Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 2.3e-136 488.8 234 100.0
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 3.4e-135 485.0 234 99.1
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 2.1e-89 332.8 240 66.7
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 8.1e-89 330.9 240 67.1
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.0e-83 313.9 240 62.1
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 1.3e-83 313.5 240 62.5
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.1e-82 310.5 240 63.3
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 1.3e-81 307.0 240 62.9
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 3.4e-79 298.9 241 59.8
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 7.1e-77 291.2 240 58.8
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 4.6e-76 288.5 237 57.4
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 7.9e-76 287.7 245 59.2
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 7.4e-74 281.2 206 66.5
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 9.6e-74 280.8 236 58.5
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 3.2e-61 239.2 170 67.1
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 6.9e-56 221.5 216 49.5
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 1.1e-50 204.1 223 45.3
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 1.9e-50 203.4 246 40.7
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 3.3e-50 202.6 215 43.3
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 9.7e-50 201.1 201 45.8
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 9.7e-50 201.1 204 44.6
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 9.7e-50 201.1 204 44.6
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 1.3e-49 200.7 207 44.9
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.6e-49 200.3 203 48.8
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.6e-49 200.3 203 48.8
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 1.6e-49 200.3 230 43.5
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 2.8e-49 199.5 201 45.3
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.8e-49 199.5 200 47.0
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 6.3e-49 198.4 236 42.8
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 6.3e-49 198.4 196 47.4
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 8.2e-49 198.0 208 46.2
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 1.1e-48 197.6 201 44.8
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.8e-48 196.8 201 44.8
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 6.9e-48 194.9 241 41.1
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 9.1e-48 194.5 201 43.8
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 9.1e-48 194.5 201 43.8
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.2e-47 194.1 201 43.8
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 1.5e-47 193.7 210 43.3
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 2.0e-47 193.4 185 47.6
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 2.6e-47 193.0 195 43.1
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 2.6e-47 193.0 195 43.1
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 2.6e-47 193.0 211 44.1
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 3.4e-47 192.6 201 43.8
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 3.4e-47 192.6 201 43.8
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 7.7e-47 191.4 195 47.2
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.0e-46 191.0 201 43.8
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 1.3e-46 190.7 192 43.8
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 1.7e-46 190.3 184 46.7
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 2.9e-46 189.5 206 44.7
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 2.9e-46 189.5 224 41.1
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 6.5e-46 188.3 246 40.2
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 1.4e-45 187.2 201 42.3
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 1.9e-45 186.8 181 48.1
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 2.5e-45 186.4 204 43.1
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 2.5e-45 186.4 195 44.1
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 3.2e-45 186.0 201 44.3
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 5.5e-45 185.3 201 44.3
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 5.5e-45 185.3 200 43.5
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 7.2e-45 184.9 201 43.8
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 9.4e-45 184.5 201 43.8
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 9.4e-45 184.5 201 43.8
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 9.4e-45 184.5 199 42.7
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 2.1e-44 183.3 192 41.1
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 2.7e-44 183.0 216 41.7
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 3.6e-44 182.6 197 43.7
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 4.6e-44 182.2 193 44.0
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 4.6e-44 182.2 210 41.0
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 7.9e-44 181.4 211 41.2
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 1.0e-43 181.0 210 42.9
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.0e-43 181.0 234 38.5
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 1.4e-43 180.6 201 41.3
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.8e-43 180.3 193 43.0
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 2.3e-43 179.9 193 42.5
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.0e-43 179.5 193 44.6
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 3.9e-43 179.1 176 46.6
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 3.9e-43 179.1 175 46.3
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 3.9e-43 179.1 243 39.1
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 3.9e-43 179.1 196 43.4
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 5.1e-43 178.7 210 38.6
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 6.7e-43 178.3 203 40.9
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 6.7e-43 178.3 192 42.2
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 1.1e-42 177.6 211 40.3
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 2.0e-42 176.8 185 41.6
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 4.4e-42 175.6 218 38.5
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 5.7e-42 175.3 205 40.0
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.7e-41 173.7 205 40.0
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 2.2e-41 173.3 198 40.4
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 3.7e-41 172.6 192 40.1
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 4.8e-41 172.2 223 39.9
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 6.3e-41 171.8 215 40.0
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 2.4e-40 169.9 191 42.4
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 6.9e-40 168.3 163 47.2
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 6.9e-40 168.3 239 36.8
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 9.1e-40 167.9 186 41.4
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.2e-39 167.5 191 40.3
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 2.0e-39 166.8 226 39.8
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 2.0e-39 166.8 197 40.6
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.6e-39 166.4 162 46.3
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 4.5e-39 165.6 196 38.8
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 4.5e-39 165.6 182 40.7
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.0e-38 164.5 229 39.3
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 6.5e-38 161.8 199 42.2
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 1.4e-37 160.6 194 39.7
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 2.5e-37 159.8 182 44.5
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 5.5e-37 158.7 218 38.1
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 9.4e-37 157.9 158 48.7
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 9.4e-37 157.9 218 38.5
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 1.2e-36 157.5 238 35.7
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 2.7e-36 156.4 211 39.8
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 1.0e-35 154.5 235 37.0
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.4e-35 154.1 221 36.2
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 6.7e-35 151.8 226 35.8
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 2.0e-34 150.2 193 37.3
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 2.0e-34 150.2 158 47.5
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 3.3e-34 149.4 203 37.4
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 4.4e-34 149.1 195 37.4
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 1.3e-33 147.5 211 39.3
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 6.3e-33 145.2 183 36.6
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 6.3e-33 145.2 221 35.7
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.1e-32 142.5 238 33.6
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 5.3e-32 142.1 147 44.2
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 7.0e-32 141.7 146 44.5
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 7.0e-32 141.7 203 35.0
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 9.1e-32 141.4 147 44.2
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 3.5e-31 139.4 226 36.3
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 5.9e-31 138.7 207 34.8
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 7.7e-31 138.3 195 34.9
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 2.9e-30 136.3 212 31.6
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 5.0e-30 135.6 200 36.0
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 5.0e-30 135.6 146 43.2
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 1.5e-29 134.0 140 42.9
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 1.5e-29 134.0 188 37.2
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 2.5e-29 133.3 200 35.5
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.5e-29 133.3 147 44.9
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.6e-28 130.6 235 34.5
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 2.1e-28 130.2 185 34.6
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 4.7e-28 129.0 140 42.1
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 2.3e-27 126.7 149 43.6
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.2e-27 125.6 221 32.6
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.2e-26 124.4 117 44.4
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 8.2e-25 118.2 174 34.5
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 4.1e-24 115.9 183 32.8
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.2e-23 114.4 158 36.1
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 8.5e-22 108.2 179 30.2
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.2e-20 104.4 205 29.8
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 6.1e-20 102.1 204 29.9
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.7e-17 94.0 89 49.4
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 3.7e-17 92.8 159 32.1
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.4e-16 90.9 101 41.6
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 1.4e-16 90.9 156 30.8
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.8e-16 90.5 101 41.6
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 5.4e-16 89.0 214 28.5
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 4.5e-15 85.9 173 29.5
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.9e-13 80.5 218 26.1
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 1.5e-10 70.9 102 41.2
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 3.4e-10 69.7 176 26.1
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 2.8e-09 66.6 142 28.9
Lj1g0021452 Lotus japonicus HOM05D004214 ORTHO05D004963 3.1e-08 63.2 54 53.7
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 1.3e-06 57.8 57 43.9
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 3.8e-06 56.2 79 35.4


User provided reference genes

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