Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 4.3e-175 617.8 307 100.0
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 1.6e-164 582.8 345 87.2
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 2.6e-79 299.7 342 52.0
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 5.8e-79 298.5 345 52.5
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 8.4e-78 294.7 351 49.9
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 6.9e-72 275.0 323 51.7
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 3.4e-71 272.7 363 47.4
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 1.3e-70 270.8 399 45.9
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 3.7e-65 252.7 318 49.4
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 7.7e-55 218.4 327 46.2
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 9.4e-53 211.5 365 42.5
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 2.1e-44 183.7 274 43.4
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 1.7e-41 174.1 348 37.9
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 1.0e-38 164.9 344 38.7
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 5.0e-38 162.5 368 37.2
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 4.7e-36 156.0 365 37.3
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 8.0e-36 155.2 377 36.3
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 8.0e-36 155.2 353 37.1
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 3.4e-34 149.8 347 36.3
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 1.1e-32 144.8 374 35.6
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 1.8e-32 144.1 374 35.6
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 2.4e-32 143.7 353 36.3
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 2.4e-32 143.7 368 36.4
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 2.7e-31 140.2 314 38.5
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 3.5e-31 139.8 330 37.3
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 2.9e-30 136.7 353 33.7
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 2.9e-30 136.7 315 38.7
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 3.8e-30 136.3 342 35.7
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 1.1e-29 134.8 141 56.7
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 2.5e-29 133.7 338 35.5
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 5.5e-29 132.5 333 36.6
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 3.6e-28 129.8 331 35.3
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 1.0e-27 128.3 374 33.7
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.0e-27 128.3 347 35.7
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 1.4e-27 127.9 397 31.7
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 1.4e-27 127.9 370 33.2
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 2.3e-27 127.1 331 35.0
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 3.0e-27 126.7 348 34.5
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 6.8e-27 125.6 349 36.1
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 8.8e-27 125.2 324 34.9
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 1.2e-26 124.8 414 30.2
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 2.0e-26 124.0 330 34.2
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 2.6e-26 123.6 339 33.9
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 7.5e-26 122.1 351 33.3
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 1.3e-25 121.3 348 33.0
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 1.3e-25 121.3 382 33.0
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 2.2e-25 120.6 367 35.1
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 8.3e-25 118.6 359 32.9
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 8.3e-25 118.6 328 34.5
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 1.4e-24 117.9 365 31.8
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 1.8e-24 117.5 383 31.9
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 1.8e-24 117.5 334 34.4
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 7.0e-24 115.5 369 32.2
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 7.0e-24 115.5 325 34.5
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 2.0e-23 114.0 344 34.0
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 2.7e-23 113.6 332 31.0
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 4.5e-23 112.8 330 35.2
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 2.9e-22 110.2 356 29.8
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 5.0e-22 109.4 335 34.3
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 5.0e-22 109.4 317 32.8
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 1.1e-21 108.2 336 33.9
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 1.1e-21 108.2 333 33.9
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 2.5e-21 107.1 350 31.1
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 2.5e-21 107.1 323 33.1
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 9.5e-21 105.1 341 31.7
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 1.2e-20 104.8 326 34.0
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 1.6e-20 104.4 357 30.5
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 2.8e-20 103.6 337 33.5
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 3.6e-20 103.2 337 33.5
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 6.1e-20 102.4 306 33.3
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 6.1e-20 102.4 338 33.7
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 6.1e-20 102.4 345 29.9
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 6.1e-20 102.4 341 31.7
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 6.1e-20 102.4 307 33.9
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 8.0e-20 102.1 341 31.7
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 8.0e-20 102.1 282 32.6
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 1.4e-19 101.3 331 31.7
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 1.4e-19 101.3 315 34.3
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 1.8e-19 100.9 331 34.7
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 2.3e-19 100.5 333 32.7
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 2.3e-19 100.5 337 32.3
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 3.0e-19 100.1 351 30.8
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 8.9e-19 98.6 387 30.2
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 2.6e-18 97.1 307 34.5
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 2.6e-18 97.1 363 29.5
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 2.6e-18 97.1 361 30.7
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 5.7e-18 95.9 312 32.7
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 1.3e-17 94.7 316 33.5
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 1.4e-16 91.3 328 30.5
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 5.4e-16 89.4 402 27.6
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 1.6e-15 87.8 333 30.6
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 2.0e-15 87.4 279 32.3
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 7.8e-15 85.5 148 41.2
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 1.3e-14 84.7 427 26.0
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 6.6e-14 82.4 401 26.9
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 1.5e-13 81.3 338 30.8
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 2.1e-12 77.4 223 32.3
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 6.2e-12 75.9 360 28.9
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 8.0e-12 75.5 256 31.2
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 1.8e-11 74.3 385 27.0
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 5.2e-11 72.8 102 43.1
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 6.8e-11 72.4 319 30.7
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 3.4e-10 70.1 435 26.0
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 4.4e-10 69.7 419 25.3
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 6.4e-09 65.9 203 32.0
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 1.4e-08 64.7 201 36.3
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.9e-08 64.3 150 34.0
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 7.0e-08 62.4 418 25.6
vmacro17886 Vaccinium macrocarpon HOM05D006001 ORTHO05D006714 1.2e-07 61.6 61 54.1
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 6.0e-07 59.3 71 53.5
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 6.0e-07 59.3 192 32.8
ECA240G2279 Erigeron canadensis HOM05D006001 ORTHO05D006714 3.0e-06 57.0 350 25.4
SHI11237 Sapria himalayana HOM05D006001 ORTHO05D006714 3.9e-06 56.6 251 28.3


User provided reference genes

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