Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 0.0e+00 3060.8 1790 100.0
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 0.0e+00 2834.3 1789 93.5
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 0.0e+00 1239.9 695 97.0
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 5.4e-217 759.6 1258 45.9
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 4.1e-209 733.4 1314 43.8
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 1.2e-200 705.3 1840 36.6
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 2.1e-200 704.5 1282 43.5
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 4.7e-197 693.3 1283 44.0
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 9.9e-195 685.6 1248 43.6
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 2.7e-192 677.6 1257 43.3
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 6.2e-189 666.4 1279 41.4
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 9.0e-188 662.5 1262 43.2
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 7.6e-179 632.9 1286 41.5
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.2e-168 599.0 1800 34.8
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 1.8e-159 568.5 1829 34.2
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 5.3e-148 530.4 800 48.2
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 3.8e-138 497.7 798 48.1
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 1.6e-136 492.3 922 44.0
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 1.5e-134 485.7 844 45.9
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 4.8e-133 480.7 843 45.4
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 1.2e-131 476.1 804 47.3
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 2.7e-131 474.9 816 47.2
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 4.5e-131 474.2 808 45.9
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 3.7e-125 454.5 812 46.1
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 6.3e-125 453.8 797 45.2
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 1.4e-124 452.6 788 45.3
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 1.8e-124 452.2 794 46.9
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.8e-124 452.2 816 46.2
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.5e-123 448.0 784 44.8
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 5.9e-123 447.2 786 44.5
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 5.9e-123 447.2 801 44.8
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 7.7e-123 446.8 805 45.6
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 7.7e-123 446.8 797 46.3
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.3e-122 445.3 786 44.5
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 2.9e-122 444.9 803 44.3
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 6.6e-122 443.7 798 44.9
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 8.6e-122 443.4 782 44.4
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 1.1e-121 443.0 836 39.8
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 5.5e-121 440.7 865 43.0
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 3.0e-119 434.9 810 44.7
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 6.8e-119 433.7 895 41.7
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 4.4e-118 431.0 782 45.0
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 2.8e-117 428.3 1965 29.7
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 2.4e-116 425.2 774 46.5
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.6e-115 422.5 782 43.7
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.5e-113 416.0 790 44.3
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 7.3e-113 413.7 788 43.4
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 3.6e-112 411.4 746 45.2
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.3e-109 402.9 807 42.8
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 3.2e-108 398.3 829 43.4
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 3.5e-107 394.8 828 41.2
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 3.0e-106 391.7 819 41.4
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 6.6e-106 390.6 820 42.6
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 5.6e-105 387.5 778 42.9
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 8.0e-104 383.6 779 41.3
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 3.4e-102 378.3 779 41.2
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 1.3e-101 376.3 801 40.9
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 4.9e-101 374.4 809 42.2
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 3.2e-100 371.7 931 37.1
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 4.6e-99 367.9 914 39.5
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 1.1e-97 363.2 462 56.9
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 6.2e-96 357.5 813 39.6
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 1.4e-95 356.3 809 40.2
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 2.6e-94 352.1 1181 33.0
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 1.9e-92 345.9 834 36.7
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 1.9e-92 345.9 848 40.0
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 5.4e-92 344.4 834 36.7
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 3.5e-91 341.7 744 41.4
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 4.6e-91 341.3 824 38.7
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 6.0e-91 340.9 752 41.8
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 3.9e-90 338.2 847 38.4
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 5.1e-90 337.8 686 38.2
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.2e-88 333.2 964 32.0
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 3.1e-87 328.6 782 37.6
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 1.5e-86 326.2 905 35.1
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 2.0e-86 325.9 853 36.0
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 9.9e-86 323.6 752 39.0
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 1.3e-85 323.2 757 40.7
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 1.7e-85 322.8 776 40.5
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 1.7e-85 322.8 1128 32.3
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 8.4e-85 320.5 809 36.6
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 4.2e-84 318.2 762 38.3
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 5.4e-84 317.8 765 40.3
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 1.2e-83 316.6 822 38.9
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 3.5e-83 315.1 762 38.2
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 1.5e-81 309.7 804 36.9
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 1.5e-81 309.7 804 36.9
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 6.2e-80 304.3 767 37.7
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 8.1e-80 303.9 737 40.4
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 1.8e-79 302.8 774 38.8
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 2.6e-78 298.9 775 33.9
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 5.8e-78 297.7 927 36.2
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 7.6e-78 297.4 1068 32.8
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 8.4e-77 293.9 787 36.7
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 1.1e-76 293.5 614 37.6
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 5.4e-76 291.2 854 35.2
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 7.8e-75 287.3 596 36.7
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 1.0e-74 287.0 1027 31.3
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 1.3e-74 286.6 750 37.9
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 1.6e-72 279.6 620 36.3
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 8.1e-72 277.3 779 37.5
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.5e-70 273.1 481 47.2
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 3.8e-69 268.5 596 36.7
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 4.2e-68 265.0 632 34.7
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 6.0e-67 261.2 544 42.5
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 3.9e-66 258.5 772 35.4
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 1.3e-64 253.4 977 33.0
arahy.Tifrunner.gnm1.ann1.GS68H9 Arachis hypogaea HOM05D000237 ORTHO05D087653 2.0e-54 219.5 118 92.4
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 5.8e-54 218.0 555 35.0
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 1.6e-51 209.9 274 56.2
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 1.8e-50 206.5 518 40.7
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 8.7e-50 204.1 329 50.2
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 2.8e-48 199.1 585 31.8
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 3.7e-48 198.7 499 33.9
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 3.4e-46 192.2 212 66.5
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 5.9e-46 191.4 254 44.1
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 1.1e-41 177.2 557 37.0
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 2.7e-35 156.0 99 69.7
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 2.6e-33 149.4 81 88.9
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 4.4e-33 148.7 81 87.7
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 6.3e-32 144.8 489 31.3
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 3.2e-28 132.5 619 27.9
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 1.2e-27 130.6 151 47.0
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.8e-26 126.7 443 31.2
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 1.8e-26 126.7 210 54.8
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 2.9e-21 109.4 266 36.8
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 8.5e-21 107.8 334 31.4
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.4e-18 100.5 130 42.3
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 3.0e-18 99.4 147 39.5
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 4.7e-11 75.5 189 31.7
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 3.0e-10 72.8 303 29.0
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 4.9e-08 65.5 108 39.8
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 4.1e-07 62.4 70 57.1
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 7.0e-07 61.6 126 34.1
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.7e-06 59.7 52 50.0
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 7.7e-06 58.2 149 34.2


User provided reference genes

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