Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.58UXC0 Arachis hypogaea HOM05D000651 ORTHO05D003990 3.9e-273 944.5 597 100.0
arahy.Tifrunner.gnm1.ann1.34Z3BG Arachis hypogaea HOM05D000651 ORTHO05D003990 3.8e-244 848.2 635 88.8
arahy.Tifrunner.gnm1.ann1.DY9A0E Arachis hypogaea HOM05D000651 ORTHO05D003990 1.6e-242 842.8 633 88.3
arahy.Tifrunner.gnm1.ann1.7T6UUP Arachis hypogaea HOM05D000651 ORTHO05D003435 4.4e-240 834.7 651 86.2
arahy.Tifrunner.gnm1.ann1.RG7NZB Arachis hypogaea HOM05D000651 ORTHO05D003990 3.6e-125 453.0 325 76.9
arahy.Tifrunner.gnm1.ann1.DCIQ1B Arachis hypogaea HOM05D000651 ORTHO05D003990 7.8e-96 355.5 275 70.5
arahy.Tifrunner.gnm1.ann1.1CZ7RW Arachis hypogaea HOM05D000651 ORTHO05D003990 1.3e-74 285.0 154 92.2
arahy.Tifrunner.gnm1.ann1.UZQ5G1 Arachis hypogaea HOM05D000651 ORTHO05D003990 3.3e-38 164.1 149 62.4
Medtr4g084700 Medicago truncatula HOM05D000651 ORTHO05D003990 1.8e-36 158.3 447 33.1
arahy.Tifrunner.gnm1.ann1.F0QMSU Arachis hypogaea HOM05D000651 ORTHO05D003990 3.1e-36 157.5 95 85.3
Glyma.07G218500 Glycine max HOM05D000651 ORTHO05D003990 2.6e-35 154.5 497 33.2
arahy.Tifrunner.gnm1.ann1.ZQQT14 Arachis hypogaea HOM05D000651 ORTHO05D003990 5.0e-34 150.2 80 92.5
VMungo0251G2258 Vigna mungo HOM05D000651 ORTHO05D003990 6.5e-34 149.8 481 31.4
TPR.G38350 Trifolium pratense HOM05D000651 ORTHO05D003990 5.5e-33 146.7 353 36.0
Psat7g128680 Pisum sativum HOM05D000651 ORTHO05D003990 2.7e-32 144.4 150 54.7
Glyma.09G108100 Glycine max HOM05D000651 ORTHO05D003990 2.3e-31 141.4 146 51.4
Phvul.002G094900 Phaseolus vulgaris HOM05D000651 ORTHO05D003990 2.6e-30 137.9 470 30.9
arahy.Tifrunner.gnm1.ann1.FQ9DWZ Arachis hypogaea HOM05D000651 ORTHO05D003990 7.5e-30 136.3 78 87.2
Lj4g0023305 Lotus japonicus HOM05D000651 ORTHO05D003990 1.7e-29 135.2 167 46.1
Lalb_Chr05g0219531 Lupinus albus HOM05D000651 ORTHO05D003990 2.0e-27 128.3 534 29.8
arahy.Tifrunner.gnm1.ann1.UQR3KX Arachis hypogaea HOM05D000651 ORTHO05D003990 1.3e-26 125.6 70 81.4
Ca_08976_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 1.7e-26 125.2 122 53.3
Ca_26223_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 2.9e-26 124.4 122 53.3
TPR.G29102 Trifolium pratense HOM05D000651 ORTHO05D003990 2.7e-24 117.9 129 49.6
TPR.G31286 Trifolium pratense HOM05D000651 ORTHO05D003990 2.7e-24 117.9 141 44.7
Duzib248G1110 Durio zibethinus HOM05D000651 ORTHO05D003990 4.7e-24 117.1 163 41.1
CSS0040679 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 1.8e-23 115.2 174 42.5
Medtr1g048840 Medicago truncatula HOM05D000651 ORTHO05D003990 6.8e-23 113.2 124 48.4
CSS0042175 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 1.2e-22 112.5 173 39.9
Thecc.02G282500 Theobroma cacao HOM05D000651 ORTHO05D003990 1.5e-22 112.1 257 34.6
Manes.17G077700 Manihot esculenta HOM05D000651 ORTHO05D003990 5.7e-22 110.2 465 26.7
Ciclev10015830m.g Citrus clementina HOM05D000651 ORTHO05D003990 2.2e-21 108.2 275 34.2
Lsat_1_v5_gn_3_55361 Lactuca sativa HOM05D000651 ORTHO05D003990 2.2e-21 108.2 162 43.8
ClCG01G006200 Citrullus lanatus HOM05D021888 ORTHO05D003990 4.8e-21 107.1 183 38.8
FvH4_4g32502 Fragaria vesca HOM05D000651 ORTHO05D003990 8.3e-21 106.3 263 32.3
TPR.G19130 Trifolium pratense HOM05D000651 ORTHO05D003990 8.3e-21 106.3 125 48.0
MD13G1024700 Malus domestica HOM05D000651 ORTHO05D003990 1.4e-20 105.5 269 33.5
FAN12G2732 Fragaria x ananassa HOM05D000651 ORTHO05D003990 1.8e-20 105.1 263 32.3
RcHm_v2.0_Chr4g0441381 Rosa chinensis HOM05D000651 ORTHO05D003990 2.4e-20 104.8 146 42.5
Eucgr.J02425 Eucalyptus grandis HOM05D000651 ORTHO05D003990 4.1e-20 104.0 317 31.9
Eucgr.J02424 Eucalyptus grandis HOM05D008822 ORTHO05D003990 5.4e-20 103.6 129 45.7
COL.COLO4_20494 Corchorus olitorius HOM05D000651 ORTHO05D003990 7.0e-20 103.2 136 44.1
FAN22G1281 Fragaria x ananassa HOM05D000137 ORTHO05D000503 7.0e-20 103.2 255 31.0
Duzib251G0891 Durio zibethinus HOM05D000651 ORTHO05D003990 9.1e-20 102.8 272 33.5
MELO3C005307.2 Cucumis melo HOM05D021888 ORTHO05D003990 1.2e-19 102.4 219 36.1
Rhsim09G0097300 Rhododendron simsii HOM05D000651 ORTHO05D003990 2.0e-19 101.7 140 42.1
Actinidia04066 Actinidia chinensis HOM05D000896 ORTHO05D000594 3.5e-19 100.9 164 42.1
SGA_v2.0_scaffold39G15180 Striga asiatica HOM05D000651 ORTHO05D003990 4.5e-19 100.5 153 40.5
CSS0022216 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 5.9e-19 100.1 256 32.0
Gohir.A04G141600 Gossypium hirsutum HOM05D000651 ORTHO05D003990 5.9e-19 100.1 175 39.4
Gorai.012G181100 Gossypium raimondii HOM05D000651 ORTHO05D003990 1.0e-18 99.4 190 37.4
Manes.17G077833 Manihot esculenta HOM05D000651 ORTHO05D003990 1.0e-18 99.4 355 28.5
RcHm_v2.0_Chr7g0206321 Rosa chinensis HOM05D015272 ORTHO05D022694 1.0e-18 99.4 166 39.8
CSS0020544 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 1.3e-18 99.0 173 37.6
CAN.G698.4 Capsicum annuum HOM05D000651 ORTHO05D003990 1.3e-18 99.0 137 41.6
CsaV3_5G028450 Cucumis sativus L. HOM05D021888 ORTHO05D003990 1.3e-18 99.0 193 35.8
Hund01243 Selenicereus undatus HOM05D008822 ORTHO05D003990 2.3e-18 98.2 259 32.8
TWI31G1292 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 2.3e-18 98.2 174 40.2
Gohir.D04G187300 Gossypium hirsutum HOM05D000651 ORTHO05D003990 2.9e-18 97.8 190 36.8
Ca_18736_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 1.1e-17 95.9 229 36.2
Cc11_g08580 Coffea canephora HOM05D000651 ORTHO05D003990 1.5e-17 95.5 121 44.6
Peaxi162Scf00253g01127 Petunia axillaris HOM05D000651 ORTHO05D003990 1.5e-17 95.5 127 40.2
TPR.G32510 Trifolium pratense HOM05D000651 ORTHO05D003990 1.9e-17 95.1 154 40.9
HanXRQChr15g0476831 Helianthus annuus HOM05D000651 ORTHO05D003990 2.5e-17 94.7 135 43.0
Nitab4.5_0007359g0040 Nicotiana tabacum HOM05D000651 ORTHO05D003990 2.5e-17 94.7 144 41.0
CSS0033557 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 3.3e-17 94.4 165 39.4
Medtr4g019680 Medicago truncatula HOM05D000651 ORTHO05D003990 3.3e-17 94.4 107 46.7
AUR62038169 Chenopodium quinoa HOM05D008822 ORTHO05D003990 4.2e-17 94.0 102 48.0
CSS0042277 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 9.5e-17 92.8 162 39.5
ECA246G2591 Erigeron canadensis HOM05D000651 ORTHO05D003990 9.5e-17 92.8 185 38.9
Actinidia14976 Actinidia chinensis HOM05D000651 ORTHO05D003990 1.6e-16 92.0 278 30.6
Nitab4.5_0004230g0020 Nicotiana tabacum HOM05D000651 ORTHO05D003990 1.6e-16 92.0 136 40.4
Medtr7g106530 Medicago truncatula HOM05D000651 ORTHO05D003990 2.1e-16 91.7 107 45.8
Nitab4.5_0007504g0010 Nicotiana tabacum HOM05D000651 ORTHO05D003990 2.8e-16 91.3 115 45.2
AUR62038081 Chenopodium quinoa HOM05D000294 ORTHO05D003990 3.6e-16 90.9 102 48.0
EL10Ac1g00119 Beta vulgaris HOM05D000294 ORTHO05D003990 4.7e-16 90.5 132 43.2
AUR62042685 Chenopodium quinoa HOM05D008822 ORTHO05D003990 4.7e-16 90.5 131 36.6
AUR62032767 Chenopodium quinoa HOM05D008822 ORTHO05D003990 6.1e-16 90.1 131 36.6
PGR042G3954 Punica granatum HOM05D000651 ORTHO05D003990 8.0e-16 89.7 319 29.5
TPR.G19120 Trifolium pratense HOM05D000651 ORTHO05D003990 8.0e-16 89.7 126 45.2
Migut.E00431 Erythranthe guttata HOM05D000651 ORTHO05D003990 1.0e-15 89.4 128 35.2
Peaxi162Scf00047g00334 Petunia axillaris HOM05D000651 ORTHO05D003990 1.4e-15 89.0 132 37.1
Rhsim09G0066300 Rhododendron simsii HOM05D000651 ORTHO05D003990 1.4e-15 89.0 199 36.2
PGSC0003DMG401006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 2.3e-15 88.2 120 39.2
Cc11_g08570 Coffea canephora HOM05D000651 ORTHO05D003990 3.0e-15 87.8 382 28.0
Prupe.5G053600 Prunus persica HOM05D015272 ORTHO05D003990 3.0e-15 87.8 238 29.8
QL10p040527 Quercus lobata HOM05D015316 ORTHO05D003990 3.0e-15 87.8 224 31.7
Sc04g0005050 Simmondsia chinensis HOM05D000651 ORTHO05D003990 3.0e-15 87.8 170 35.3
TAR629G0208 Trochodendron aralioides HOM05D008822 ORTHO05D003990 3.0e-15 87.8 137 38.7
Sopen11g008610 Solanum pennellii HOM05D000651 ORTHO05D003990 4.0e-15 87.4 126 39.7
SGA_v2.0_scaffold50G18496 Striga asiatica HOM05D008822 ORTHO05D003990 4.0e-15 87.4 135 42.2
Dinv07655 Davidia involucrata HOM05D000651 ORTHO05D003990 6.8e-15 86.7 207 34.3
Nitab4.5_0000926g0060 Nicotiana tabacum HOM05D000651 ORTHO05D003990 6.8e-15 86.7 115 43.5
Sopen11g008650 Solanum pennellii HOM05D000651 ORTHO05D003990 1.2e-14 85.9 112 39.3
Ah.04g154370 Amaranthus hybridus HOM05D000294 ORTHO05D003990 2.0e-14 85.1 76 52.6
Solyc11g013590.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 3.4e-14 84.3 116 40.5
Sopen11g008640 Solanum pennellii HOM05D000651 ORTHO05D003990 3.4e-14 84.3 126 38.1
PGSC0003DMG402005954 Solanum tuberosum HOM05D000651 ORTHO05D003990 4.4e-14 84.0 109 41.3
Solyc04g007720.3 Solanum lycopersicum HOM05D000651 ORTHO05D003990 5.7e-14 83.6 110 41.8
Sopen04g002810 Solanum pennellii HOM05D000651 ORTHO05D003990 5.7e-14 83.6 119 39.5
Solyc11g013580.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 7.5e-14 83.2 107 41.1
Cfa020037 Carpinus fangiana HOM05D015316 ORTHO05D003990 1.7e-13 82.0 91 45.1
arahy.Tifrunner.gnm1.ann1.MKJD0U Arachis hypogaea HOM05D000651 ORTHO05D003990 2.8e-13 81.3 96 54.2
DCAR_007298 Daucus carota HOM05D008822 ORTHO05D003990 2.8e-13 81.3 267 27.7
Aqoxy7G03756 Aquilegia oxysepala HOM05D000294 ORTHO05D003990 4.9e-13 80.5 137 38.7
CiPaw.03G044500 Carya illinoinensis HOM05D015316 ORTHO05D003990 8.3e-13 79.7 366 27.6
Nitab4.5_0000426g0240 Nicotiana tabacum HOM05D000651 ORTHO05D003990 8.3e-13 79.7 117 40.2
CANSAT35G0183 Cannabis sativa HOM05D008822 ORTHO05D003990 1.1e-12 79.3 313 29.1
Sopen10g027700 Solanum pennellii HOM05D000651 ORTHO05D003990 1.4e-12 79.0 121 38.8
CiPaw.04G078100 Carya illinoinensis HOM05D015316 ORTHO05D003990 1.8e-12 78.6 96 49.0
Solyc11g013680.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 1.8e-12 78.6 111 38.7
PGSC0003DMG402006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 1.8e-12 78.6 198 30.8
TWI79G0768 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 2.4e-12 78.2 255 30.2
FAN17G1493 Fragaria x ananassa HOM05D000137 ORTHO05D000503 3.2e-12 77.8 271 29.2
Sopen10g027660 Solanum pennellii HOM05D000002 ORTHO05D003990 3.2e-12 77.8 134 37.3
Sopen10g027670 Solanum pennellii HOM05D000651 ORTHO05D003990 3.2e-12 77.8 119 39.5
Solyc11g013630.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 4.1e-12 77.4 201 31.3
Lsat_1_v5_gn_3_55381 Lactuca sativa HOM05D008822 ORTHO05D003990 7.0e-12 76.6 86 48.8
unitig_0.g2324 Utricularia gibba HOM05D000651 ORTHO05D003990 7.0e-12 76.6 154 35.7
Potri.005G069700 Populus trichocarpa HOM05D008822 ORTHO05D050460 5.9e-11 73.6 233 30.5
arahy.Tifrunner.gnm1.ann1.9L0M57 Arachis hypogaea HOM05D000651 ORTHO05D003990 7.8e-11 73.2 98 48.0
MD06G1045800 Malus domestica HOM05D015272 ORTHO05D003990 1.7e-10 72.0 281 28.5
DCAR_007300 Daucus carota HOM05D002189 ORTHO05D002233 2.3e-10 71.6 170 30.0
vmacro00413 Vaccinium macrocarpon HOM05D008822 ORTHO05D003990 2.3e-10 71.6 273 29.3
arahy.Tifrunner.gnm1.ann1.YH1KLB Arachis hypogaea HOM05D000651 ORTHO05D003990 2.9e-10 71.2 80 51.2
Cpa.g.sc37.24 Carica papaya HOM05D008822 ORTHO05D003990 2.9e-10 71.2 310 29.7
QL10p028121 Quercus lobata HOM05D008822 ORTHO05D003990 2.9e-10 71.2 197 28.9
Sopen10g027720 Solanum pennellii HOM05D000651 ORTHO05D003990 2.9e-10 71.2 167 30.5
Solyc11g013600.2 Solanum lycopersicum HOM05D000651 ORTHO05D003990 6.6e-10 70.1 106 37.7
Haze_20167 Corylus avellana HOM05D015316 ORTHO05D003990 8.6e-10 69.7 339 25.4
SalBow8G0982 Salvia bowleyana HOM05D008822 ORTHO05D003990 1.5e-09 68.9 428 24.1
A10p28000 Brassica napus HOM05D008822 ORTHO05D003990 2.5e-09 68.2 100 42.0
Dinv14425 Davidia involucrata HOM05D008822 ORTHO05D003990 2.5e-09 68.2 57 61.4
BraA10t44850Z Brassica rapa HOM05D008822 ORTHO05D003990 3.3e-09 67.8 113 40.7
PSO017G3155 Papaver somniferum HOM05D008822 ORTHO05D003990 7.3e-09 66.6 127 33.9
AL6G19530 Arabidopsis lyrata HOM05D008822 ORTHO05D003990 9.5e-09 66.2 95 41.1
HanXRQChr15g0476841 Helianthus annuus HOM05D008822 ORTHO05D003990 9.5e-09 66.2 85 42.4
Ah.13g073970 Amaranthus hybridus HOM05D000294 ORTHO05D003990 1.2e-08 65.9 210 32.4
Nn4g24185 Nelumbo nucifera HOM05D008822 ORTHO05D003990 1.2e-08 65.9 189 32.8
Sed0005667 Sechium edule HOM05D021888 ORTHO05D003990 1.2e-08 65.9 124 35.5
AT5G08780 Arabidopsis thaliana HOM05D008822 ORTHO05D003990 2.1e-08 65.1 108 38.0
Migut.L00358 Erythranthe guttata HOM05D000651 ORTHO05D003990 2.8e-08 64.7 62 50.0
Thhalv10015336m.g Eutrema salsugineum HOM05D008822 ORTHO05D003990 2.8e-08 64.7 139 33.1
Aa31LG3G17790 Aethionema arabicum HOM05D008822 ORTHO05D003990 3.6e-08 64.3 101 34.7
THA.LOC104800215 Tarenaya hassleriana HOM05D008822 ORTHO05D003990 3.6e-08 64.3 260 27.7
Cpa.g.sc37.25 Carica papaya HOM05D008822 ORTHO05D003990 8.0e-08 63.2 273 30.0
EL10As3g23335 Beta vulgaris HOM05D000294 ORTHO05D000177 2.3e-07 61.6 119 38.7
TPR.G32483 Trifolium pratense HOM05D000651 ORTHO05D003990 2.3e-07 61.6 63 52.4
Carub.0006s0775 Capsella rubella HOM05D008822 ORTHO05D003990 3.1e-07 61.2 66 48.5
TPR.G19124 Trifolium pratense HOM05D000651 ORTHO05D003990 4.0e-07 60.8 70 47.1
Atru.chr12.1001 Acer truncatum HOM05D008822 ORTHO05D003990 5.2e-07 60.5 149 32.9
MBI19_g32901_MAGBIO Magnolia biondii HOM05D008822 ORTHO05D003990 2.0e-06 58.5 61 49.2
TAR362G0743 Trochodendron aralioides HOM05D001085 ORTHO05D000895 4.4e-06 57.4 63 44.4
HPP92_003328 Vanilla planifolia HOM05D032523 ORTHO05D003990 4.4e-06 57.4 77 37.7
CARHR204230 Cardamine hirsuta HOM05D008822 ORTHO05D003990 5.8e-06 57.0 236 26.7
DCAR_030223 Daucus carota HOM05D017778 ORTHO05D003990 5.8e-06 57.0 166 29.5
Aqoxy3G04208 Aquilegia oxysepala HOM05D032976 ORTHO05D003990 7.5e-06 56.6 108 30.6
BcaB08g37226 Brassica carinata HOM05D008822 ORTHO05D003990 7.5e-06 56.6 252 27.4
HPP92_003335 Vanilla planifolia HOM05D032523 ORTHO05D003990 7.5e-06 56.6 77 37.7


User provided reference genes

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