Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 2.0e-111 406.4 307 100.0
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-77 294.3 247 79.8
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 9.3e-77 291.2 247 73.3
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 1.4e-72 277.3 247 75.7
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 6.7e-51 205.3 248 54.4
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 2.6e-47 193.4 248 58.9
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 1.6e-44 184.1 144 70.1
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 2.7e-44 183.3 248 56.9
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 5.9e-39 165.6 245 41.2
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 1.7e-38 164.1 250 39.6
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 5.5e-37 159.1 248 44.8
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 1.6e-36 157.5 247 39.7
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.6e-36 157.5 247 39.7
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 4.4e-34 149.4 248 38.3
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 2.7e-31 140.2 163 47.2
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 2.7e-31 140.2 140 52.1
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 4.5e-31 139.4 140 52.1
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 8.8e-27 125.2 175 40.0
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 1.5e-26 124.4 153 45.1
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 5.9e-23 112.5 248 45.6
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 7.8e-23 112.1 175 60.0
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 1.7e-22 110.9 189 39.2
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 6.6e-22 109.0 140 43.6
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 2.5e-21 107.1 247 46.2
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 2.1e-20 104.0 245 44.9
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 6.1e-20 102.4 140 40.7
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 2.3e-19 100.5 139 43.9
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 3.0e-19 100.1 195 39.5
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 4.0e-19 99.8 178 36.5
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 8.9e-19 98.6 142 40.1
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 2.0e-18 97.4 244 44.3
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 2.6e-18 97.1 83 59.0
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 2.6e-18 97.1 141 39.7
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 9.8e-18 95.1 267 31.8
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 1.7e-17 94.4 141 40.4
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 1.7e-17 94.4 141 40.4
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 3.7e-17 93.2 245 28.2
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 4.9e-17 92.8 123 43.1
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 4.9e-17 92.8 123 43.1
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 4.9e-17 92.8 141 36.9
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 4.9e-17 92.8 141 36.9
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 4.9e-17 92.8 244 27.0
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 8.3e-17 92.0 245 33.1
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 1.8e-16 90.9 139 37.4
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 3.2e-16 90.1 122 44.3
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 4.1e-16 89.7 142 38.7
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 7.0e-16 89.0 141 36.9
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 9.2e-16 88.6 138 37.0
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 1.2e-15 88.2 201 29.9
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 1.6e-15 87.8 195 28.7
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 4.6e-15 86.3 141 36.2
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 5.9e-15 85.9 195 28.2
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 7.8e-15 85.5 141 36.2
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 1.0e-14 85.1 117 48.7
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 1.0e-14 85.1 110 45.5
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 1.3e-14 84.7 117 42.7
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 1.3e-14 84.7 141 35.5
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 1.7e-14 84.3 117 41.9
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 1.7e-14 84.3 142 35.9
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 3.0e-14 83.6 141 35.5
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 8.6e-14 82.0 117 41.0
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 1.5e-13 81.3 138 34.8
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 1.5e-13 81.3 196 33.2
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 1.9e-13 80.9 200 28.5
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 1.9e-13 80.9 248 41.1
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 3.3e-13 80.1 117 41.0
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 3.3e-13 80.1 117 41.0
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 3.3e-13 80.1 141 36.2
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.3e-13 80.1 141 34.0
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.3e-13 80.1 141 34.0
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.3e-13 80.1 141 34.0
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 5.6e-13 79.3 192 32.3
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 7.3e-13 79.0 139 33.8
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 1.2e-12 78.2 141 33.3
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 2.1e-12 77.4 141 31.9
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 2.8e-12 77.0 140 32.9
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 4.7e-12 76.3 141 34.0
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 4.7e-12 76.3 141 34.0
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 8.0e-12 75.5 141 35.5
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 1.8e-11 74.3 133 36.1
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 1.8e-11 74.3 139 32.4
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 2.3e-11 73.9 141 29.1
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 3.1e-11 73.6 139 33.1
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 4.0e-11 73.2 139 32.4
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 4.0e-11 73.2 139 32.4
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 5.2e-11 72.8 141 31.2
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 1.2e-10 71.6 141 32.6
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 2.6e-10 70.5 141 29.1
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 5.8e-10 69.3 134 30.6
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 2.9e-09 67.0 142 32.4
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 6.4e-09 65.9 159 52.2
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 1.1e-08 65.1 139 30.2
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 1.4e-08 64.7 129 30.2
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 1.4e-08 64.7 126 32.5
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 3.2e-08 63.5 141 27.0
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 7.0e-08 62.4 139 28.8
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 7.0e-08 62.4 141 26.2
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 2.7e-07 60.5 42 64.3
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 3.5e-07 60.1 40 65.0
Prupe.4G256300 Prunus persica HOM05D003210 ORTHO05D000001 1.7e-06 57.8 76 38.2
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 2.3e-06 57.4 61 50.8
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 6.6e-06 55.8 45 57.8
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 8.6e-06 55.5 40 55.0


User provided reference genes

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