Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 0.0e+00 2353.6 1262 100.0
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 0.0e+00 2288.5 1274 96.9
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 0.0e+00 1580.5 1313 68.1
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1562.7 1344 67.1
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1560.4 1343 66.4
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 0.0e+00 1546.6 1346 65.7
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 0.0e+00 1518.4 1346 64.3
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 0.0e+00 1497.6 1310 63.4
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 0.0e+00 1477.6 1247 65.6
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 0.0e+00 1411.0 1345 60.8
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 0.0e+00 1333.2 1236 61.4
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 0.0e+00 1240.7 1345 56.7
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 0.0e+00 1187.9 1344 56.2
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 0.0e+00 1129.0 1321 52.6
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 0.0e+00 1126.3 1239 54.2
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1119.0 1379 52.3
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 0.0e+00 1110.1 1260 51.8
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 0.0e+00 1095.5 1320 50.4
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 2.6e-311 1072.4 1315 51.0
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 5.4e-304 1048.1 1270 52.0
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 2.2e-297 1026.2 1344 49.3
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 3.1e-296 1022.3 1386 47.0
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 1.6e-292 1010.0 1344 50.2
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 1.5e-290 1003.4 1387 45.0
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 3.0e-286 989.2 889 60.5
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 1.9e-285 986.5 1420 45.7
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 3.1e-283 979.2 1375 44.6
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 2.0e-282 976.5 1285 47.9
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 2.6e-274 949.5 1384 45.2
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 5.8e-274 948.3 1382 45.2
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 1.4e-272 943.7 1237 46.2
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 1.4e-267 927.2 1340 46.3
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 2.6e-266 922.9 1331 45.8
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 5.2e-259 898.7 1337 46.1
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.5e-258 897.1 1383 44.2
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 2.6e-258 896.3 1299 45.4
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 3.5e-255 885.9 1341 45.3
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 3.0e-254 882.9 1308 43.9
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 3.6e-252 875.9 1345 43.4
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 5.8e-250 868.6 1356 42.6
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 2.2e-249 866.7 1314 42.5
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 3.9e-246 855.9 1301 44.4
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 2.5e-245 853.2 668 70.4
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 4.5e-242 842.4 1272 43.3
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 7.6e-242 841.6 1333 42.0
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 3.8e-241 839.3 1374 42.2
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 3.9e-238 829.3 1383 43.2
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 3.4e-234 816.2 1302 43.2
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 5.8e-234 815.5 1314 44.1
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 3.2e-232 809.7 1249 42.2
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 4.6e-231 805.8 1233 45.0
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 1.8e-230 803.9 1284 46.3
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 5.1e-230 802.4 1210 44.0
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.9e-229 800.4 1307 43.0
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 2.8e-228 796.6 1300 43.0
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 8.5e-225 785.0 1230 42.2
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.7e-223 780.0 1224 43.3
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 6.5e-217 758.8 1271 40.7
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 1.0e-209 734.9 1392 37.5
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 5.0e-209 732.6 1260 42.4
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 1.8e-198 697.6 1313 40.3
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 1.3e-193 681.4 1089 41.0
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 4.4e-189 666.4 891 45.2
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 1.2e-186 658.3 1281 38.7
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 2.3e-182 644.0 1414 36.8
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 8.6e-177 625.5 1229 37.1
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 8.9e-174 615.5 727 48.8
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 3.4e-173 613.6 1295 35.5
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 4.9e-172 609.8 1212 38.4
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 7.0e-171 605.9 1224 38.6
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 2.7e-170 604.0 1293 35.2
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 6.0e-170 602.8 1296 36.7
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 7.8e-170 602.4 1217 38.2
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 3.9e-169 600.1 1286 36.2
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 3.9e-169 600.1 1293 36.7
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 4.7e-167 593.2 1295 36.1
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 3.4e-165 587.0 1295 35.8
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 4.9e-164 583.2 1289 36.9
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 1.4e-163 581.6 1296 34.6
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 2.0e-162 577.8 1313 35.7
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 1.9e-160 571.2 1295 38.7
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 3.1e-158 563.9 1358 33.7
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 1.6e-151 541.6 1275 34.7
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 6.2e-151 539.7 1236 33.5
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 6.6e-137 493.0 1207 33.0
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 7.6e-133 479.6 761 41.0
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.1e-131 475.7 1295 33.2
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 5.1e-121 440.3 749 38.7
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 1.5e-117 428.7 499 52.5
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 4.9e-116 423.7 1445 28.8
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 9.7e-112 409.5 935 36.8
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 2.0e-109 401.7 690 41.2
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 2.8e-103 381.3 687 39.9
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 6.3e-95 353.6 1152 27.9
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.1e-90 338.6 515 43.1
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 8.0e-90 336.7 908 31.8
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 5.7e-72 277.3 1502 26.9
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 2.9e-68 265.0 1657 25.2
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 3.8e-68 264.6 444 40.5
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.9e-67 262.3 748 30.9
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 4.9e-63 247.7 245 51.4
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 1.8e-62 245.7 185 65.9
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 5.4e-62 244.2 347 41.8
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 3.3e-59 235.0 164 68.3
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 1.2e-56 226.5 175 65.1
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 9.5e-51 206.8 1029 28.7
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 8.3e-47 193.7 329 41.9
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.6e-45 189.5 1230 26.8
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 8.6e-44 183.7 247 45.7
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 1.5e-43 183.0 172 55.2
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 9.9e-40 170.2 159 55.3
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 3.7e-39 168.3 105 75.2
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 5.4e-38 164.5 161 54.7
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 3.4e-32 145.2 106 67.9
Psat0ss2518g0240 Pisum sativum HOM05D001879 ORTHO05D007648 3.5e-29 135.2 107 61.7
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 4.6e-29 134.8 150 44.7
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.3e-20 106.7 61 80.3
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 4.3e-19 101.7 105 46.7
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 1.6e-18 99.8 85 52.9
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 3.4e-16 92.0 140 40.7
arahy.Tifrunner.gnm1.ann1.4H8PLX Arachis hypogaea HOM05D001879 ORTHO05D021484 2.9e-15 89.0 130 43.8
arahy.Tifrunner.gnm1.ann1.NPA3T0 Arachis hypogaea HOM05D004261 ORTHO05D021484 2.9e-15 89.0 54 81.5
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 1.6e-13 83.2 127 41.7
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.6e-13 83.2 54 66.7
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 3.5e-13 82.0 165 29.1
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 1.3e-12 80.1 148 36.5
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 5.1e-12 78.2 77 46.8
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 1.1e-11 77.0 77 45.5
arahy.Tifrunner.gnm1.ann1.CWP81L Arachis hypogaea HOM05D001879 ORTHO05D021484 3.3e-11 75.5 44 81.8
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 2.8e-10 72.4 209 29.2
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 8.1e-10 70.9 110 60.9
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 1.8e-09 69.7 74 44.6
Psat7g011440 Pisum sativum HOM05D000252 ORTHO05D015734 1.5e-08 66.6 46 67.4
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 5.8e-08 64.7 51 54.9
arahy.Tifrunner.gnm1.ann1.ZRK7H3 Arachis hypogaea HOM05D004261 ORTHO05D005642 7.6e-08 64.3 35 85.7
AUR62002349 Chenopodium quinoa HOM05D002300 ORTHO05D002340 2.2e-07 62.8 118 30.5
arahy.Tifrunner.gnm1.ann1.EM8Y4L Arachis hypogaea HOM05D004261 ORTHO05D021484 6.4e-07 61.2 35 82.9
Pp3c7_3950 Physcomitrium patens HOM05D002300 ORTHO05D002340 1.9e-06 59.7 109 30.3
AUR62023840 Chenopodium quinoa HOM05D002300 ORTHO05D002340 2.5e-06 59.3 118 29.7
EL10Ac3g06011 Beta vulgaris HOM05D002300 ORTHO05D002340 7.1e-06 57.8 113 27.4
Peaxi162Scf00180g00216 Petunia axillaris HOM05D002300 ORTHO05D002340 7.1e-06 57.8 73 35.6
A09p51810 Brassica napus HOM05D002300 ORTHO05D002340 9.3e-06 57.4 113 31.9
BraA09t40616Z Brassica rapa HOM05D002300 ORTHO05D002340 9.3e-06 57.4 113 31.9


User provided reference genes

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