Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6CNS1E Arachis hypogaea HOM05D004050 ORTHO05D005162 4.3e-40 167.5 85 100.0
VMungo0540G1292 Vigna mungo HOM05D004050 ORTHO05D005162 1.4e-14 82.8 95 55.8
Glyma.17G102000 Glycine max HOM05D004050 ORTHO05D005162 3.1e-14 81.6 95 54.7
Lj1g0013952 Lotus japonicus HOM05D004050 ORTHO05D005162 4.1e-14 81.3 95 55.8
Manes.01G249700 Manihot esculenta HOM05D004050 ORTHO05D005162 4.1e-14 81.3 95 51.6
Lalb_Chr05g0217801 Lupinus albus HOM05D004050 ORTHO05D005162 5.3e-14 80.9 95 54.7
Phvul.006G109900 Phaseolus vulgaris HOM05D004050 ORTHO05D005162 6.9e-14 80.5 95 54.7
Glyma.19G252800 Glycine max HOM05D004050 ORTHO05D005162 1.2e-13 79.7 95 54.7
QL11p030149 Quercus lobata HOM05D004050 ORTHO05D005162 1.5e-13 79.3 94 52.1
TPR.G18216 Trifolium pratense HOM05D004050 ORTHO05D005162 1.5e-13 79.3 93 54.8
TPR.G4745 Trifolium pratense HOM05D004050 ORTHO05D005162 1.5e-13 79.3 93 54.8
arahy.Tifrunner.gnm1.ann1.T01U3X Arachis hypogaea HOM05D004050 ORTHO05D005162 2.0e-13 79.0 95 54.7
Ca_09490_v3 Cicer arietinum L. HOM05D004050 ORTHO05D005162 2.0e-13 79.0 93 53.8
Haze_19347 Corylus avellana HOM05D004050 ORTHO05D005162 2.6e-13 78.6 95 52.6
arahy.Tifrunner.gnm1.ann1.4GFI35 Arachis hypogaea HOM05D004050 ORTHO05D005162 3.4e-13 78.2 95 54.7
arahy.Tifrunner.gnm1.ann1.90L2UZ Arachis hypogaea HOM05D004050 ORTHO05D005162 3.4e-13 78.2 93 54.8
Medtr7g116920 Medicago truncatula HOM05D004050 ORTHO05D005162 3.4e-13 78.2 93 54.8
Lj9A592T69 Lonicera japonica HOM05D004050 ORTHO05D005162 4.5e-13 77.8 95 50.5
Oeu036584.1 Olea europaea HOM05D004050 ORTHO05D005162 4.5e-13 77.8 95 52.6
PGR004G0443 Punica granatum HOM05D004050 ORTHO05D005162 5.9e-13 77.4 95 52.6
Potri.014G094300 Populus trichocarpa HOM05D004050 ORTHO05D005162 7.7e-13 77.0 95 50.5
GSVIVG01027043001 Vitis vinifera HOM05D004050 ORTHO05D005162 7.7e-13 77.0 93 51.6
Dinv43889 Davidia involucrata HOM05D004050 ORTHO05D005162 1.0e-12 76.6 95 51.6
Psat3g003960 Pisum sativum HOM05D004050 ORTHO05D005162 1.0e-12 76.6 93 52.7
MD01G1224600 Malus domestica HOM05D004050 ORTHO05D005162 1.7e-12 75.9 93 49.5
Actinidia02806 Actinidia chinensis HOM05D004050 ORTHO05D005162 2.2e-12 75.5 94 48.9
COL.COLO4_27283 Corchorus olitorius HOM05D004050 ORTHO05D005162 2.2e-12 75.5 95 50.5
HanXRQChr17g0562601 Helianthus annuus HOM05D004050 ORTHO05D005162 2.9e-12 75.1 95 51.6
MD13G1191700 Malus domestica HOM05D004050 ORTHO05D005162 2.9e-12 75.1 95 48.4
arahy.Tifrunner.gnm1.ann1.K2G0UT Arachis hypogaea HOM05D004050 ORTHO05D005162 3.8e-12 74.7 78 57.7
Gohir.A11G094100 Gossypium hirsutum HOM05D004050 ORTHO05D005162 3.8e-12 74.7 95 48.4
Sed0000372 Sechium edule HOM05D004050 ORTHO05D005162 3.8e-12 74.7 95 48.4
Sed0001564 Sechium edule HOM05D004050 ORTHO05D005162 3.8e-12 74.7 95 48.4
CDE10G0991 Ceratophyllum demersum HOM05D004050 ORTHO05D005162 5.0e-12 74.3 93 49.5
CiPaw.06G050500 Carya illinoinensis HOM05D004050 ORTHO05D005162 6.5e-12 73.9 95 50.5
Cc02_g38930 Coffea canephora HOM05D004050 ORTHO05D005162 6.5e-12 73.9 95 50.5
Lsat_1_v5_gn_4_33601 Lactuca sativa HOM05D004050 ORTHO05D005162 6.5e-12 73.9 95 49.5
vmacro13201 Vaccinium macrocarpon HOM05D004050 ORTHO05D005162 8.5e-12 73.6 95 50.5
Nitab4.5_0000305g0180 Nicotiana tabacum HOM05D004050 ORTHO05D005162 1.1e-11 73.2 95 49.5
Aqoxy7G00205 Aquilegia oxysepala HOM05D004050 ORTHO05D005162 1.4e-11 72.8 95 47.4
Nn2g12429 Nelumbo nucifera HOM05D004050 ORTHO05D005162 1.4e-11 72.8 95 52.6
TWI14G0799 Tripterygium wilfordii HOM05D004050 ORTHO05D005162 1.4e-11 72.8 95 49.5
EL10Ac1g00318 Beta vulgaris HOM05D004050 ORTHO05D005162 1.9e-11 72.4 95 48.4
CAN.G986.49 Capsicum annuum HOM05D004050 ORTHO05D005162 1.9e-11 72.4 95 49.5
Hma1.2p1_0384F.1_g140990 Hydrangea macrophylla HOM05D004050 ORTHO05D005162 1.9e-11 72.4 95 48.4
MBI07_g20434_MAGBIO Magnolia biondii HOM05D004050 ORTHO05D005162 1.9e-11 72.4 95 47.4
Thecc.01G348200 Theobroma cacao HOM05D004050 ORTHO05D005162 1.9e-11 72.4 95 47.4
Cpa.g.sc194.16 Carica papaya HOM05D004050 ORTHO05D005162 2.5e-11 72.0 95 48.4
ClCG02G014060 Citrullus lanatus HOM05D004050 ORTHO05D005162 3.2e-11 71.6 92 47.8
CsaV3_5G006110 Cucumis sativus L. HOM05D004050 ORTHO05D005162 3.2e-11 71.6 92 46.7
ECA234G2549 Erigeron canadensis HOM05D004050 ORTHO05D005162 3.2e-11 71.6 95 49.5
Eucgr.F04376 Eucalyptus grandis HOM05D004050 ORTHO05D005162 3.2e-11 71.6 95 47.4
Gohir.D11G099100 Gossypium hirsutum HOM05D004050 ORTHO05D005162 3.2e-11 71.6 95 47.4
Prupe.1G011800 Prunus persica HOM05D004050 ORTHO05D005162 3.2e-11 71.6 95 46.3
Nn8g40347 Nelumbo nucifera HOM05D004050 ORTHO05D005162 4.2e-11 71.2 93 51.6
RcHm_v2.0_Chr4g0416511 Rosa chinensis HOM05D004050 ORTHO05D005162 4.2e-11 71.2 95 47.4
RcHm_v2.0_Chr6g0268411 Rosa chinensis HOM05D004050 ORTHO05D005162 4.2e-11 71.2 95 46.3
CSS0013339 Camellia sinensis var. sinensis HOM05D004050 ORTHO05D005162 7.2e-11 70.5 95 48.4
MELO3C011748.2 Cucumis melo HOM05D004050 ORTHO05D005162 7.2e-11 70.5 92 45.7
Migut.B01830 Erythranthe guttata HOM05D004050 ORTHO05D005162 7.2e-11 70.5 95 48.4
MSTRG.20884 Avicennia marina HOM05D004050 ORTHO05D005162 1.2e-10 69.7 95 49.5
CANSAT56G4345 Cannabis sativa HOM05D004050 ORTHO05D005162 1.2e-10 69.7 93 47.3
AUR62004446 Chenopodium quinoa HOM05D004050 ORTHO05D005162 1.2e-10 69.7 93 48.4
Duzib138G1937 Durio zibethinus HOM05D004050 ORTHO05D005162 1.2e-10 69.7 95 46.3
TAR375G0239 Trochodendron aralioides HOM05D004050 ORTHO05D005162 1.2e-10 69.7 95 47.4
FvH4_2g10710 Fragaria vesca HOM05D004050 ORTHO05D005162 2.1e-10 68.9 95 46.3
FAN24G2599 Fragaria x ananassa HOM05D004050 ORTHO05D005162 2.1e-10 68.9 95 46.3
SGA_v2.0_scaffold548G52849 Striga asiatica HOM05D004050 ORTHO05D005162 2.1e-10 68.9 95 49.5
SGA_v2.0_scaffold5G02982 Striga asiatica HOM05D004050 ORTHO05D005162 2.1e-10 68.9 95 49.5
DCAR_006962 Daucus carota HOM05D004050 ORTHO05D005162 2.7e-10 68.6 94 46.8
FvH4_4g15330 Fragaria vesca HOM05D004050 ORTHO05D005162 2.7e-10 68.6 95 46.3
FAN12G2119 Fragaria x ananassa HOM05D004050 ORTHO05D005162 2.7e-10 68.6 95 46.3
Nitab4.5_0007386g0030 Nicotiana tabacum HOM05D004050 ORTHO05D005162 3.6e-10 68.2 95 47.4
RcHm_v2.0_Chr7g0217091 Rosa chinensis HOM05D004050 ORTHO05D005162 3.6e-10 68.2 95 46.3
Peaxi162Scf01012g00123 Petunia axillaris HOM05D004050 ORTHO05D005162 1.4e-09 66.2 95 46.3
Solyc01g095480.4 Solanum lycopersicum HOM05D004050 ORTHO05D005162 1.4e-09 66.2 93 46.2
Sopen01g039230 Solanum pennellii HOM05D004050 ORTHO05D005162 1.4e-09 66.2 93 46.2
PGSC0003DMG400000206 Solanum tuberosum HOM05D004050 ORTHO05D005162 1.4e-09 66.2 93 46.2
unitig_747.g21326 Utricularia gibba HOM05D004050 ORTHO05D005162 1.4e-09 66.2 95 46.3
arahy.Tifrunner.gnm1.ann1.XQ2X1T Arachis hypogaea HOM05D000273 ORTHO05D005162 1.8e-09 65.9 81 50.6
FAN15G2127 Fragaria x ananassa HOM05D004050 ORTHO05D005162 3.0e-09 65.1 91 46.2
Sabra14G0068900 Salix brachista HOM05D004050 ORTHO05D005162 3.0e-09 65.1 82 45.1
SalBow3G2972 Salvia bowleyana HOM05D004050 ORTHO05D005162 3.0e-09 65.1 95 46.3
SHI28346 Sapria himalayana HOM05D004050 ORTHO05D005162 3.0e-09 65.1 87 43.7
Ciclev10021944m.g Citrus clementina HOM05D004050 ORTHO05D005162 3.9e-09 64.7 95 45.3
Haze_19365 Corylus avellana HOM05D004050 ORTHO05D005162 3.9e-09 64.7 81 46.9
PSO675G5387 Papaver somniferum HOM05D004050 ORTHO05D005162 5.1e-09 64.3 95 44.2
Zm00001eb343390 Zea mays HOM05D004050 ORTHO05D005162 5.1e-09 64.3 93 45.2
MD16G1191800 Malus domestica HOM05D004050 ORTHO05D005162 1.1e-08 63.2 80 45.0
Atru.chr5.615 Acer truncatum HOM05D004050 ORTHO05D005162 1.5e-08 62.8 93 44.1
PSO782G0629 Papaver somniferum HOM05D004050 ORTHO05D005162 2.5e-08 62.0 95 42.1
Gorai.007G105300 Gossypium raimondii HOM05D004050 ORTHO05D005162 3.3e-08 61.6 80 43.8
vmacro12382 Vaccinium macrocarpon HOM05D004050 ORTHO05D005162 3.3e-08 61.6 79 46.8
arahy.Tifrunner.gnm1.ann1.NKMC5K Arachis hypogaea HOM05D004050 ORTHO05D013487 4.3e-08 61.2 45 75.6
PSO063G2231 Papaver somniferum HOM05D004050 ORTHO05D005162 4.3e-08 61.2 95 42.1
arahy.Tifrunner.gnm1.ann1.QC3BRB Arachis hypogaea HOM05D004050 ORTHO05D005162 5.7e-08 60.8 82 52.4
THA.LOC104805548 Tarenaya hassleriana HOM05D004050 ORTHO05D005162 5.7e-08 60.8 93 41.9
Thhalv10006211m.g Eutrema salsugineum HOM05D004050 ORTHO05D005162 7.4e-08 60.5 93 43.0
FAN07G1668 Fragaria x ananassa HOM05D004050 ORTHO05D005162 7.4e-08 60.5 82 41.5
Os09g0252000 Oryza sativa ssp. japonica HOM05D004050 ORTHO05D005162 7.4e-08 60.5 93 40.9
Sc01g0003000 Simmondsia chinensis HOM05D004050 ORTHO05D005162 1.3e-07 59.7 79 45.6
CiPaw.05G179000 Carya illinoinensis HOM05D004050 ORTHO05D005162 2.2e-07 58.9 79 44.3
THA.LOC104817331 Tarenaya hassleriana HOM05D004050 ORTHO05D005162 2.2e-07 58.9 95 40.0
AT3G61620 Arabidopsis thaliana HOM05D004050 ORTHO05D005162 2.8e-07 58.5 95 43.2
AUR62023504 Chenopodium quinoa HOM05D004050 ORTHO05D005162 2.8e-07 58.5 80 43.8
FAN20G0802 Fragaria x ananassa HOM05D004050 ORTHO05D005162 3.7e-07 58.2 82 40.2
PSO541G3611 Papaver somniferum HOM05D004050 ORTHO05D005162 3.7e-07 58.2 95 42.1
RcHm_v2.0_Chr6g0271671 Rosa chinensis HOM05D004050 ORTHO05D005162 4.8e-07 57.8 80 40.0
HPP92_009158 Vanilla planifolia HOM05D004050 ORTHO05D005162 4.8e-07 57.8 80 41.2
AL5G44010 Arabidopsis lyrata HOM05D004050 ORTHO05D005162 6.3e-07 57.4 95 42.1
BcaB02g07365 Brassica carinata HOM05D004050 ORTHO05D005162 6.3e-07 57.4 95 42.1
BcaC07g40663 Brassica carinata HOM05D004050 ORTHO05D005162 6.3e-07 57.4 95 42.1
BcaC08g45143 Brassica carinata HOM05D004050 ORTHO05D005162 6.3e-07 57.4 95 42.1
A09p53690 Brassica napus HOM05D004050 ORTHO05D005162 6.3e-07 57.4 95 42.1
C06p27620 Brassica napus HOM05D004050 ORTHO05D005162 6.3e-07 57.4 95 42.1
C08p36470 Brassica napus HOM05D004050 ORTHO05D005162 6.3e-07 57.4 95 42.1
BolC8t51230H Brassica oleracea HOM05D004050 ORTHO05D005162 6.3e-07 57.4 95 42.1
BraA09t40791Z Brassica rapa HOM05D004050 ORTHO05D005162 6.3e-07 57.4 95 42.1
Carub.0006s1683 Capsella rubella HOM05D004050 ORTHO05D005162 6.3e-07 57.4 95 42.1
Sp5g01790 Schrenkiella parvula HOM05D004050 ORTHO05D005162 6.3e-07 57.4 95 42.1
arahy.Tifrunner.gnm1.ann1.LKP54T Arachis hypogaea HOM05D004050 ORTHO05D005162 1.4e-06 56.2 62 61.3
BolC6t37931H Brassica oleracea HOM05D004050 ORTHO05D005162 1.4e-06 56.2 95 41.1
BraA07t30204Z Brassica rapa HOM05D004050 ORTHO05D005162 1.4e-06 56.2 95 41.1
arahy.Tifrunner.gnm1.ann1.3CFA1R Arachis hypogaea HOM05D004050 ORTHO05D013487 1.8e-06 55.8 45 68.9
Carub.0005s2831 Capsella rubella HOM05D004050 ORTHO05D005162 1.8e-06 55.8 95 41.1
CARHR171930 Cardamine hirsuta HOM05D004050 ORTHO05D005162 1.8e-06 55.8 95 41.1
Rhsim07G0007400 Rhododendron simsii HOM05D004050 ORTHO05D005162 3.1e-06 55.1 83 44.6
Aa31LG10G15380 Aethionema arabicum HOM05D004050 ORTHO05D005162 4.1e-06 54.7 95 40.0
arahy.Tifrunner.gnm1.ann1.61RGRV Arachis hypogaea HOM05D004050 ORTHO05D005162 4.1e-06 54.7 54 57.4
SEGI_08389 Sequoiadendron giganteum HOM05D004050 ORTHO05D005162 4.1e-06 54.7 81 35.8
C06p27780 Brassica napus HOM05D004050 ORTHO05D005162 9.1e-06 53.5 93 41.9
BolC6t37946H Brassica oleracea HOM05D004050 ORTHO05D005162 9.1e-06 53.5 93 41.9


User provided reference genes

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