Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 2060.8 1100 100.0
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1991.9 1100 96.9
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 0.0e+00 1607.4 1097 78.6
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1605.1 1106 77.6
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1600.9 1104 77.8
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 0.0e+00 1597.0 1101 78.1
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1577.4 1102 75.8
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 0.0e+00 1573.1 1105 76.9
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 0.0e+00 1563.1 1103 76.5
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 0.0e+00 1557.7 1105 75.3
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 0.0e+00 1541.6 1058 78.2
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 0.0e+00 1412.5 1099 66.3
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 0.0e+00 1383.6 1145 66.7
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 0.0e+00 1350.5 1102 66.4
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 0.0e+00 1349.7 1101 64.6
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 0.0e+00 1342.8 1103 65.4
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 0.0e+00 1325.5 1097 64.4
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 0.0e+00 1314.3 1102 65.1
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 0.0e+00 1312.7 1099 64.1
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 0.0e+00 1291.6 1096 64.6
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 0.0e+00 1279.6 1095 62.9
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 0.0e+00 1276.9 1095 63.6
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1276.5 1104 63.1
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 0.0e+00 1272.7 1101 62.2
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1271.9 1104 62.7
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 0.0e+00 1263.4 972 66.6
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 0.0e+00 1262.7 1099 63.8
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1259.2 1098 62.8
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 0.0e+00 1258.8 1104 62.4
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 0.0e+00 1257.7 1098 62.8
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1254.2 1120 61.8
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1248.8 1098 62.6
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 0.0e+00 1243.8 1106 62.4
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 0.0e+00 1241.5 1099 61.2
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 0.0e+00 1238.8 1098 60.8
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 0.0e+00 1236.1 1094 62.2
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 0.0e+00 1223.0 1076 62.7
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 0.0e+00 1218.8 1065 63.4
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 0.0e+00 1204.9 1083 59.2
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 0.0e+00 1201.8 1105 59.9
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 0.0e+00 1198.3 1110 61.8
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 0.0e+00 1198.0 1103 58.1
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 0.0e+00 1189.5 1105 58.3
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 0.0e+00 1185.2 1105 59.6
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 0.0e+00 1154.4 1103 57.6
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1152.9 1098 56.9
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 0.0e+00 1138.6 1101 57.5
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 0.0e+00 1127.5 1078 59.6
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 0.0e+00 1123.2 1213 51.6
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 0.0e+00 1117.1 1100 57.8
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 0.0e+00 1115.9 1097 56.6
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 0.0e+00 1113.2 1097 56.3
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1105.9 1101 57.1
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 0.0e+00 1105.5 1100 57.5
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1102.8 1101 57.8
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 0.0e+00 1096.6 1102 55.8
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 0.0e+00 1089.3 1115 57.3
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 0.0e+00 1088.6 1098 57.3
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 0.0e+00 1083.6 1100 56.2
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 0.0e+00 1083.2 1129 54.8
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1082.8 1096 55.8
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 0.0e+00 1080.9 1098 54.7
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 0.0e+00 1078.2 1097 55.7
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1076.2 1121 55.8
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 1.5e-311 1073.2 1101 55.4
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 7.4e-310 1067.4 1097 55.2
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 4.8e-309 1064.7 1102 55.0
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 5.0e-306 1054.7 1067 55.9
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 7.2e-305 1050.8 1102 55.5
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 8.0e-304 1047.3 1179 52.8
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 5.2e-303 1044.6 1096 54.3
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 5.2e-303 1044.6 1011 55.2
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 8.8e-303 1043.9 1096 54.4
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 8.8e-303 1043.9 1098 54.6
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 2.0e-302 1042.7 1123 53.4
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 8.8e-295 1017.3 972 55.3
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 1.5e-294 1016.5 1101 51.1
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 8.3e-285 984.2 1097 51.0
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 2.9e-282 975.7 1097 49.2
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 5.0e-282 974.9 1103 50.2
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 8.9e-271 937.6 1108 52.3
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 3.3e-257 892.5 1119 49.8
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 1.7e-245 853.6 636 74.4
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 6.0e-235 818.5 1114 45.8
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 7.9e-219 765.0 1114 42.1
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 7.9e-219 765.0 1114 42.1
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 5.1e-218 762.3 599 66.8
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 3.7e-216 756.1 644 60.6
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.8e-208 729.9 1138 41.5
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.2e-203 714.5 723 53.8
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 2.2e-181 640.6 437 76.2
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 3.4e-177 626.7 500 62.2
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 3.1e-175 620.2 1013 37.1
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.7e-171 607.1 1070 35.8
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.3e-133 481.9 431 56.8
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 8.7e-109 399.4 465 44.9
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 1.9e-108 398.3 849 31.3
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 1.3e-104 385.6 445 54.4
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 3.7e-91 340.9 450 50.0
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 7.4e-84 316.6 377 48.5
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 1.0e-77 296.2 338 52.1
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.8e-77 295.4 219 62.6
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 2.6e-73 281.6 409 46.5
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 1.3e-72 279.3 969 27.5
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 5.2e-69 267.3 287 51.9
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 4.4e-68 264.2 457 35.7
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 1.2e-65 256.1 818 26.5
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 1.5e-47 196.1 659 27.8
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 1.4e-45 189.5 158 60.8
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 1.1e-42 179.9 259 46.7
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 7.8e-41 173.7 189 55.0
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 7.5e-36 157.1 87 85.1
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.1e-31 143.3 143 54.5
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 1.2e-30 139.8 141 57.4
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 3.4e-28 131.7 90 67.8
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.4e-26 126.3 119 49.6
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 3.2e-26 125.2 160 45.6
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 4.1e-26 124.8 111 62.2
CSS0028497 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D026321 1.2e-25 123.2 169 62.1
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 2.7e-25 122.1 122 50.8
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.5e-23 115.5 106 55.7
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 5.6e-23 114.4 95 56.8
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 6.2e-22 110.9 104 48.1
BcaB06g25819 Brassica carinata HOM05D005298 ORTHO05D008015 1.2e-20 106.7 221 47.5
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 5.8e-20 104.4 114 42.1
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 7.6e-20 104.0 101 56.4
ATR0605G314 Amborella trichopoda HOM05D005298 ORTHO05D023441 2.4e-18 99.0 88 51.1
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 4.6e-17 94.7 129 36.4
Os11g0693900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D026321 3.9e-16 91.7 195 46.2
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 5.6e-15 87.8 129 35.7
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 7.3e-15 87.4 48 83.3
HanXRQChr03g0062991 Helianthus annuus HOM05D002786 ORTHO05D003493 4.7e-14 84.7 662 22.2
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 2.4e-13 82.4 646 21.7
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 6.9e-13 80.9 84 45.2
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 1.5e-12 79.7 84 44.0
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 4.4e-12 78.2 648 22.2
BolC6t37745H Brassica oleracea HOM05D002786 ORTHO05D003493 1.7e-11 76.3 632 21.7
BcaC08g44950 Brassica carinata HOM05D002786 ORTHO05D003493 2.2e-11 75.9 632 21.7
C06p25840 Brassica napus HOM05D002786 ORTHO05D003493 2.2e-11 75.9 632 21.7
Aa31LG5G5320 Aethionema arabicum HOM05D002786 ORTHO05D003493 3.8e-11 75.1 635 21.4
ECA246G5341 Erigeron canadensis HOM05D002786 ORTHO05D003493 4.9e-11 74.7 652 21.5
TPR.G21809 Trifolium pratense HOM05D005298 ORTHO05D037798 4.9e-11 74.7 62 59.7
ATR0049G027 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.1e-10 73.6 65 50.8
AT3G59020 Arabidopsis thaliana HOM05D002786 ORTHO05D003493 1.1e-10 73.6 591 21.7
BcaB02g07490 Brassica carinata HOM05D002786 ORTHO05D003493 3.2e-10 72.0 632 21.4
BcaB02g08232 Brassica carinata HOM05D002786 ORTHO05D003493 3.2e-10 72.0 632 21.2
A07p24410 Brassica napus HOM05D002786 ORTHO05D003493 3.2e-10 72.0 632 21.4
BraA07t30088Z Brassica rapa HOM05D002786 ORTHO05D003493 3.2e-10 72.0 632 21.4
BcaC02g10037 Brassica carinata HOM05D002786 ORTHO05D003493 9.3e-10 70.5 632 21.2
C04p33640 Brassica napus HOM05D002786 ORTHO05D003493 9.3e-10 70.5 632 21.2
A04p02290 Brassica napus HOM05D002786 ORTHO05D003493 1.6e-09 69.7 632 21.0
BraA04t15960Z Brassica rapa HOM05D002786 ORTHO05D003493 1.6e-09 69.7 632 21.0
AL5G40900 Arabidopsis lyrata HOM05D002786 ORTHO05D003493 2.1e-09 69.3 633 21.0
CiPaw.01G108500 Carya illinoinensis HOM05D002786 ORTHO05D003493 2.1e-09 69.3 653 21.6
ECA234G1297 Erigeron canadensis HOM05D002786 ORTHO05D003493 3.5e-09 68.6 664 21.1
TPR.G13833 Trifolium pratense HOM05D005298 ORTHO05D037798 3.5e-09 68.6 61 52.5
Aa31LG10G13510 Aethionema arabicum HOM05D002786 ORTHO05D003493 6.0e-09 67.8 637 21.2
CARHR169430 Cardamine hirsuta HOM05D002786 ORTHO05D003493 1.0e-08 67.0 630 22.1
THA.LOC104803420 Tarenaya hassleriana HOM05D002786 ORTHO05D003493 1.0e-08 67.0 674 21.4
Carub.0005s2578 Capsella rubella HOM05D002786 ORTHO05D003493 5.1e-08 64.7 632 21.4
BolC4t24933H Brassica oleracea HOM05D002786 ORTHO05D003493 6.6e-08 64.3 423 22.0
Thhalv10005763m.g Eutrema salsugineum HOM05D002786 ORTHO05D003493 6.6e-08 64.3 630 21.0
Sp5g03960 Schrenkiella parvula HOM05D002786 ORTHO05D003493 6.6e-08 64.3 642 21.0
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 1.5e-07 63.2 583 21.3


User provided reference genes

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