Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 9.5e-43 176.4 87 100.0
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 2.3e-41 171.8 87 97.7
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 5.2e-41 170.6 87 96.6
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 2.9e-39 164.9 87 92.0
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 6.6e-36 153.7 86 84.9
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 1.5e-35 152.5 83 86.7
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 3.3e-35 151.4 82 89.0
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 3.3e-35 151.4 82 89.0
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 9.5e-35 149.8 82 87.8
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.2e-34 149.4 82 87.8
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 2.8e-34 148.3 82 86.6
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 3.6e-34 147.9 82 87.8
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 3.6e-34 147.9 82 86.6
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 4.7e-34 147.5 83 84.3
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 8.0e-34 146.7 86 82.6
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 1.1e-33 146.4 86 81.4
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 3.1e-33 144.8 86 80.2
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 3.1e-33 144.8 83 83.1
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 6.8e-33 143.7 78 92.3
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 1.7e-31 139.0 87 73.6
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 4.9e-31 137.5 83 75.9
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 8.3e-31 136.7 82 78.0
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 8.3e-31 136.7 86 74.4
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 2.4e-30 135.2 82 78.0
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.4e-30 135.2 86 70.9
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 3.2e-30 134.8 86 70.9
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.2e-30 134.8 86 70.9
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.2e-30 134.8 86 70.9
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.2e-30 134.8 86 70.9
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.2e-30 134.8 86 70.9
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 3.2e-30 134.8 81 77.8
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 4.1e-30 134.4 86 73.3
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 5.4e-30 134.0 86 73.3
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 7.0e-30 133.7 86 73.3
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 7.0e-30 133.7 83 74.7
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 2.1e-29 132.1 87 71.3
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 2.1e-29 132.1 86 69.8
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 2.7e-29 131.7 82 74.4
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 2.7e-29 131.7 86 68.6
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 4.6e-29 131.0 82 74.4
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.6e-29 131.0 86 68.6
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 4.6e-29 131.0 85 70.6
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 6.0e-29 130.6 80 75.0
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 6.0e-29 130.6 82 73.2
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 6.0e-29 130.6 82 73.2
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 1.0e-28 129.8 82 75.6
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 1.0e-28 129.8 87 67.8
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.0e-28 129.8 80 75.0
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.3e-28 129.4 82 74.4
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 1.7e-28 129.0 85 70.6
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 1.7e-28 129.0 82 74.4
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 1.7e-28 129.0 86 67.4
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.3e-28 128.6 86 68.6
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 2.3e-28 128.6 82 73.2
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 3.0e-28 128.3 86 68.6
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 3.0e-28 128.3 87 69.0
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 3.9e-28 127.9 87 70.1
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 3.9e-28 127.9 82 74.4
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.9e-28 127.9 86 67.4
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 5.1e-28 127.5 86 70.9
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 5.1e-28 127.5 86 70.9
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 5.1e-28 127.5 82 70.7
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 6.6e-28 127.1 84 71.4
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.6e-28 127.1 86 68.6
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.6e-28 127.1 86 68.6
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 6.6e-28 127.1 86 68.6
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 6.6e-28 127.1 81 72.8
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 8.6e-28 126.7 86 70.9
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 1.1e-27 126.3 87 69.0
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 1.1e-27 126.3 87 69.0
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.1e-27 126.3 86 68.6
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 1.1e-27 126.3 83 68.7
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 1.5e-27 125.9 82 69.5
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.5e-27 125.9 82 69.5
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 2.5e-27 125.2 87 67.8
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 2.5e-27 125.2 86 67.4
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 2.5e-27 125.2 86 65.1
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 3.3e-27 124.8 82 73.2
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.3e-27 124.4 86 67.4
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 5.6e-27 124.0 86 65.1
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 5.6e-27 124.0 85 67.1
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 7.3e-27 123.6 82 67.1
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 7.3e-27 123.6 82 68.3
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 9.5e-27 123.2 87 65.5
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 1.2e-26 122.9 84 66.7
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 1.2e-26 122.9 82 68.3
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.2e-26 122.9 86 66.3
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.2e-26 122.9 86 66.3
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 1.6e-26 122.5 85 65.9
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.6e-26 122.5 85 65.9
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 1.6e-26 122.5 85 65.9
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 1.6e-26 122.5 85 65.9
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 1.6e-26 122.5 85 65.9
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 1.6e-26 122.5 87 64.4
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 2.1e-26 122.1 86 64.0
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 2.8e-26 121.7 85 65.9
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 4.7e-26 120.9 82 68.3
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 4.7e-26 120.9 85 64.7
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 4.7e-26 120.9 84 65.5
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 4.7e-26 120.9 84 65.5
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 4.7e-26 120.9 84 65.5
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 4.7e-26 120.9 76 72.4
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 4.7e-26 120.9 86 65.1
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 6.2e-26 120.6 86 64.0
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 6.2e-26 120.6 87 64.4
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 6.2e-26 120.6 84 65.5
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 6.2e-26 120.6 76 71.1
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 6.2e-26 120.6 86 70.9
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 6.2e-26 120.6 85 68.2
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 8.1e-26 120.2 83 66.3
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 8.1e-26 120.2 86 62.8
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 1.1e-25 119.8 82 67.1
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.8e-25 119.0 82 65.9
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 3.1e-25 118.2 87 62.1
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 3.1e-25 118.2 86 64.0
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 4.0e-25 117.9 81 69.1
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 5.2e-25 117.5 82 65.9
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 5.2e-25 117.5 84 64.3
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.2e-24 116.3 76 68.4
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.5e-24 115.9 86 62.8
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 1.5e-24 115.9 81 65.4
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 2.6e-24 115.2 73 76.7
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 4.4e-24 114.4 76 67.1
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 3.7e-23 111.3 86 59.3
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 4.9e-23 110.9 78 65.4
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 6.4e-23 110.5 86 60.5
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.4e-22 109.4 83 60.2
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.4e-22 108.6 85 62.4
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.2e-22 108.2 78 64.1
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 1.2e-21 106.3 80 60.0
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 3.5e-21 104.8 73 71.2
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 7.8e-21 103.6 80 61.2
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 2.3e-20 102.1 77 61.0
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 8.6e-20 100.1 76 61.8
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.9e-19 99.0 84 51.2
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 3.3e-19 98.2 55 76.4
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 7.3e-19 97.1 78 53.8
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 4.7e-18 94.4 72 62.5
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.8e-17 92.4 73 57.5
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 4.0e-17 91.3 66 63.6
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.2e-16 89.7 74 52.7
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 4.4e-16 87.8 81 50.6
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 4.4e-16 87.8 81 50.6
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.3e-15 86.3 74 51.4
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 1.7e-15 85.9 81 53.1
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 2.2e-15 85.5 86 45.3
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 5.4e-14 80.9 81 45.7
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 6.6e-12 73.9 77 42.9
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 1.9e-11 72.4 82 43.9
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.6e-10 68.2 51 51.0
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-09 65.9 42 71.4


User provided reference genes

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