9
MBI11_g11865_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D000564 1.9e-08 62.0 70 54.3
Oeu013657.2 Olea europaea HOM05D000112 ORTHO05D000564 1.9e-08 62.0 70 55.7
CSS0015480 Camellia sinensis var. sinensis HOM05D000112 ORTHO05D000564 2.5e-08 61.6 42 69.0
DCAR_025655 Daucus carota HOM05D000112 ORTHO05D000564 2.5e-08 61.6 69 50.7
Lalb_Chr07g0183771 Lupinus albus HOM05D000112 ORTHO05D000564 2.5e-08 61.6 68 54.4
Potri.012G106100 Populus trichocarpa HOM05D000112 ORTHO05D000564 2.5e-08 61.6 62 54.8
Hund10047 Selenicereus undatus HOM05D000112 ORTHO05D000564 2.5e-08 61.6 69 52.2
Sc04g0000240 Simmondsia chinensis HOM05D000112 ORTHO05D000564 2.5e-08 61.6 68 51.5
Sabra15G0125500 Salix brachista HOM05D000112 ORTHO05D000564 3.2e-08 61.2 63 54.0
SalBow1G4443 Salvia bowleyana HOM05D000112 ORTHO05D000564 4.2e-08 60.8 69 52.2
HPP92_007048 Vanilla planifolia HOM05D000112 ORTHO05D000564 4.2e-08 60.8 71 52.1
Duzib248G0898 Durio zibethinus HOM05D000112 ORTHO05D000564 5.5e-08 60.5 73 53.4
BcaNung01414 Brassica carinata HOM05D000112 ORTHO05D000564 7.2e-08 60.1 65 52.3
Haze_12491 Corylus avellana HOM05D000112 ORTHO05D000564 7.2e-08 60.1 71 52.1
Lalb_Chr12g0202461 Lupinus albus HOM05D000112 ORTHO05D000564 7.2e-08 60.1 71 53.5
Phvul.009G161900 Phaseolus vulgaris HOM05D000112 ORTHO05D000564 7.2e-08 60.1 42 71.4
VMungo1309G1006 Vigna mungo HOM05D000112 ORTHO05D000564 7.2e-08 60.1 42 71.4
EL10Ac5g11300 Beta vulgaris HOM05D000112 ORTHO05D000564 9.4e-08 59.7 62 54.8
BolC2t12237H Brassica oleracea HOM05D000112 ORTHO05D000564 9.4e-08 59.7 66 57.6
Eucgr.B03551 Eucalyptus grandis HOM05D000112 ORTHO05D000564 9.4e-08 59.7 66 51.5
Potri.001G066200 Populus trichocarpa HOM05D000112 ORTHO05D000564 1.2e-07 59.3 71 47.9
Cc03_g13440 Coffea canephora HOM05D000112 ORTHO05D011019 1.6e-07 58.9 37 75.7
CANSAT56G2993 Cannabis sativa HOM05D000112 ORTHO05D000564 2.7e-07 58.2 65 50.8
PGR102G1760 Punica granatum HOM05D000112 ORTHO05D000564 2.7e-07 58.2 63 52.4
Thecc.02G194100 Theobroma cacao HOM05D000112 ORTHO05D000564 2.7e-07 58.2 68 50.0
TWI18G1465 Tripterygium wilfordii HOM05D000112 ORTHO05D000564 2.7e-07 58.2 65 52.3
HanXRQChr02g0034291 Helianthus annuus HOM05D000112 ORTHO05D000564 3.6e-07 57.8 71 52.1
GSVIVG01004942001 Vitis vinifera HOM05D000112 ORTHO05D000564 3.6e-07 57.8 68 52.9
HanXRQChr04g0100261 Helianthus annuus HOM05D000112 ORTHO05D000564 4.6e-07 57.4 71 50.7
SEGI_09939 Sequoiadendron giganteum HOM05D000112 ORTHO05D000564 4.6e-07 57.4 42 69.0
THA.LOC104801816 Tarenaya hassleriana HOM05D000112 ORTHO05D000564 4.6e-07 57.4 64 54.7
Glyma.05G200800 Glycine max HOM05D000112 ORTHO05D000564 6.1e-07 57.0 56 60.7
Ah.11g046800 Amaranthus hybridus HOM05D000112 ORTHO05D000564 7.9e-07 56.6 42 69.0
Manes.08G102200 Manihot esculenta HOM05D000112 ORTHO05D000564 7.9e-07 56.6 64 50.0
HanXRQChr17g0548581 Helianthus annuus HOM05D000112 ORTHO05D000564 1.0e-06 56.2 66 47.0
Manes.04G041700 Manihot esculenta HOM05D000112 ORTHO05D000564 1.0e-06 56.2 65 49.2
Sabra01G0046100 Salix brachista HOM05D000112 ORTHO05D000564 1.0e-06 56.2 68 44.1
Sabra03G0119000 Salix brachista HOM05D000112 ORTHO05D000564 1.0e-06 56.2 71 46.5
SHI14177 Sapria himalayana HOM05D000112 ORTHO05D000564 1.4e-06 55.8 42 64.3
Potri.003G163600 Populus trichocarpa HOM05D000112 ORTHO05D000564 1.8e-06 55.5 71 45.1
Cfa009440 Carpinus fangiana HOM05D000112 ORTHO05D000564 2.3e-06 55.1 42 61.9
CiPaw.06G108700 Carya illinoinensis HOM05D000112 ORTHO05D000564 2.3e-06 55.1 63 50.8
TPR.G12902 Trifolium pratense HOM05D000112 ORTHO05D000564 3.9e-06 54.3 42 66.7
SEGI_08387 Sequoiadendron giganteum HOM05D000112 ORTHO05D000564 6.7e-06 53.5 42 54.8
SEGI_21707 Sequoiadendron giganteum HOM05D000112 ORTHO05D000564 6.7e-06 53.5 42 54.8
MSTRG.4640 Avicennia marina HOM05D000112 ORTHO05D000564 8.8e-06 53.1 63 47.6


User provided reference genes

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