Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 6.1e-180 634.0 319 100.0
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.5e-149 533.1 278 97.1
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 5.1e-78 295.4 320 55.6
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 2.8e-76 289.7 320 54.7
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 6.3e-76 288.5 317 56.8
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 4.4e-69 265.8 325 51.4
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 1.3e-57 227.6 317 46.7
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.0e-54 218.0 269 50.2
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 4.4e-53 212.6 304 49.7
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 7.5e-53 211.8 323 44.3
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.7e-49 200.7 300 45.7
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 4.2e-48 196.1 301 43.2
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 6.1e-47 192.2 307 44.0
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 2.0e-45 187.2 317 41.3
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 7.5e-45 185.3 300 44.0
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 2.4e-43 180.3 294 44.6
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 5.0e-41 172.6 294 39.8
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 2.8e-39 166.8 293 41.6
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 3.6e-39 166.4 271 41.0
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 6.8e-38 162.2 278 41.0
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 3.4e-37 159.8 297 43.4
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 2.4e-35 153.7 279 40.5
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 7.0e-35 152.1 267 42.7
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 2.3e-30 137.1 396 32.1
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 2.9e-28 130.2 315 34.6
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 3.2e-27 126.7 86 75.6
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 1.6e-26 124.4 331 34.1
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 2.0e-26 124.0 272 38.6
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 2.7e-26 123.6 303 33.0
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 5.0e-25 119.4 246 40.2
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 1.6e-23 114.4 306 34.0
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 2.1e-23 114.0 308 32.5
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 4.7e-23 112.8 317 32.2
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 8.1e-23 112.1 333 31.8
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 1.4e-22 111.3 316 30.1
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 1.4e-22 111.3 112 52.7
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.8e-22 110.9 322 32.6
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 4.0e-22 109.8 325 31.7
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 5.2e-22 109.4 265 37.0
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 6.8e-22 109.0 202 37.1
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 8.9e-22 108.6 296 31.1
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 8.9e-22 108.6 281 33.1
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.6e-21 107.1 111 50.5
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 2.6e-21 107.1 347 30.3
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 7.5e-21 105.5 280 32.5
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 1.4e-19 101.3 298 29.9
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 5.4e-19 99.4 334 30.2
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 7.1e-19 99.0 312 29.2
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 9.2e-19 98.6 346 27.7
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 4.6e-18 96.3 332 30.4
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 6.0e-18 95.9 312 29.5
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 6.0e-18 95.9 177 36.7
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 7.8e-18 95.5 95 50.5
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.3e-17 94.7 308 31.8
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 2.3e-17 94.0 263 31.6
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 2.3e-17 94.0 102 48.0
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.3e-17 94.0 317 28.4
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 3.9e-17 93.2 310 31.6
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 3.9e-17 93.2 112 47.3
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 3.9e-17 93.2 286 32.5
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 6.6e-17 92.4 114 48.2
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.9e-16 90.9 114 47.4
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 5.6e-16 89.4 165 39.4
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 5.6e-16 89.4 311 29.6
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 7.3e-16 89.0 129 40.3
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 9.5e-16 88.6 299 30.1
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 2.8e-15 87.0 289 30.4
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 8.1e-15 85.5 201 32.3
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 8.1e-15 85.5 201 32.3
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 3.1e-14 83.6 102 45.1
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 3.1e-14 83.6 109 42.2
Glyma.20G205301 Glycine max HOM05D005259 ORTHO05D006402 2.0e-13 80.9 159 39.0
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 7.6e-13 79.0 189 33.3
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 2.2e-12 77.4 88 47.7
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 2.2e-12 77.4 263 28.9
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 3.7e-12 76.6 170 33.5
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.9e-12 76.3 88 48.9
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.4e-12 75.9 84 48.8
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 8.4e-12 75.5 87 47.1
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 4.1e-11 73.2 103 42.7
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 7.1e-11 72.4 269 28.6
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 9.2e-11 72.0 262 29.0
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 1.2e-10 71.6 269 28.6
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 2.7e-10 70.5 335 26.9
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 3.5e-10 70.1 175 33.7
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 4.6e-10 69.7 101 39.6
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 6.0e-10 69.3 164 32.9
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 7.8e-10 68.9 101 39.6
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 1.3e-09 68.2 185 31.4
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.7e-09 67.8 73 54.8
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.5e-08 64.7 285 30.2
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 1.2e-07 61.6 91 41.8
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 3.6e-07 60.1 265 28.3
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.1e-06 58.5 63 47.6
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 1.1e-06 58.5 64 48.4
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 3.1e-06 57.0 385 22.3
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 6.8e-06 55.8 85 40.0


User provided reference genes

Program Settings