Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 3752.6 1929 100.0
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 3631.3 1932 97.1
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 2882.8 1963 76.0
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 2872.4 1974 75.6
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 2788.8 1961 73.7
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 2784.2 1970 74.4
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 2777.3 1961 73.6
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 2769.2 1973 73.4
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 2761.1 2050 70.7
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 2691.8 2047 69.6
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 2514.6 1961 68.2
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 2294.2 1976 61.3
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 2288.8 1975 61.5
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2221.0 2053 58.6
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2156.3 1967 58.2
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2150.9 1982 58.4
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2137.5 1982 57.1
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 2129.0 1982 58.3
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 2128.6 1984 57.4
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 2123.6 1968 57.1
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2105.9 1975 57.5
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 2093.9 1980 56.4
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 2079.7 1976 56.1
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 2077.4 1983 55.4
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2068.1 1966 56.1
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 2064.7 2002 56.0
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 2056.6 1984 56.1
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 2052.3 1978 55.8
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 2048.1 1975 56.3
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2035.4 1974 55.7
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 2028.1 1973 55.8
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2023.4 1975 55.6
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 2006.5 2002 54.1
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1972.6 2076 52.5
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1951.0 2184 50.5
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1928.7 1783 57.3
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1926.0 1981 53.0
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1924.1 1998 53.6
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1881.3 1966 51.9
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1857.4 2035 50.0
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1837.4 1971 50.4
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1830.8 1972 51.0
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1818.9 1972 50.7
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1815.4 1976 51.1
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1815.4 1986 50.4
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1814.3 1986 50.2
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1811.2 1972 50.3
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1810.8 1972 49.7
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1810.0 1964 49.9
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1805.0 1970 49.9
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1804.6 1972 49.9
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1793.1 1968 49.5
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1792.3 1978 49.5
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1766.9 1975 49.4
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1760.3 1998 48.9
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1759.6 1975 49.0
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1758.4 1975 48.7
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1757.3 1978 48.6
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1756.5 1978 48.8
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1744.9 2092 47.0
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1731.8 1987 49.4
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1729.1 1973 49.0
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1717.6 1976 47.9
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1713.4 2176 45.5
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1709.9 1960 49.2
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1706.8 2022 47.7
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1687.5 2018 47.2
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1682.2 1950 48.2
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1659.0 1966 48.5
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1635.9 1831 49.0
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1626.3 1975 46.4
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1605.9 1967 45.9
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1590.5 1949 47.4
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1588.2 1736 50.8
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1523.5 1991 44.5
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1396.3 1963 42.9
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1395.9 1352 55.5
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1361.7 1353 56.5
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1328.9 1496 51.1
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1285.0 1366 52.6
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1282.3 1260 56.0
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1198.0 2321 35.9
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 0.0e+00 1118.6 1972 37.6
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 2.5e-297 1026.5 1233 47.0
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 2.4e-279 966.8 2064 32.0
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 6.1e-275 952.2 2074 31.7
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 2.9e-269 933.3 1221 45.0
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 8.0e-251 872.1 1090 45.8
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 5.2e-250 869.4 2079 29.6
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 8.9e-242 842.0 1012 47.8
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 7.5e-241 839.0 775 55.9
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 9.3e-223 778.9 650 62.2
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 2.0e-217 761.1 583 63.5
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 3.6e-211 740.3 682 57.8
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 7.9e-198 696.0 745 51.4
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 1.3e-189 668.7 735 49.1
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 3.0e-189 667.5 1338 35.1
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.9e-188 664.8 1428 31.6
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 1.5e-172 612.1 413 76.0
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 2.6e-172 611.3 475 64.4
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.3e-171 609.0 836 41.7
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 3.4e-156 557.8 790 45.7
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 3.1e-154 551.2 731 44.2
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 1.4e-149 535.8 335 77.3
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.3e-147 529.3 514 55.8
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 2.8e-142 511.5 711 40.6
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 3.9e-136 491.1 764 40.1
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 1.9e-135 488.8 2180 23.3
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 3.9e-120 438.0 499 47.3
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 4.4e-116 424.5 602 43.0
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 4.9e-115 421.0 391 57.8
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.9e-111 409.1 738 37.0
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 9.9e-100 370.2 661 36.9
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 4.6e-81 308.1 624 34.3
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 8.2e-70 270.8 202 64.4
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 8.5e-67 260.8 215 59.1
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 5.3e-61 241.5 475 32.4
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 6.3e-54 218.0 179 62.6
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 6.3e-54 218.0 207 56.0
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 5.9e-52 211.5 226 54.0
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.9e-43 182.6 134 65.7
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 4.2e-42 178.7 587 28.4
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 4.7e-41 175.3 343 34.7
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 2.8e-38 166.0 133 61.7
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.8e-38 166.0 345 32.8
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 6.3e-38 164.9 90 88.9
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 1.8e-37 163.3 143 54.5
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 2.3e-35 156.4 110 72.7
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 3.8e-35 155.6 100 73.0
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 6.6e-35 154.8 126 60.3
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 3.5e-28 132.5 519 26.4
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 6.6e-27 128.3 94 66.0
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.1e-26 127.5 118 53.4
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 3.3e-26 125.9 99 62.6
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.4e-24 120.6 149 47.0
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 7.5e-23 114.8 112 54.5
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 1.4e-21 110.5 71 73.2
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 1.9e-21 110.2 124 43.5
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.9e-18 100.1 325 25.5
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 5.6e-18 98.6 138 42.0
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 2.1e-17 96.7 86 50.0
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 6.2e-17 95.1 68 70.6
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 8.0e-17 94.7 122 40.2
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 3.1e-16 92.8 87 57.5
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 4.4e-15 89.0 112 49.1
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 1.3e-14 87.4 125 38.4
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 1.7e-14 87.0 156 35.3
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 2.2e-14 86.7 130 36.2
Glyma.19G036450 Glycine max HOM05D004110 ORTHO05D004810 2.9e-14 86.3 68 64.7
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.9e-14 86.3 187 32.6
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 1.1e-13 84.3 57 70.2
arahy.Tifrunner.gnm1.ann1.9L03M9 Arachis hypogaea HOM05D004110 ORTHO05D004810 1.4e-13 84.0 43 90.7
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 1.4e-13 84.0 158 36.1
TPR.G30321 Trifolium pratense HOM05D004110 ORTHO05D004810 9.2e-13 81.3 74 62.2
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 2.7e-12 79.7 68 70.6
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 6.0e-12 78.6 59 55.9
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 1.0e-11 77.8 69 55.1
Psat0s5229g0080 Pisum sativum HOM05D006670 ORTHO05D006513 1.5e-10 73.9 54 70.4
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 2.5e-10 73.2 84 40.5
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 2.8e-09 69.7 60 70.0
Psat6g113120 Pisum sativum HOM05D020801 ORTHO05D004810 4.7e-09 68.9 53 60.4
Psat5g035760 Pisum sativum HOM05D001673 ORTHO05D020227 3.1e-08 66.2 50 74.0
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 4.0e-08 65.9 103 44.7
Psat5g096880 Pisum sativum HOM05D020801 ORTHO05D004810 1.7e-06 60.5 44 61.4
Psat5g096920 Pisum sativum HOM05D020801 ORTHO05D004810 1.7e-06 60.5 44 61.4
Psat7g001600 Pisum sativum HOM05D020801 ORTHO05D004810 1.7e-06 60.5 44 61.4
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 2.9e-06 59.7 59 54.2


User provided reference genes

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