Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.52204A Arachis hypogaea HOM05D006351 ORTHO05D007796 0.0e+00 1250.0 640 100.0
arahy.Tifrunner.gnm1.ann1.5RBZ70 Arachis hypogaea HOM05D006351 ORTHO05D007796 0.0e+00 1218.4 640 97.5
arahy.Tifrunner.gnm1.ann1.DQM65W Arachis hypogaea HOM05D006351 ORTHO05D007796 0.0e+00 1215.3 640 97.3
arahy.Tifrunner.gnm1.ann1.7H8NL8 Arachis hypogaea HOM05D006351 ORTHO05D007796 0.0e+00 1152.5 640 93.4
Psat6g028600 Pisum sativum HOM05D006351 ORTHO05D007796 8.0e-248 860.5 637 70.5
VMungo0647G0679 Vigna mungo HOM05D006351 ORTHO05D007796 5.2e-247 857.8 637 69.5
Lalb_Chr22g0361451 Lupinus albus HOM05D006351 ORTHO05D007796 2.6e-246 855.5 629 71.2
Medtr4g014840 Medicago truncatula HOM05D006351 ORTHO05D007796 4.1e-244 848.2 638 69.1
Phvul.001G047200 Phaseolus vulgaris HOM05D006351 ORTHO05D007796 9.2e-244 847.0 638 68.7
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 1.6e-243 846.3 616 70.6
Lj5g0002049 Lotus japonicus HOM05D006351 ORTHO05D007796 8.0e-240 833.9 637 68.8
TPR.G32564 Trifolium pratense HOM05D006351 ORTHO05D007796 2.0e-238 829.3 641 68.8
Glyma.17G215800 Glycine max HOM05D006351 ORTHO05D007796 3.0e-218 762.3 638 64.4
arahy.Tifrunner.gnm1.ann1.XZMU6N Arachis hypogaea HOM05D006351 ORTHO05D007796 2.3e-202 709.5 606 67.8
Haze_21455 Corylus avellana HOM05D006351 ORTHO05D007796 3.0e-194 682.6 619 58.6
QL02p020121 Quercus lobata HOM05D006351 ORTHO05D007796 1.5e-193 680.2 673 55.3
CiPaw.08G008200 Carya illinoinensis HOM05D006351 ORTHO05D007796 2.9e-189 666.0 621 56.7
Dinv03414 Davidia involucrata HOM05D006351 ORTHO05D007796 2.9e-189 666.0 624 56.6
GSVIVG01035918001 Vitis vinifera HOM05D006351 ORTHO05D007796 1.0e-186 657.5 617 57.1
Cfa013099 Carpinus fangiana HOM05D006351 ORTHO05D007796 1.3e-184 650.6 621 56.7
Prupe.1G486500 Prunus persica HOM05D006351 ORTHO05D007796 6.7e-178 628.2 619 54.8
Atru.chr7.2503_Atru.chr7.2504 Acer truncatum HOM05D006351 ORTHO05D007796 1.1e-175 620.9 621 52.2
Thecc.09G019400 Theobroma cacao HOM05D006351 ORTHO05D007796 9.1e-175 617.8 619 54.0
Manes.03G011600 Manihot esculenta HOM05D006351 ORTHO05D007796 1.3e-173 614.0 620 53.4
TAR625G1335 Trochodendron aralioides HOM05D006351 ORTHO05D007796 2.9e-173 612.8 619 51.7
TWI34G1294 Tripterygium wilfordii HOM05D006351 ORTHO05D007796 1.1e-172 610.9 630 52.2
CANSAT54G0019 Cannabis sativa HOM05D006351 ORTHO05D007796 1.9e-172 610.1 624 51.0
Duzib150G0289 Durio zibethinus HOM05D006351 ORTHO05D007796 4.2e-172 609.0 640 52.0
vmacro11222 Vaccinium macrocarpon HOM05D006351 ORTHO05D007796 5.5e-172 608.6 624 52.6
MD15G1131200 Malus domestica HOM05D006351 ORTHO05D007796 2.1e-171 606.7 617 52.7
Sabra06G0202800 Salix brachista HOM05D006351 ORTHO05D007796 6.7e-170 601.7 613 51.2
Potri.006G259600 Populus trichocarpa HOM05D006351 ORTHO05D007796 1.3e-168 597.4 610 51.3
CsaV3_4G036840 Cucumis sativus L. HOM05D006351 ORTHO05D007796 6.3e-168 595.1 615 49.9
Gohir.A07G030500 Gossypium hirsutum HOM05D006351 ORTHO05D007796 8.2e-168 594.7 634 51.6
Actinidia22310 Actinidia chinensis HOM05D006351 ORTHO05D007796 4.1e-167 592.4 627 52.3
Oeu028190.1 Olea europaea HOM05D006351 ORTHO05D007796 5.0e-165 585.5 605 50.7
Gohir.D07G034400 Gossypium hirsutum HOM05D006351 ORTHO05D007796 2.5e-164 583.2 634 51.4
Ciclev10007789m.g Citrus clementina HOM05D006351 ORTHO05D007796 4.2e-164 582.4 617 51.4
CSS0041020 Camellia sinensis var. sinensis HOM05D006351 ORTHO05D007796 5.5e-164 582.0 618 51.5
ClCG05G016570 Citrullus lanatus HOM05D006351 ORTHO05D007796 2.6e-161 573.2 638 48.1
Peaxi162Scf00116g00510 Petunia axillaris HOM05D006351 ORTHO05D007796 2.4e-159 566.6 618 51.0
Nn8g39723 Nelumbo nucifera HOM05D006351 ORTHO05D007796 4.1e-159 565.8 616 50.0
FvH4_2g28280 Fragaria vesca HOM05D006351 ORTHO05D007796 9.1e-159 564.7 580 53.1
RcHm_v2.0_Chr6g0297191 Rosa chinensis HOM05D006351 ORTHO05D007796 9.1e-159 564.7 625 50.9
Sc06g0000450 Simmondsia chinensis HOM05D006351 ORTHO05D007796 5.9e-158 562.0 627 49.1
MBI14_g15653_MAGBIO Magnolia biondii HOM05D006351 ORTHO05D007796 1.3e-157 560.8 619 48.9
Eucgr.C01685 Eucalyptus grandis HOM05D006351 ORTHO05D007796 5.0e-157 558.9 616 50.8
Sopen01g038480 Solanum pennellii HOM05D006351 ORTHO05D007796 5.5e-156 555.4 619 48.5
MSTRG.9683 Avicennia marina HOM05D006351 ORTHO05D007796 8.0e-155 551.6 615 47.8
Solyc01g094670.4 Solanum lycopersicum HOM05D006351 ORTHO05D007796 1.0e-154 551.2 619 48.0
Lj8A733T33 Lonicera japonica HOM05D006351 ORTHO05D007796 5.7e-153 545.4 680 46.6
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 1.8e-151 540.4 617 47.5
COL.COLO4_18917 Corchorus olitorius HOM05D006351 ORTHO05D007796 1.3e-149 534.3 618 48.1
PGR119G2225 Punica granatum HOM05D006351 ORTHO05D007796 1.1e-148 531.2 623 47.5
arahy.Tifrunner.gnm1.ann1.C8TN8W Arachis hypogaea HOM05D006351 ORTHO05D007796 2.1e-147 526.9 483 64.2
Hund03479 Selenicereus undatus HOM05D006351 ORTHO05D007796 1.8e-146 523.9 684 44.4
AUR62031572 Chenopodium quinoa HOM05D006351 ORTHO05D007796 6.8e-146 521.9 640 45.5
HanXRQChr16g0511151 Helianthus annuus HOM05D006351 ORTHO05D007796 1.0e-141 508.1 617 44.7
EL10Ac2g04151 Beta vulgaris HOM05D006351 ORTHO05D007796 2.3e-141 506.9 677 42.5
Aqoxy7G03341 Aquilegia oxysepala HOM05D006351 ORTHO05D007796 5.0e-141 505.8 635 44.3
Cc08_g00180 Coffea canephora HOM05D006351 ORTHO05D007796 1.5e-140 504.2 605 47.9
Migut.G00796 Erythranthe guttata HOM05D006351 ORTHO05D007796 2.5e-140 503.4 638 44.8
Lsat_1_v5_gn_6_115401 Lactuca sativa HOM05D006351 ORTHO05D007796 9.5e-140 501.5 625 46.7
DCAR_018801 Daucus carota HOM05D006351 ORTHO05D007796 2.6e-137 493.4 611 44.0
ECA246G3333 Erigeron canadensis HOM05D006351 ORTHO05D007796 5.7e-137 492.3 594 46.0
Gorai.001G036000 Gossypium raimondii HOM05D006351 ORTHO05D007796 2.9e-136 490.0 566 48.9
Carub.0006s0954 Capsella rubella HOM05D006351 ORTHO05D007796 7.8e-134 481.9 634 44.0
THA.LOC104815006 Tarenaya hassleriana HOM05D006351 ORTHO05D007796 1.0e-133 481.5 623 45.3
AL6G21650 Arabidopsis lyrata HOM05D006351 ORTHO05D007796 2.8e-131 473.4 624 44.2
Thhalv10013026m.g Eutrema salsugineum HOM05D006351 ORTHO05D007796 1.2e-129 468.0 639 43.5
AT5G11030 Arabidopsis thaliana HOM05D006351 ORTHO05D007796 2.0e-129 467.2 643 43.4
MELO3C016986.2 Cucumis melo HOM05D006351 ORTHO05D007796 1.2e-126 458.0 463 51.4
Medtr1g013030 Medicago truncatula HOM05D006351 ORTHO05D007796 6.8e-122 442.2 339 67.3
Sp6g32460 Schrenkiella parvula HOM05D006351 ORTHO05D007796 3.4e-121 439.9 644 42.4
ATR0629G052 Amborella trichopoda HOM05D006351 ORTHO05D007796 1.3e-120 438.0 616 39.8
BcaC04g19265 Brassica carinata HOM05D006351 ORTHO05D007796 2.2e-120 437.2 632 41.8
A10p26650 Brassica napus HOM05D006351 ORTHO05D007796 3.2e-119 433.3 631 41.2
C09p65820 Brassica napus HOM05D006351 ORTHO05D007796 9.2e-119 431.8 630 41.1
SGA_v2.0_scaffold12G06223 Striga asiatica HOM05D006351 ORTHO05D007796 3.5e-118 429.9 668 41.0
AUR62012449 Chenopodium quinoa HOM05D006351 ORTHO05D007796 1.3e-117 427.9 569 42.9
FAN20G2359 Fragaria x ananassa HOM05D006351 ORTHO05D007796 1.2e-115 421.4 378 56.9
BraA10t44723Z Brassica rapa HOM05D006351 ORTHO05D007796 2.1e-115 420.6 655 39.7
FAN24G1918 Fragaria x ananassa HOM05D006351 ORTHO05D007796 3.1e-114 416.8 378 56.9
HPP92_020077 Vanilla planifolia HOM05D006351 ORTHO05D007796 7.6e-113 412.1 632 38.6
FAN15G0846 Fragaria x ananassa HOM05D006351 ORTHO05D007796 5.4e-111 406.0 378 56.3
BolC9t59403H Brassica oleracea HOM05D006351 ORTHO05D007796 4.6e-110 402.9 630 39.2
CARHR202260 Cardamine hirsuta HOM05D006351 ORTHO05D007796 1.6e-107 394.4 522 44.3
Aa31LG3G16100 Aethionema arabicum HOM05D006351 ORTHO05D007796 3.6e-107 393.3 632 39.2
Cpa.g.sc187.30 Carica papaya HOM05D006351 ORTHO05D007796 2.6e-105 387.1 525 43.8
Hma1.2p1_0043F.1_g025900 Hydrangea macrophylla HOM05D006351 ORTHO05D007796 1.4e-103 381.3 437 47.1
Os08g0290100 Oryza sativa ssp. japonica HOM05D006351 ORTHO05D007796 2.7e-102 377.1 636 36.2
Sed0014901 Sechium edule HOM05D006351 ORTHO05D007796 7.8e-102 375.6 435 45.7
PSO782G3777 Papaver somniferum HOM05D006351 ORTHO05D007796 1.7e-101 374.4 545 40.6
unitig_0.g2412 Utricularia gibba HOM05D006351 ORTHO05D007796 8.7e-101 372.1 608 38.7
FAN27G0329 Fragaria x ananassa HOM05D006351 ORTHO05D007796 2.5e-100 370.5 378 51.6
Nitab4.5_0002992g0070 Nicotiana tabacum HOM05D006351 ORTHO05D007796 2.8e-99 367.1 663 36.3
Hma1.2p1_0043F.1_g025890 Hydrangea macrophylla HOM05D006351 ORTHO05D007796 1.9e-95 354.4 411 46.7
Nitab4.5_0000389g0140 Nicotiana tabacum HOM05D006351 ORTHO05D007796 3.0e-93 347.1 647 36.5
Ah.10g035670 Amaranthus hybridus HOM05D006351 ORTHO05D007796 1.3e-83 315.1 635 35.9
Zm00001eb028280 Zea mays HOM05D006351 ORTHO05D007796 1.9e-76 291.2 445 38.4
Cc11_g00420 Coffea canephora HOM05D006351 ORTHO05D007796 4.5e-73 280.0 269 54.6
CAN.G142.3 Capsicum annuum HOM05D006351 ORTHO05D007796 1.4e-58 231.9 304 44.7
Pp3c8_15630 Physcomitrium patens HOM05D006351 ORTHO05D007796 1.8e-45 188.3 495 29.1
SEGI_10292 Sequoiadendron giganteum HOM05D006351 ORTHO05D000001 8.2e-43 179.5 298 35.9
SMO200G0034 Selaginella moellendorffii HOM05D006351 ORTHO05D007796 1.0e-37 162.5 550 27.3
Mapoly0027s0143 Marchantia polymorpha HOM05D006351 ORTHO05D007796 1.4e-37 162.2 629 25.4
AagrBONN_evm.TU.Sc2ySwM_368.1425 Anthoceros agrestis HOM05D006351 ORTHO05D007796 2.0e-36 158.3 669 24.5
Pp3c20_13310 Physcomitrium patens HOM05D006351 ORTHO05D007796 8.3e-35 152.9 579 25.4
CDE02G0453 Ceratophyllum demersum HOM05D006351 ORTHO05D007796 7.0e-34 149.8 249 36.9
CANSAT25G0983 Cannabis sativa HOM05D006351 ORTHO05D007796 4.5e-33 147.1 201 41.8
FAN07G1533 Fragaria x ananassa HOM05D006351 ORTHO05D007796 4.5e-33 147.1 90 80.0
Medtr1g012280 Medicago truncatula HOM05D006351 ORTHO05D007796 2.8e-27 127.9 132 56.8
MBI14_g30358_MAGBIO Magnolia biondii HOM05D006351 ORTHO05D007796 6.6e-24 116.7 168 42.9
CAN.G142.2 Capsicum annuum HOM05D006351 ORTHO05D007796 3.4e-20 104.4 96 57.3
CAN.G142.4 Capsicum annuum HOM05D006351 ORTHO05D007796 9.8e-20 102.8 191 36.1
Medtr1g012260 Medicago truncatula HOM05D006351 ORTHO05D007796 3.5e-17 94.4 74 66.2
CBR_g18678 Chara braunii HOM05D006351 ORTHO05D007796 8.6e-16 89.7 254 27.6
Medtr1g013010 Medicago truncatula HOM05D006351 ORTHO05D007796 1.4e-10 72.4 98 44.9
Gohir.A11G232166 Gossypium hirsutum HOM05D006351 ORTHO05D007796 1.9e-10 72.0 63 54.0
Gohir.A01G131311 Gossypium hirsutum HOM05D006351 ORTHO05D007796 4.1e-10 70.9 115 39.1
Gohir.A13G118000 Gossypium hirsutum HOM05D006351 ORTHO05D007796 4.1e-10 70.9 63 55.6
Gohir.A04G102300 Gossypium hirsutum HOM05D001271 ORTHO05D007796 5.4e-10 70.5 62 54.8
MELO3C031505.2 Cucumis melo HOM05D006351 ORTHO05D007796 1.0e-08 66.2 78 46.2
Gohir.A03G098900 Gossypium hirsutum HOM05D001271 ORTHO05D007796 3.3e-07 61.2 51 58.8


User provided reference genes

Program Settings