Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6WW78Y Arachis hypogaea HOM05D002376 ORTHO05D008821 1.2e-109 399.8 199 100.0
arahy.Tifrunner.gnm1.ann1.F02FPT Arachis hypogaea HOM05D002376 ORTHO05D008821 1.4e-73 280.0 199 77.4
LjContig00141g0012114 Lotus japonicus HOM05D002376 ORTHO05D008821 3.8e-47 192.2 172 59.3
Phvul.008G249600 Phaseolus vulgaris HOM05D002376 ORTHO05D008821 7.2e-46 188.0 172 58.1
Glyma.02G234100 Glycine max HOM05D002376 ORTHO05D008821 1.2e-45 187.2 172 57.0
Medtr5g074880 Medicago truncatula HOM05D002376 ORTHO05D008821 6.7e-44 181.4 173 57.2
Lalb_Chr17g0345531 Lupinus albus HOM05D002376 ORTHO05D008821 8.8e-44 181.0 196 52.6
Lalb_Chr10g0103701 Lupinus albus HOM05D002376 ORTHO05D008821 2.0e-43 179.9 191 53.9
TPR.G17753 Trifolium pratense HOM05D002376 ORTHO05D008821 2.6e-43 179.5 171 57.9
Cfa010938 Carpinus fangiana HOM05D002376 ORTHO05D008821 1.8e-41 173.3 189 53.4
Haze_24442 Corylus avellana HOM05D002376 ORTHO05D008821 3.5e-40 169.1 189 51.3
Manes.18G140300 Manihot esculenta HOM05D002376 ORTHO05D008821 7.7e-40 167.9 191 50.8
COL.COLO4_11184 Corchorus olitorius HOM05D002376 ORTHO05D008821 2.2e-39 166.4 192 51.0
Rhsim13G0061900 Rhododendron simsii HOM05D002376 ORTHO05D008821 2.9e-39 166.0 194 51.5
CiPaw.13G066200 Carya illinoinensis HOM05D002376 ORTHO05D008821 1.1e-38 164.1 190 50.5
Dinv28710 Davidia involucrata HOM05D002376 ORTHO05D008821 4.2e-38 162.2 164 53.7
RcHm_v2.0_Chr5g0072361 Rosa chinensis HOM05D002376 ORTHO05D008821 4.2e-38 162.2 191 49.2
MD11G1061300 Malus domestica HOM05D002376 ORTHO05D008821 7.2e-38 161.4 191 49.2
QL03p067094 Quercus lobata HOM05D002376 ORTHO05D008821 9.4e-38 161.0 191 49.7
vmacro02895 Vaccinium macrocarpon HOM05D002376 ORTHO05D008821 9.4e-38 161.0 195 51.3
CSS0028475 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.2e-37 160.6 192 49.0
Psat2g052040 Pisum sativum HOM05D002376 ORTHO05D008821 1.2e-37 160.6 202 48.0
GSVIVG01024598001 Vitis vinifera HOM05D002376 ORTHO05D008821 1.6e-37 160.2 188 48.4
Gorai.003G151600 Gossypium raimondii HOM05D002376 ORTHO05D008821 2.7e-37 159.5 195 50.3
Thecc.09G361000 Theobroma cacao HOM05D002376 ORTHO05D008821 2.7e-37 159.5 193 50.8
CANSAT54G2364 Cannabis sativa HOM05D002376 ORTHO05D008821 8.0e-37 157.9 199 49.7
Gohir.D03G144300 Gossypium hirsutum HOM05D002376 ORTHO05D008821 1.0e-36 157.5 195 49.7
Prupe.6G044100 Prunus persica HOM05D002376 ORTHO05D008821 2.3e-36 156.4 191 47.6
CsaV3_6G019000 Cucumis sativus L. HOM05D002376 ORTHO05D008821 3.0e-36 156.0 199 47.7
Gohir.A03G024200 Gossypium hirsutum HOM05D002376 ORTHO05D008821 4.0e-36 155.6 195 49.7
THA.LOC104800780 Tarenaya hassleriana HOM05D002376 ORTHO05D008821 5.2e-36 155.2 186 48.9
ClCG02G019170 Citrullus lanatus HOM05D002376 ORTHO05D008821 6.8e-36 154.8 199 47.2
Ciclev10017044m.g Citrus clementina HOM05D002376 ORTHO05D008821 1.2e-35 154.1 195 46.7
FvH4_3g40170 Fragaria vesca HOM05D002376 ORTHO05D008821 1.2e-35 154.1 192 46.4
TWI75G1859 Tripterygium wilfordii HOM05D002376 ORTHO05D008821 1.2e-35 154.1 168 51.8
MELO3C025682.2 Cucumis melo HOM05D002376 ORTHO05D008821 1.5e-35 153.7 197 48.2
Duzib168G1911 Durio zibethinus HOM05D002376 ORTHO05D008821 2.0e-35 153.3 189 48.7
Sed0011436 Sechium edule HOM05D002376 ORTHO05D008821 2.0e-35 153.3 199 47.2
Lsat_1_v5_gn_5_175460 Lactuca sativa HOM05D002376 ORTHO05D008821 2.6e-35 152.9 187 48.1
CSS0003249 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 3.4e-35 152.5 164 50.6
HanXRQChr01g0012551 Helianthus annuus HOM05D002376 ORTHO05D008821 4.4e-35 152.1 196 49.5
Cc01_g09100 Coffea canephora HOM05D002376 ORTHO05D008821 7.5e-35 151.4 166 50.0
Nitab4.5_0000755g0130 Nicotiana tabacum HOM05D002376 ORTHO05D008821 7.5e-35 151.4 166 51.8
Ah.15g096510 Amaranthus hybridus HOM05D002376 ORTHO05D008821 1.7e-34 150.2 165 50.9
Eucgr.B04014 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.7e-34 150.2 194 45.4
Eucgr.B04017 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.7e-34 150.2 194 45.4
AUR62009722 Chenopodium quinoa HOM05D002376 ORTHO05D008821 2.2e-34 149.8 164 51.2
Lj1A123G47 Lonicera japonica HOM05D002376 ORTHO05D008821 2.2e-34 149.8 171 51.5
PGR102G2282 Punica granatum HOM05D002376 ORTHO05D008821 2.2e-34 149.8 192 47.9
Sopen11g027160 Solanum pennellii HOM05D002376 ORTHO05D008821 2.2e-34 149.8 169 49.7
Atru.chr6.2418 Acer truncatum HOM05D002376 ORTHO05D008821 2.8e-34 149.4 166 50.0
Peaxi162Scf00003g00413 Petunia axillaris HOM05D002376 ORTHO05D008821 2.8e-34 149.4 175 49.1
Solyc11g068450.2 Solanum lycopersicum HOM05D002376 ORTHO05D008821 2.8e-34 149.4 169 49.7
TAR287G0002 Trochodendron aralioides HOM05D002376 ORTHO05D008821 2.8e-34 149.4 181 48.6
Migut.H01101 Erythranthe guttata HOM05D002376 ORTHO05D008821 3.7e-34 149.1 176 48.9
Oeu064671.1 Olea europaea HOM05D000883 ORTHO05D002942 4.8e-34 148.7 169 50.3
PGSC0003DMG400026358 Solanum tuberosum HOM05D002376 ORTHO05D008821 4.8e-34 148.7 169 49.1
Nitab4.5_0009324g0020 Nicotiana tabacum HOM05D002376 ORTHO05D008821 1.1e-33 147.5 166 50.6
DCAR_014464 Daucus carota HOM05D002376 ORTHO05D008821 2.4e-33 146.4 165 47.9
BcaB01g04113 Brassica carinata HOM05D002376 ORTHO05D008821 3.1e-33 146.0 164 50.6
TAR623G0666 Trochodendron aralioides HOM05D002376 ORTHO05D008821 3.1e-33 146.0 168 50.0
Carub.0004s1148 Capsella rubella HOM05D002376 ORTHO05D008821 4.1e-33 145.6 178 47.2
AUR62036225 Chenopodium quinoa HOM05D002376 ORTHO05D008821 4.1e-33 145.6 171 48.0
BcaC01g05988 Brassica carinata HOM05D002376 ORTHO05D008821 7.0e-33 144.8 176 46.6
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 7.0e-33 144.8 164 50.0
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 7.0e-33 144.8 176 46.6
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 7.0e-33 144.8 176 46.6
Potri.013G156700 Populus trichocarpa HOM05D002376 ORTHO05D008821 9.1e-33 144.4 174 47.1
Sabra13G0126300 Salix brachista HOM05D002376 ORTHO05D008821 1.2e-32 144.1 188 46.3
Sp4g12890 Schrenkiella parvula HOM05D002376 ORTHO05D008821 1.6e-32 143.7 164 49.4
Aa31LG5G6370 Aethionema arabicum HOM05D002376 ORTHO05D008821 2.0e-32 143.3 184 47.8
AT2G30330 Arabidopsis thaliana HOM05D002376 ORTHO05D008821 2.0e-32 143.3 164 50.0
CARHR123650 Cardamine hirsuta HOM05D002376 ORTHO05D008821 2.0e-32 143.3 164 49.4
Actinidia23182 Actinidia chinensis HOM05D002376 ORTHO05D008821 2.7e-32 142.9 155 52.3
EL10Ac7g15863 Beta vulgaris HOM05D002376 ORTHO05D008821 2.7e-32 142.9 186 46.2
AL4G25190 Arabidopsis lyrata HOM05D002376 ORTHO05D008821 7.7e-32 141.4 164 49.4
Ca_05691_v3 Cicer arietinum L. HOM05D002376 ORTHO05D008821 1.0e-31 141.0 99 70.7
CDE06G1730 Ceratophyllum demersum HOM05D002376 ORTHO05D008821 2.2e-31 139.8 164 47.6
Eucgr.L02725 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.9e-31 139.4 148 50.7
MBI15_g06972_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 3.8e-31 139.0 177 45.8
Aqoxy4G02143 Aquilegia oxysepala HOM05D002376 ORTHO05D008821 5.0e-31 138.7 165 46.1
Thhalv10017367m.g Eutrema salsugineum HOM05D002376 ORTHO05D008821 5.0e-31 138.7 194 43.8
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 8.5e-31 137.9 101 67.3
Eucgr.B02271 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.5e-30 137.1 148 50.0
SalBow2G2295 Salvia bowleyana HOM05D002376 ORTHO05D008821 1.9e-30 136.7 163 46.6
Dinv12257 Davidia involucrata HOM05D002376 ORTHO05D008821 3.2e-30 136.0 124 59.7
COL.COLO4_11185 Corchorus olitorius HOM05D002376 ORTHO05D008821 9.5e-30 134.4 122 61.5
PSO170G0682 Papaver somniferum HOM05D002376 ORTHO05D008821 9.5e-30 134.4 166 45.8
SalBow2G0685 Salvia bowleyana HOM05D002376 ORTHO05D008821 1.2e-29 134.0 163 46.6
Os11g0112300 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 1.6e-29 133.7 165 44.8
Prupe.6G095400 Prunus persica HOM05D002376 ORTHO05D008821 1.6e-29 133.7 190 43.7
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 1.6e-29 133.7 191 44.0
HPP92_009016 Vanilla planifolia HOM05D002376 ORTHO05D008821 1.0e-28 131.0 163 44.2
ATR0586G003 Amborella trichopoda HOM05D002376 ORTHO05D008821 5.2e-28 128.6 166 42.2
CAN.G1358.8 Capsicum annuum HOM05D002376 ORTHO05D008821 8.8e-28 127.9 147 49.0
Cpa.g.sc2.331 Carica papaya HOM05D002376 ORTHO05D008821 1.2e-27 127.5 99 63.6
Actinidia32596 Actinidia chinensis HOM05D002376 ORTHO05D008821 2.8e-26 122.9 145 46.9
CSS0017661 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 8.3e-26 121.3 94 64.9
FAN21G3738 Fragaria x ananassa HOM05D002376 ORTHO05D008821 3.1e-25 119.4 120 53.3
Sc06g0008070 Simmondsia chinensis HOM05D002376 ORTHO05D008821 5.4e-25 118.6 118 58.5
Nn4g26021 Nelumbo nucifera HOM05D002376 ORTHO05D008821 1.6e-24 117.1 111 58.6
FAN11G0211 Fragaria x ananassa HOM05D002376 ORTHO05D008821 2.0e-24 116.7 121 52.1
Hund18966 Selenicereus undatus HOM05D002376 ORTHO05D008821 3.5e-24 115.9 98 62.2
SGA_v2.0_scaffold77G25373 Striga asiatica HOM05D002376 ORTHO05D008821 4.5e-24 115.5 103 59.2
FAN16G0225 Fragaria x ananassa HOM05D002376 ORTHO05D008821 5.9e-24 115.2 121 51.2
Pp3c20_8500 Physcomitrium patens HOM05D002376 ORTHO05D008821 2.5e-22 109.8 160 39.4
Mapoly0069s0031 Marchantia polymorpha HOM05D002376 ORTHO05D008821 4.3e-22 109.0 163 37.4
MD03G1059100 Malus domestica HOM05D002376 ORTHO05D008821 9.5e-22 107.8 197 39.6
PSO017G2121 Papaver somniferum HOM05D002376 ORTHO05D008821 1.0e-20 104.4 98 55.1
AagrBONN_evm.TU.Sc2ySwM_228.448 Anthoceros agrestis HOM05D002376 ORTHO05D008821 3.0e-20 102.8 161 36.0
Os12g0416500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 2.4e-17 93.2 88 54.5
SHI19244 Sapria himalayana HOM05D002376 ORTHO05D008821 1.6e-16 90.5 99 54.5
SMO361G0428 Selaginella moellendorffii HOM05D002376 ORTHO05D008821 1.6e-16 90.5 139 36.0
MBI07_g35969_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 1.7e-15 87.0 72 62.5
Zm00001eb276260 Zea mays HOM05D002376 ORTHO05D008821 5.0e-15 85.5 72 56.9
Os12g0111900 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 2.5e-14 83.2 95 46.3
MBI15_g36803_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 4.0e-12 75.9 141 38.3
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 5.2e-12 75.5 149 29.5
ECA248G3831 Erigeron canadensis HOM05D002376 ORTHO05D008821 3.7e-10 69.3 73 54.8
MD03G1104100 Malus domestica HOM05D002376 ORTHO05D008821 4.6e-08 62.4 153 31.4
MCO04G004 Micromonas commoda HOM05D002376 ORTHO05D008821 4.3e-06 55.8 159 23.9


User provided reference genes

Program Settings