Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.50MPSE Arachis hypogaea HOM05D006920 ORTHO05D005895 0.0e+00 1370.9 745 100.0
arahy.Tifrunner.gnm1.ann1.IGMF9F Arachis hypogaea HOM05D006920 ORTHO05D005895 0.0e+00 1187.2 726 92.0
arahy.Tifrunner.gnm1.ann1.J1TK4W Arachis hypogaea HOM05D006920 ORTHO05D005895 2.2e-140 503.8 574 55.2
Glyma.14G213000 Glycine max HOM05D006920 ORTHO05D005895 2.9e-92 344.0 788 39.7
Lj6g0023447 Lotus japonicus HOM05D006920 ORTHO05D005895 3.6e-90 337.0 969 36.2
Ca_12179_v3 Cicer arietinum L. HOM05D006920 ORTHO05D005895 4.7e-90 336.7 880 35.8
Medtr5g096500 Medicago truncatula HOM05D006920 ORTHO05D005895 8.3e-87 325.9 901 35.3
VMungo0331G1985 Vigna mungo HOM05D006920 ORTHO05D005895 2.7e-85 320.9 801 36.7
TPR.G14423 Trifolium pratense HOM05D006920 ORTHO05D005895 2.5e-83 314.3 841 34.5
Phvul.010G094400 Phaseolus vulgaris HOM05D006920 ORTHO05D005895 2.7e-77 294.3 637 39.1
Psat5g132560 Pisum sativum HOM05D006920 ORTHO05D005895 5.6e-67 260.0 614 40.9
Medtr3g053340 Medicago truncatula HOM05D006920 ORTHO05D005895 1.8e-65 255.0 887 32.4
Lj3g0019860 Lotus japonicus HOM05D006920 ORTHO05D005895 1.3e-63 248.8 727 36.9
arahy.Tifrunner.gnm1.ann1.Y2Z108 Arachis hypogaea HOM05D006920 ORTHO05D005895 9.5e-59 232.6 194 71.6
Lalb_Chr25g0278561 Lupinus albus HOM05D006920 ORTHO05D005895 4.2e-54 217.2 545 38.9
Glyma.18G092000 Glycine max HOM05D006920 ORTHO05D005895 8.7e-44 183.0 335 43.6
MD15G1209300 Malus domestica HOM05D006920 ORTHO05D005895 3.1e-41 174.5 770 30.9
RcHm_v2.0_Chr2g0093651 Rosa chinensis HOM05D006920 ORTHO05D005895 3.1e-41 174.5 791 30.0
RcHm_v2.0_Chr3g0459471 Rosa chinensis HOM05D006920 ORTHO05D005895 6.9e-41 173.3 951 30.0
Atru.chr7.1617 Acer truncatum HOM05D006920 ORTHO05D005895 3.5e-37 161.0 730 32.2
Prupe.7G207100 Prunus persica HOM05D006920 ORTHO05D005895 1.0e-36 159.5 956 29.4
Haze_25928 Corylus avellana HOM05D006920 ORTHO05D005895 8.7e-36 156.4 932 30.7
CANSAT56G3092 Cannabis sativa HOM05D006920 ORTHO05D005895 1.1e-35 156.0 943 28.8
Potri.006G148400 Populus trichocarpa HOM05D006920 ORTHO05D005895 4.3e-35 154.1 919 29.9
TWI63G0676 Tripterygium wilfordii HOM05D006920 ORTHO05D005895 4.3e-35 154.1 906 28.4
Sabra06G0117400 Salix brachista HOM05D006920 ORTHO05D005895 1.6e-34 152.1 815 31.8
Cfa003067 Carpinus fangiana HOM05D006920 ORTHO05D005895 4.8e-34 150.6 986 29.1
Dinv36779 Davidia involucrata HOM05D006920 ORTHO05D005895 1.1e-33 149.4 718 31.8
QL02p062309 Quercus lobata HOM05D006920 ORTHO05D005895 9.0e-33 146.4 991 28.8
Thecc.09G086800 Theobroma cacao HOM05D006920 ORTHO05D005895 7.6e-32 143.3 868 29.1
Manes.01G178200 Manihot esculenta HOM05D006920 ORTHO05D005895 1.0e-31 142.9 797 29.7
FvH4_1g07770 Fragaria vesca HOM05D006920 ORTHO05D005895 6.4e-31 140.2 622 31.7
Hma1.2p1_0169F.1_g074930 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 1.9e-30 138.7 848 28.8
Sed0019505 Sechium edule HOM05D006920 ORTHO05D005895 2.5e-30 138.3 894 29.4
DCAR_031337 Daucus carota HOM05D006920 ORTHO05D005895 1.6e-29 135.6 450 35.1
Cc06_g11560 Coffea canephora HOM05D006920 ORTHO05D005895 2.1e-29 135.2 472 31.6
SGA_v2.0_scaffold4G02308 Striga asiatica HOM05D006920 ORTHO05D005895 3.5e-29 134.4 823 27.6
GSVIVG01015184001 Vitis vinifera HOM05D006920 ORTHO05D005895 6.0e-29 133.7 429 38.2
Gorai.009G032200 Gossypium raimondii HOM05D006920 ORTHO05D005895 7.9e-29 133.3 915 28.6
Dinv42334 Davidia involucrata HOM05D006920 ORTHO05D005895 1.8e-28 132.1 590 31.2
DCAR_015050 Daucus carota HOM05D006920 ORTHO05D005895 1.9e-27 128.6 303 36.6
Sp6g18630 Schrenkiella parvula HOM05D010535 ORTHO05D005895 1.9e-27 128.6 716 27.4
Actinidia25244 Actinidia chinensis HOM05D006920 ORTHO05D005895 2.5e-27 128.3 899 27.8
COL.COLO4_18185 Corchorus olitorius HOM05D006920 ORTHO05D005895 4.3e-27 127.5 811 27.3
AT5G56930 Arabidopsis thaliana HOM05D010535 ORTHO05D005895 5.7e-27 127.1 580 28.3
FAN19G0513 Fragaria x ananassa HOM05D006920 ORTHO05D005895 5.7e-27 127.1 806 28.2
Duzib150G1610 Durio zibethinus HOM05D006920 ORTHO05D005895 9.6e-27 126.3 839 27.8
Gohir.D05G032000 Gossypium hirsutum HOM05D006920 ORTHO05D005895 1.6e-26 125.6 923 28.2
Oeu000320.3 Olea europaea HOM05D006920 ORTHO05D005895 2.8e-26 124.8 460 33.3
Ciclev10007413m.g Citrus clementina HOM05D006920 ORTHO05D005895 3.7e-26 124.4 861 29.2
Gohir.A05G030600 Gossypium hirsutum HOM05D006920 ORTHO05D005895 8.2e-26 123.2 844 28.8
CiPaw.03G213600 Carya illinoinensis HOM05D006920 ORTHO05D005895 3.1e-25 121.3 978 27.2
MSTRG.19500 Avicennia marina HOM05D006920 ORTHO05D005895 4.0e-25 120.9 714 28.7
FAN28G2753 Fragaria x ananassa HOM05D006920 ORTHO05D005895 4.0e-25 120.9 400 35.5
Nitab4.5_0008077g0010 Nicotiana tabacum HOM05D006920 ORTHO05D005895 5.3e-25 120.6 678 29.1
AL8G32790 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 9.0e-25 119.8 690 28.1
Carub.0008s1741 Capsella rubella HOM05D010535 ORTHO05D005895 3.4e-24 117.9 150 52.0
FAN23G0431 Fragaria x ananassa HOM05D006920 ORTHO05D005895 3.4e-24 117.9 628 32.3
BraA02t05956Z Brassica rapa HOM05D010535 ORTHO05D005895 7.6e-24 116.7 533 30.0
FAN26G1238 Fragaria x ananassa HOM05D006920 ORTHO05D005895 1.0e-23 116.3 454 35.5
Oeu064585.1 Olea europaea HOM05D006920 ORTHO05D005895 1.7e-23 115.5 599 32.1
Nn6g35509 Nelumbo nucifera HOM05D006920 ORTHO05D005895 2.2e-23 115.2 494 30.6
Nitab4.5_0005104g0050 Nicotiana tabacum HOM05D006920 ORTHO05D005895 2.2e-23 115.2 720 29.2
ECA233G4205 Erigeron canadensis HOM05D006920 ORTHO05D005895 2.9e-23 114.8 288 41.3
Hma1.2p1_0476F.1_g160830 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 3.8e-23 114.4 522 30.5
CARHR270670 Cardamine hirsuta HOM05D010535 ORTHO05D005895 8.4e-23 113.2 546 31.1
PGR142G4106 Punica granatum HOM05D006920 ORTHO05D005895 1.9e-22 112.1 896 26.5
SalBow6G1737 Salvia bowleyana HOM05D006920 ORTHO05D005895 1.9e-22 112.1 825 26.1
Migut.J00581 Erythranthe guttata HOM05D006920 ORTHO05D005895 2.5e-22 111.7 734 27.1
BcaB05g22299 Brassica carinata HOM05D010535 ORTHO05D005895 7.1e-22 110.2 374 30.7
A02p08870 Brassica napus HOM05D010535 ORTHO05D005895 9.3e-22 109.8 523 29.8
Rhsim05G0018400 Rhododendron simsii HOM05D006920 ORTHO05D005895 1.2e-21 109.4 120 60.8
TAR383G0297 Trochodendron aralioides HOM05D006920 ORTHO05D005895 1.2e-21 109.4 862 28.7
CAN.G610.81 Capsicum annuum HOM05D006920 ORTHO05D005895 1.6e-21 109.0 437 33.4
Sc08g0008560 Simmondsia chinensis HOM05D006920 ORTHO05D005895 2.7e-21 108.2 419 31.7
BcaC03g14196 Brassica carinata HOM05D010535 ORTHO05D005895 3.5e-21 107.8 542 28.6
C02p14780 Brassica napus HOM05D010535 ORTHO05D005895 3.5e-21 107.8 542 28.6
BolC2t07607H Brassica oleracea HOM05D010535 ORTHO05D005895 3.5e-21 107.8 542 28.6
MBI04_g34755_MAGBIO Magnolia biondii HOM05D006920 ORTHO05D005895 6.1e-21 107.1 401 33.4
Gohir.A10G064850 Gossypium hirsutum HOM05D006920 ORTHO05D005895 1.0e-20 106.3 311 34.7
FAN26G3372 Fragaria x ananassa HOM05D006920 ORTHO05D005895 3.9e-20 104.4 650 30.6
ClCG11G016050 Citrullus lanatus HOM05D006920 ORTHO05D005895 1.1e-19 102.8 420 36.2
Peaxi162Scf00028g00415 Petunia axillaris HOM05D006920 ORTHO05D005895 1.5e-19 102.4 584 27.7
Eucgr.C01704 Eucalyptus grandis HOM05D006920 ORTHO05D005895 5.7e-19 100.5 462 31.4
Thhalv10012834m.g Eutrema salsugineum HOM05D010535 ORTHO05D005895 5.7e-19 100.5 715 27.8
CDE04G1224 Ceratophyllum demersum HOM05D006920 ORTHO05D005895 1.3e-18 99.4 258 40.7
CsaV3_4G027920 Cucumis sativus L. HOM05D006920 ORTHO05D005895 2.2e-18 98.6 511 32.5
arahy.Tifrunner.gnm1.ann1.6V6YZC Arachis hypogaea HOM05D006920 ORTHO05D005895 6.3e-18 97.1 176 39.2
vmacro17256 Vaccinium macrocarpon HOM05D006920 ORTHO05D005895 8.2e-18 96.7 515 26.8
HanXRQChr10g0310341 Helianthus annuus HOM05D001214 ORTHO05D001029 1.4e-17 95.9 117 53.0
Hund06669 Selenicereus undatus HOM05D006920 ORTHO05D005895 1.4e-17 95.9 234 42.3
unitig_699.g19418 Utricularia gibba HOM05D006920 ORTHO05D005895 1.8e-17 95.5 444 32.0
MELO3C010521.2 Cucumis melo HOM05D006920 ORTHO05D005895 2.4e-17 95.1 481 29.9
HPP92_005499 Vanilla planifolia HOM05D006920 ORTHO05D005895 2.4e-17 95.1 685 27.2
ATR0178G033 Amborella trichopoda HOM05D006920 ORTHO05D005895 6.9e-17 93.6 109 45.9
PGSC0003DMG400014565 Solanum tuberosum HOM05D006920 ORTHO05D005895 9.0e-17 93.2 265 35.8
Sed0003269 Sechium edule HOM05D006920 ORTHO05D005895 1.2e-16 92.8 709 29.3
Aa31LG11G5930 Aethionema arabicum HOM05D010535 ORTHO05D005895 1.3e-15 89.4 234 34.6
Lj4A292T33 Lonicera japonica HOM05D006920 ORTHO05D005895 3.8e-15 87.8 522 29.9
EL10Ac8g19187 Beta vulgaris HOM05D036879 ORTHO05D005895 5.0e-15 87.4 173 52.0
PSO063G3291 Papaver somniferum HOM05D006920 ORTHO05D005895 8.5e-15 86.7 239 38.1
Glyma.08G320300 Glycine max HOM05D006920 ORTHO05D005895 1.4e-14 85.9 241 30.3
Aa31LG11G5970 Aethionema arabicum HOM05D010535 ORTHO05D005895 3.2e-14 84.7 417 26.9
Lj3g0018977 Lotus japonicus HOM05D006920 ORTHO05D005895 2.7e-13 81.6 147 38.8
PSO384G1468 Papaver somniferum HOM05D006920 ORTHO05D005895 4.6e-13 80.9 295 34.6
SEGI_28908 Sequoiadendron giganteum HOM05D006920 ORTHO05D005895 6.1e-13 80.5 191 39.8
PSO832G2112 Papaver somniferum HOM05D006920 ORTHO05D005895 7.9e-13 80.1 255 34.5
Sopen05g005130 Solanum pennellii HOM05D006920 ORTHO05D005895 7.9e-13 80.1 126 48.4
CDE06G2477 Ceratophyllum demersum HOM05D002968 ORTHO05D005895 5.1e-12 77.4 374 33.4
CSS0019085 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 1.1e-11 76.3 306 30.4
Aa31LG11G5940 Aethionema arabicum HOM05D010535 ORTHO05D005895 2.5e-11 75.1 463 23.3
Migut.J00579 Erythranthe guttata HOM05D006920 ORTHO05D005895 4.3e-11 74.3 114 50.9
HanXRQChr14g0436791 Helianthus annuus HOM05D006920 ORTHO05D005895 4.3e-11 74.3 56 57.1
ECA240G4801 Erigeron canadensis HOM05D006920 ORTHO05D005895 7.4e-11 73.6 69 55.1
Mapoly0131s0021 Marchantia polymorpha HOM05D006920 ORTHO05D005895 9.7e-11 73.2 176 35.2
Solyc05g009350.4 Solanum lycopersicum HOM05D006920 ORTHO05D005895 9.7e-11 73.2 453 28.9
HanXRQChr05g0128971 Helianthus annuus HOM05D006920 ORTHO05D005895 2.2e-10 72.0 294 36.7
HanXRQChr03g0060321 Helianthus annuus HOM05D006920 ORTHO05D005895 2.8e-10 71.6 305 36.7
Hma1.2p1_1540F.1_g289660 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 2.8e-10 71.6 96 53.1
Aqoxy7G02156 Aquilegia oxysepala HOM05D006920 ORTHO05D005895 6.3e-10 70.5 502 26.7
Glyma.02G244050 Glycine max HOM05D006920 ORTHO05D005895 6.3e-10 70.5 103 46.6
Ah.12g064230 Amaranthus hybridus HOM05D006920 ORTHO05D005895 1.8e-09 68.9 108 43.5
A10p14250 Brassica napus HOM05D010535 ORTHO05D005895 5.3e-09 67.4 57 57.9
BraA10t43516Z Brassica rapa HOM05D010535 ORTHO05D005895 5.3e-09 67.4 57 57.9
Pp3c19_22680 Physcomitrium patens HOM05D006920 ORTHO05D005895 9.1e-09 66.6 167 37.1
AUR62033943 Chenopodium quinoa HOM05D036879 ORTHO05D005895 1.5e-08 65.9 384 30.2
AagrBONN_evm.TU.Sc2ySwM_228.2245 Anthoceros agrestis HOM05D006920 ORTHO05D005895 4.5e-08 64.3 138 42.0
Hma1.2p1_3164F.1_g333530 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 5.9e-08 63.9 52 53.8
AL52U10020 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 2.9e-07 61.6 670 24.2


User provided reference genes

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