Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 3.8e-256 887.9 516 100.0
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 2.5e-183 646.0 454 82.4
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 1.0e-152 544.3 540 62.2
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 3.4e-148 529.3 535 64.5
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 5.1e-144 515.4 570 58.9
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 1.1e-143 514.2 546 59.7
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 1.1e-135 487.6 548 60.4
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 1.6e-134 483.8 518 63.5
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 6.3e-134 481.9 595 55.3
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 2.9e-131 473.0 488 60.2
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 7.2e-130 468.4 523 57.7
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 3.4e-124 449.5 498 59.2
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 1.7e-123 447.2 567 50.1
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 1.7e-123 447.2 510 57.8
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 3.8e-123 446.0 608 48.8
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 6.5e-123 445.3 506 50.2
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 4.8e-118 429.1 541 53.2
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 6.3e-118 428.7 562 48.6
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 4.1e-117 426.0 566 50.9
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 1.2e-116 424.5 489 55.4
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 7.7e-116 421.8 548 52.2
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 1.7e-115 420.6 625 45.4
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 5.5e-114 415.6 564 48.0
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 1.2e-113 414.5 562 49.3
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 6.1e-113 412.1 500 54.6
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 1.8e-112 410.6 549 53.2
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 3.0e-112 409.8 508 53.5
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 8.8e-112 408.3 529 50.1
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.1e-111 407.9 600 52.8
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 1.1e-111 407.9 601 49.6
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 1.5e-111 407.5 493 51.3
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 3.3e-111 406.4 601 49.8
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 4.4e-111 406.0 562 48.4
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 4.8e-110 402.5 487 56.3
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 6.3e-110 402.1 591 47.9
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 8.2e-110 401.7 465 56.1
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 3.1e-109 399.8 582 47.8
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 5.3e-109 399.1 528 50.2
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 5.3e-109 399.1 494 50.8
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 9.1e-109 398.3 553 49.7
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 2.2e-107 393.7 456 50.0
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 6.5e-107 392.1 510 50.8
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 3.2e-106 389.8 499 53.1
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 9.4e-106 388.3 486 50.6
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 2.1e-105 387.1 509 51.9
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.8e-104 384.0 582 45.4
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 2.3e-104 383.6 488 52.3
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 9.7e-103 378.3 548 47.1
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 2.8e-102 376.7 560 50.4
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 1.8e-101 374.0 539 48.6
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 5.3e-101 372.5 502 49.2
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 1.2e-100 371.3 655 42.0
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 1.6e-100 370.9 444 53.2
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 3.5e-100 369.8 597 42.4
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 4.5e-100 369.4 522 52.1
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 1.0e-99 368.2 284 71.8
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 2.9e-99 366.7 558 46.2
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 3.8e-99 366.3 574 42.2
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 6.5e-99 365.5 563 45.8
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 4.2e-98 362.8 564 45.7
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 4.7e-97 359.4 564 45.4
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 6.1e-97 359.0 561 45.3
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 8.0e-97 358.6 561 44.2
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 8.0e-97 358.6 602 41.2
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 2.3e-96 357.1 562 44.5
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 8.8e-96 355.1 505 51.1
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 8.8e-96 355.1 496 48.8
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 2.0e-95 354.0 560 44.1
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 5.7e-95 352.4 493 50.9
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 5.7e-95 352.4 493 50.9
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 7.5e-95 352.1 549 45.2
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 2.2e-94 350.5 609 42.5
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 3.7e-94 349.7 582 40.5
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 3.7e-94 349.7 537 46.6
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 1.8e-93 347.4 567 43.4
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.7e-91 340.9 521 45.9
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 2.3e-91 340.5 517 47.2
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 6.6e-91 339.0 596 41.8
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 3.3e-90 336.7 550 40.9
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.8e-88 330.9 534 46.1
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 1.8e-88 330.9 517 46.8
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 2.3e-88 330.5 544 44.3
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 4.0e-88 329.7 516 44.8
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 7.5e-87 325.5 222 72.5
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 1.7e-86 324.3 555 43.4
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 7.8e-84 315.5 536 45.9
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 1.3e-83 314.7 551 42.8
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 7.3e-82 308.9 642 41.0
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.6e-81 307.8 188 87.8
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 4.4e-79 299.7 546 37.5
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 6.4e-78 295.8 484 41.1
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 1.2e-76 291.6 490 48.4
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 4.6e-76 289.7 158 97.5
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 2.3e-75 287.3 505 43.4
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 8.6e-75 285.4 218 66.1
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 1.6e-73 281.2 557 40.2
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 3.1e-72 276.9 216 69.4
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 4.4e-71 273.1 371 49.1
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 2.9e-70 270.4 551 40.8
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 2.7e-68 263.8 470 43.2
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 9.5e-66 255.4 213 60.6
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 1.4e-64 251.5 158 89.9
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 6.4e-62 242.7 148 75.7
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 2.7e-60 237.3 113 96.5
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.5e-58 231.5 167 66.5
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 2.5e-58 230.7 593 31.2
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 2.5e-58 230.7 186 59.7
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 4.3e-58 229.9 166 66.3
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 3.6e-57 226.9 213 54.5
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 3.6e-57 226.9 149 69.8
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 4.0e-56 223.4 157 66.9
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 2.0e-55 221.1 570 34.7
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 2.6e-55 220.7 215 54.0
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 3.4e-55 220.3 179 62.0
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 1.3e-54 218.4 201 58.2
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 8.4e-54 215.7 113 85.8
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 1.2e-52 211.8 324 50.0
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 3.5e-52 210.3 222 54.1
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 6.0e-52 209.5 152 64.5
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 7.8e-52 209.1 215 52.6
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 3.6e-49 200.3 149 63.8
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 2.4e-45 187.6 511 36.4
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 7.1e-45 186.0 411 42.6
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 5.8e-39 166.4 86 84.9
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 5.8e-39 166.4 86 84.9
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 2.3e-35 154.5 431 32.9
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 1.9e-34 151.4 216 39.4
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 7.4e-34 149.4 195 43.1
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 1.8e-32 144.8 130 69.2
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.2e-31 142.1 383 37.1
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.2e-31 142.1 383 37.1
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 7.6e-31 139.4 146 61.6
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 1.1e-26 125.6 144 59.0
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 4.3e-26 123.6 210 43.8
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 5.7e-26 123.2 98 63.3
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 9.6e-26 122.5 200 39.5
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 2.1e-25 121.3 134 60.4
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 1.1e-24 119.0 224 46.0
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 4.0e-24 117.1 203 46.8
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 6.5e-22 109.8 276 38.8
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 2.5e-21 107.8 171 42.1
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 5.1e-19 100.1 56 75.0
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 3.7e-17 94.0 103 55.3
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 1.4e-16 92.0 66 62.1
TPR.G17657 Trifolium pratense HOM05D004380 ORTHO05D005134 3.8e-14 84.0 125 47.2
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.2e-12 79.0 108 42.6
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 3.6e-12 77.4 115 39.1
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 3.6e-12 77.4 87 54.0
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 2.0e-10 71.6 64 57.8
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 8.2e-09 66.2 76 47.4
TPR.G23078 Trifolium pratense HOM05D004380 ORTHO05D005134 4.1e-08 63.9 42 81.0
Medtr4g081725 Medicago truncatula HOM05D004380 ORTHO05D005134 7.7e-07 59.7 49 59.2
arahy.Tifrunner.gnm1.ann1.FR68MS Arachis hypogaea HOM05D005435 ORTHO05D005134 2.9e-06 57.8 33 90.9
arahy.Tifrunner.gnm1.ann1.VXMI6Z Arachis hypogaea HOM05D004380 ORTHO05D005134 8.5e-06 56.2 50 78.0
vmacro21374 Vaccinium macrocarpon HOM05D000230 ORTHO05D011064 8.5e-06 56.2 48 56.2


User provided reference genes

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