Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6V23H5 Arachis hypogaea HOM05D000806 ORTHO05D002320 7.4e-33 143.3 72 100.0
arahy.Tifrunner.gnm1.ann1.15M9SP Arachis hypogaea HOM05D000806 ORTHO05D002320 2.2e-13 78.6 39 94.9
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 2.2e-13 78.6 39 94.9
LjContig00318g0000728 Lotus japonicus HOM05D000806 ORTHO05D002320 3.6e-11 71.2 50 68.0
HanXRQChr00c0702g0576831 Helianthus annuus HOM05D000806 ORTHO05D002320 4.6e-11 70.9 36 88.9
HanXRQChr01g0020371 Helianthus annuus HOM05D000806 ORTHO05D002320 4.6e-11 70.9 36 88.9
HanXRQChr10g0283541 Helianthus annuus HOM05D000806 ORTHO05D002320 4.6e-11 70.9 36 88.9
HanXRQChr10g0284231 Helianthus annuus HOM05D000806 ORTHO05D002320 4.6e-11 70.9 36 88.9
HanXRQChr10g0289251 Helianthus annuus HOM05D000806 ORTHO05D002320 4.6e-11 70.9 36 88.9
HanXRQChr10g0318221 Helianthus annuus HOM05D000806 ORTHO05D002320 4.6e-11 70.9 36 88.9
HanXRQChr11g0326811 Helianthus annuus HOM05D000806 ORTHO05D002320 4.6e-11 70.9 36 88.9
HanXRQCPg0580021 Helianthus annuus HOM05D000806 ORTHO05D002320 4.6e-11 70.9 36 88.9
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 6.1e-11 70.5 50 68.0
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 6.1e-11 70.5 50 68.0
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 6.1e-11 70.5 50 68.0
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 6.1e-11 70.5 50 68.0
PSO548G0072 Papaver somniferum HOM05D000806 ORTHO05D002320 7.9e-11 70.1 36 86.1
arahy.Tifrunner.gnm1.ann1.J4M97S Arachis hypogaea HOM05D000806 ORTHO05D002320 1.0e-10 69.7 39 84.6
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 1.0e-10 69.7 50 68.0
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 1.0e-10 69.7 50 68.0
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.0e-10 69.7 36 86.1
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.0e-10 69.7 36 86.1
Gohir.A07G163654 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.0e-10 69.7 36 86.1
PGR111G0026 Punica granatum HOM05D000806 ORTHO05D002320 1.0e-10 69.7 50 68.0
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 1.4e-10 69.3 37 86.5
AUR62041919 Chenopodium quinoa HOM05D000806 ORTHO05D002324 1.4e-10 69.3 37 86.5
C02p43520 Brassica napus HOM05D000806 ORTHO05D002320 1.8e-10 68.9 50 66.0
C09p40220 Brassica napus HOM05D000806 ORTHO05D002320 1.8e-10 68.9 50 66.0
BraA06t25423Z Brassica rapa HOM05D000806 ORTHO05D002320 1.8e-10 68.9 50 66.0
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 1.8e-10 68.9 50 66.0
BraSC59t46593Z Brassica rapa HOM05D000806 ORTHO05D002320 1.8e-10 68.9 50 66.0
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 1.8e-10 68.9 33 90.9
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 1.8e-10 68.9 33 90.9
Hma1.2p1_0242F.1_g100626 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 1.8e-10 68.9 36 86.1
Hma1.2p1_0355F.1_g133923 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 1.8e-10 68.9 36 86.1
Hma1.2p1_0355F.1_g133926 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 1.8e-10 68.9 36 86.1
Nitab4.5_0003644g0070 Nicotiana tabacum HOM05D000806 ORTHO05D002320 1.8e-10 68.9 36 86.1
Peaxi162Scf01064g00230 Petunia axillaris HOM05D000806 ORTHO05D002320 1.8e-10 68.9 36 86.1
Solyc00g500065.1 Solanum lycopersicum HOM05D000806 ORTHO05D002320 1.8e-10 68.9 36 86.1
Sopen07g002120 Solanum pennellii HOM05D000806 ORTHO05D002320 1.8e-10 68.9 36 86.1
ATCG00500 Arabidopsis thaliana HOM05D000806 ORTHO05D002320 2.3e-10 68.6 50 66.0
CAN.G1007.1 Capsicum annuum HOM05D000806 ORTHO05D002320 2.3e-10 68.6 36 83.3
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 2.3e-10 68.6 36 83.3
CAN.G445.6 Capsicum annuum HOM05D000806 ORTHO05D002320 2.3e-10 68.6 36 83.3
AUR62006476 Chenopodium quinoa HOM05D000806 ORTHO05D002320 3.0e-10 68.2 50 68.0
AUR62032522 Chenopodium quinoa HOM05D000806 ORTHO05D002320 3.0e-10 68.2 50 68.0
AUR62042261 Chenopodium quinoa HOM05D000806 ORTHO05D002324 3.0e-10 68.2 50 68.0
AUR62023874 Chenopodium quinoa HOM05D000806 ORTHO05D002324 3.9e-10 67.8 37 83.8
Thhalv10011034m.g Eutrema salsugineum HOM05D000806 ORTHO05D002320 3.9e-10 67.8 50 66.0
Lalb_Chr10g0102281 Lupinus albus HOM05D000806 ORTHO05D002320 3.9e-10 67.8 36 86.1
Lalb_Chr23g0274531 Lupinus albus HOM05D000806 ORTHO05D002320 3.9e-10 67.8 36 86.1
Peaxi162Scf00021g00818 Petunia axillaris HOM05D000806 ORTHO05D002320 3.9e-10 67.8 36 83.3
AL2G20668 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 5.1e-10 67.4 36 83.3
BNapus_Darmor_BZH_scaffold_287p00130 Brassica napus HOM05D000806 ORTHO05D002320 6.7e-10 67.0 50 66.0
CAN.G1693.6 Capsicum annuum HOM05D000806 ORTHO05D002320 6.7e-10 67.0 36 80.6
C09p29580 Brassica napus HOM05D000806 ORTHO05D002320 8.8e-10 66.6 49 65.3
AUR62028418 Chenopodium quinoa HOM05D000806 ORTHO05D002324 8.8e-10 66.6 37 83.8
Eucgr.I02537 Eucalyptus grandis HOM05D000806 ORTHO05D002320 8.8e-10 66.6 36 83.3
Peaxi162Scf00937g00111 Petunia axillaris HOM05D000806 ORTHO05D002320 8.8e-10 66.6 36 83.3
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 8.8e-10 66.6 50 64.0
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 8.8e-10 66.6 50 64.0
AL2G21530 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 1.1e-09 66.2 50 64.0
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.5e-09 65.9 36 83.3
Gorai.003G066100 Gossypium raimondii HOM05D000806 ORTHO05D002320 1.5e-09 65.9 34 85.3
MD02G1049400 Malus domestica HOM05D000806 ORTHO05D002320 1.5e-09 65.9 50 64.0
Sed0009930 Sechium edule HOM05D000806 ORTHO05D002320 1.5e-09 65.9 50 66.0
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 1.5e-09 65.9 50 66.0
BcaC04g21638 Brassica carinata HOM05D000806 ORTHO05D002320 2.0e-09 65.5 49 65.3
DCAR_032493 Daucus carota HOM05D000806 ORTHO05D002320 2.0e-09 65.5 36 83.3
Gohir.A09G101966 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.0e-09 65.5 34 85.3
Lj1g0000993 Lotus japonicus HOM05D000806 ORTHO05D002320 2.0e-09 65.5 45 68.9
BolSC35t60644H Brassica oleracea HOM05D000806 ORTHO05D002320 2.5e-09 65.1 50 64.0
BolSC35t60752H Brassica oleracea HOM05D000806 ORTHO05D002320 2.5e-09 65.1 50 64.0
BolSC47t61099H Brassica oleracea HOM05D000806 ORTHO05D002320 2.5e-09 65.1 50 64.0
CAN.G219.28 Capsicum annuum HOM05D001133 ORTHO05D000941 2.5e-09 65.1 36 80.6
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 2.5e-09 65.1 36 83.3
Gohir.D13G043800 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.5e-09 65.1 36 80.6
Nitab4.5_0009663g0040 Nicotiana tabacum HOM05D000806 ORTHO05D002320 2.5e-09 65.1 36 83.3
Potri.013G162600 Populus trichocarpa HOM05D000806 ORTHO05D002320 2.5e-09 65.1 50 62.0
TPR.G16839 Trifolium pratense HOM05D000806 ORTHO05D002320 2.5e-09 65.1 36 80.6
BraSC25t45846Z Brassica rapa HOM05D000806 ORTHO05D002320 5.7e-09 63.9 33 84.8
Oeu012807.1 Olea europaea HOM05D000806 ORTHO05D002320 7.4e-09 63.5 36 77.8
Solyc04g039830.3 Solanum lycopersicum HOM05D000806 ORTHO05D002320 7.4e-09 63.5 36 80.6
BolSC29t60465H Brassica oleracea HOM05D000806 ORTHO05D002320 9.7e-09 63.2 36 80.6
BolSC49t61185H Brassica oleracea HOM05D000806 ORTHO05D002320 9.7e-09 63.2 36 80.6
BolSC29t60587H Brassica oleracea HOM05D000806 ORTHO05D002320 1.3e-08 62.8 50 62.0
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 1.3e-08 62.8 36 77.8
Sc23g0003920 Simmondsia chinensis HOM05D000806 ORTHO05D002320 1.3e-08 62.8 36 77.8
RcHm_v2.0_Chr5g0042991 Rosa chinensis HOM05D000806 ORTHO05D002320 1.7e-08 62.4 50 60.0
RcHm_v2.0_CPg0502101 Rosa chinensis HOM05D000806 ORTHO05D002320 1.7e-08 62.4 50 60.0
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 2.2e-08 62.0 35 80.0
Nn010s41432 Nelumbo nucifera HOM05D000806 ORTHO05D002320 2.8e-08 61.6 50 64.0
Nn010s41447 Nelumbo nucifera HOM05D000806 ORTHO05D002320 2.8e-08 61.6 50 64.0
Nn265s45953 Nelumbo nucifera HOM05D000806 ORTHO05D002320 2.8e-08 61.6 50 64.0
CAN.G1012.3 Capsicum annuum HOM05D000806 ORTHO05D002320 3.7e-08 61.2 34 79.4
CARHR116850 Cardamine hirsuta HOM05D000806 ORTHO05D002320 3.7e-08 61.2 47 63.8
Lsat_1_v5_gn_7_98301 Lactuca sativa HOM05D000806 ORTHO05D002320 3.7e-08 61.2 36 75.0
CDE02G1301 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 4.8e-08 60.8 33 84.8
Migut.L00565 Erythranthe guttata HOM05D000806 ORTHO05D002320 4.8e-08 60.8 33 78.8
Phvul.002G278116 Phaseolus vulgaris HOM05D000806 ORTHO05D002320 6.3e-08 60.5 36 72.2
Nitab4.5_0000342g0250 Nicotiana tabacum HOM05D000806 ORTHO05D002320 8.2e-08 60.1 30 86.7
BraSC25t45868Z Brassica rapa HOM05D000806 ORTHO05D002320 1.4e-07 59.3 34 82.4
Medtr3g080300 Medicago truncatula HOM05D000806 ORTHO05D002320 1.4e-07 59.3 33 78.8
Solyc01g017200.2 Solanum lycopersicum HOM05D000806 ORTHO05D002320 1.4e-07 59.3 36 75.0
Sopen04g010000 Solanum pennellii HOM05D000806 ORTHO05D002320 1.8e-07 58.9 42 71.4
VMungo0251G1963 Vigna mungo HOM05D000806 ORTHO05D010715 2.4e-07 58.5 31 83.9
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 3.1e-07 58.2 34 76.5
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 4.1e-07 57.8 50 62.0
CAN.G1183.3 Capsicum annuum HOM05D000806 ORTHO05D002320 5.3e-07 57.4 50 56.0
Lj1P303T21 Lonicera japonica HOM05D000806 ORTHO05D002320 5.3e-07 57.4 37 64.9
CAN.G88.2 Capsicum annuum HOM05D000806 ORTHO05D002320 6.9e-07 57.0 35 74.3
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 6.9e-07 57.0 36 72.2
Psat0s2288g0120 Pisum sativum HOM05D000806 ORTHO05D002320 1.5e-06 55.8 36 72.2
Psat0s2288g0160 Pisum sativum HOM05D000806 ORTHO05D002320 1.5e-06 55.8 36 72.2
Psat0s2754g0160 Pisum sativum HOM05D000806 ORTHO05D002320 1.5e-06 55.8 36 72.2
Psat0s415g0040 Pisum sativum HOM05D000806 ORTHO05D002320 1.5e-06 55.8 36 72.2
Psat0s6989g0080 Pisum sativum HOM05D000806 ORTHO05D002320 1.5e-06 55.8 36 72.2
BcaB01g03056 Brassica carinata HOM05D000806 ORTHO05D002320 2.0e-06 55.5 36 69.4
Lj2A1237T126 Lonicera japonica HOM05D000806 ORTHO05D002320 2.0e-06 55.5 36 63.9
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 2.0e-06 55.5 36 63.9
vmacro18617 Vaccinium macrocarpon HOM05D000806 ORTHO05D002320 2.6e-06 55.1 38 65.8
Psat5g134840 Pisum sativum HOM05D000806 ORTHO05D002320 4.5e-06 54.3 36 69.4
vmacro18167 Vaccinium macrocarpon HOM05D000806 ORTHO05D002320 4.5e-06 54.3 39 64.1
BolSC46t61037H Brassica oleracea HOM05D000806 ORTHO05D002320 5.9e-06 53.9 27 88.9
Psat2g111000 Pisum sativum HOM05D000806 ORTHO05D002320 5.9e-06 53.9 36 69.4
Psat5g286240 Pisum sativum HOM05D000806 ORTHO05D002320 5.9e-06 53.9 43 67.4
Hund07992 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund08575 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund08809 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund19838 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund22772 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund27485 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund27490 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund27599 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund27874 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund27977 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund28101 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund28450 Selenicereus undatus HOM05D000680 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund28473 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund28511 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund28624 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund28670 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund28748 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund29142 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund29174 Selenicereus undatus HOM05D000680 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund29363 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund29462 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund29492 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund29619 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund29637 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund29868 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund30328 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund30362 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund30468 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund30508 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0
Hund30560 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.7e-06 53.5 31 71.0


User provided reference genes

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