Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 2.9e-241 838.2 437 100.0
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 2.0e-237 825.5 437 98.9
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 1.0e-193 680.2 438 82.4
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.7e-193 679.5 445 80.9
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 1.1e-190 670.2 444 80.0
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 1.2e-189 666.8 438 81.7
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 3.2e-187 658.7 444 79.1
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 6.6e-185 651.0 437 78.9
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 5.6e-184 647.9 444 79.3
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 2.1e-183 646.0 444 78.8
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 2.4e-179 632.5 447 77.9
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 4.7e-175 618.2 444 76.6
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 2.4e-171 605.9 438 76.5
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 2.6e-165 585.9 439 72.9
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 1.3e-159 567.0 448 70.1
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 2.1e-159 566.2 447 69.8
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 3.6e-159 565.5 447 69.6
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.2e-157 560.5 449 69.3
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.4e-155 552.7 440 69.3
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 2.4e-155 552.7 447 68.5
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 2.4e-155 552.7 441 69.2
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 3.2e-155 552.4 474 65.6
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 4.2e-155 552.0 441 69.4
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.2e-155 552.0 441 69.4
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.2e-154 550.4 441 69.2
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 1.0e-153 547.4 492 64.2
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 1.8e-153 546.6 445 67.9
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 2.3e-153 546.2 460 66.7
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.9e-153 545.4 441 69.6
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 3.9e-153 545.4 449 69.0
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.5e-152 542.7 441 68.7
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 4.3e-152 542.0 446 69.1
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 5.6e-152 541.6 446 67.9
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 7.4e-152 541.2 441 68.5
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 5.3e-150 535.0 447 67.3
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 4.5e-149 531.9 449 66.6
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 1.7e-148 530.0 453 65.6
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 2.5e-147 526.2 457 66.7
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 7.1e-147 524.6 450 65.1
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 1.6e-146 523.5 447 65.8
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 2.7e-146 522.7 453 66.9
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 6.0e-146 521.5 442 68.1
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.8e-145 520.0 435 67.6
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 5.1e-145 518.5 445 64.0
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 7.4e-144 514.6 448 64.7
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.3e-143 513.8 447 65.5
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.3e-143 513.8 439 67.0
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 2.1e-143 513.1 447 65.5
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 2.8e-143 512.7 451 61.9
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 3.7e-143 512.3 444 64.0
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 8.2e-143 511.1 440 66.1
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 3.1e-142 509.2 449 64.6
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 4.0e-142 508.8 445 64.9
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 9.0e-142 507.7 447 62.9
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 4.5e-141 505.4 448 64.3
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 5.8e-141 505.0 447 63.1
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 7.6e-141 504.6 454 64.8
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 1.0e-140 504.2 494 59.3
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.3e-140 503.8 443 65.0
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.2e-140 503.1 445 63.8
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 3.8e-140 502.3 447 62.9
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 3.8e-140 502.3 459 63.6
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 1.1e-139 500.7 465 62.6
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 1.9e-139 500.0 451 61.0
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 1.9e-139 500.0 442 64.3
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 4.6e-138 495.4 441 63.3
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 4.6e-138 495.4 452 60.8
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 5.1e-137 491.9 499 56.9
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 1.1e-136 490.7 450 63.3
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.1e-136 490.7 447 63.8
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 1.1e-136 490.7 444 61.9
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 4.3e-136 488.8 451 60.5
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 7.4e-136 488.0 453 62.9
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 1.3e-135 487.3 456 62.1
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 4.8e-135 485.3 444 62.6
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 1.1e-134 484.2 456 62.3
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 1.4e-134 483.8 456 61.8
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 1.8e-134 483.4 439 62.2
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.8e-134 483.4 428 63.1
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 2.4e-134 483.0 456 61.6
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 3.1e-134 482.6 457 61.9
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.2e-133 480.7 442 62.7
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.0e-133 479.9 444 62.4
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.0e-133 479.9 444 62.4
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 4.5e-133 478.8 448 62.1
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 6.5e-132 474.9 472 57.6
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 8.5e-132 474.6 454 60.8
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 9.4e-131 471.1 442 61.3
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 4.6e-130 468.8 448 60.5
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 4.6e-130 468.8 446 60.5
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 1.7e-127 460.3 446 60.5
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 2.2e-127 459.9 447 60.0
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 2.8e-127 459.5 445 60.2
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 3.1e-126 456.1 445 61.1
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 9.1e-126 454.5 444 60.1
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 2.1e-122 443.4 431 61.7
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 6.1e-122 441.8 447 60.9
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 2.0e-120 436.8 450 60.4
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.8e-118 430.3 444 59.0
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 2.4e-118 429.9 435 57.9
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 5.3e-118 428.7 314 74.2
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 1.5e-117 427.2 433 58.4
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.0e-117 426.8 440 57.5
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 7.7e-117 424.9 462 55.8
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 6.1e-114 415.2 447 55.9
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.4e-113 414.1 444 55.6
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 3.7e-111 406.0 384 61.5
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 7.0e-110 401.7 444 57.0
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 3.2e-107 392.9 473 52.6
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 5.5e-107 392.1 388 57.5
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 7.2e-107 391.7 449 53.5
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 1.4e-105 387.5 441 54.0
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 3.0e-105 386.3 323 64.4
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 2.0e-101 373.6 439 54.0
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 5.0e-100 369.0 447 52.6
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 1.8e-94 350.5 434 50.9
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 5.4e-94 349.0 380 55.5
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.6e-93 347.4 377 56.5
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 2.8e-90 336.7 329 60.2
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 1.4e-89 334.3 447 49.4
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 4.4e-88 329.3 506 43.9
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 4.9e-87 325.9 481 47.0
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 1.9e-83 313.9 316 58.9
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 8.3e-71 271.9 213 68.5
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 3.2e-70 270.0 169 79.3
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 6.0e-69 265.8 447 43.8
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 6.6e-68 262.3 447 43.8
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.9e-59 234.2 355 47.9
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 9.6e-59 231.9 345 46.1
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 8.4e-55 218.8 137 78.8
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 8.4e-55 218.8 270 50.4
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 8.4e-55 218.8 270 50.4
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 7.6e-40 169.1 304 43.4
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 8.4e-39 165.6 198 51.0
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 1.1e-35 155.2 74 95.9
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 2.4e-33 147.5 106 70.8
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.1e-33 147.1 91 81.3
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.7e-31 141.4 83 83.1
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 1.1e-30 138.7 173 46.2
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 1.9e-30 137.9 131 57.3
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 1.9e-30 137.9 131 57.3
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 1.6e-29 134.8 425 29.9
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.8e-28 131.3 258 40.3
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 1.1e-27 128.6 69 87.0
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 5.7e-27 126.3 122 57.4
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 8.2e-26 122.5 68 83.8
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 1.8e-25 121.3 87 72.4
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 3.2e-22 110.5 132 48.5
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 4.8e-18 96.7 520 26.3
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 1.2e-13 82.0 69 66.7
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 2.7e-13 80.9 56 75.0
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 1.5e-11 75.1 91 51.6


User provided reference genes

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