Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 4.9e-252 874.0 446 100.0
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 4.4e-237 824.3 412 99.0
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 2.4e-174 615.9 413 74.6
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 2.4e-174 615.9 411 72.7
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 3.8e-172 608.6 411 72.0
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 1.2e-170 603.6 406 74.1
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 1.2e-170 603.6 407 74.2
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 6.1e-170 601.3 414 73.7
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 1.4e-169 600.1 408 72.1
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 1.4e-169 600.1 408 72.1
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 1.8e-169 599.7 406 73.9
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 5.4e-150 535.0 338 77.2
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 1.3e-148 530.4 409 64.8
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 1.3e-148 530.4 387 66.4
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 5.0e-148 528.5 413 63.7
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 1.1e-147 527.3 410 63.9
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 1.5e-147 526.9 418 62.2
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 1.5e-147 526.9 413 63.4
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 1.6e-146 523.5 414 64.5
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 3.6e-146 522.3 410 63.2
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 3.6e-146 522.3 419 61.3
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 8.0e-146 521.2 408 64.0
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 1.4e-145 520.4 408 64.0
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 1.8e-145 520.0 412 62.6
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 3.1e-145 519.2 415 62.7
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 3.1e-145 519.2 409 63.6
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 3.1e-145 519.2 414 63.5
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 9.8e-144 514.2 412 65.0
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 1.7e-143 513.5 405 63.5
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 2.2e-143 513.1 410 64.1
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 8.3e-143 511.1 408 62.3
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 8.3e-143 511.1 404 62.9
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 1.4e-142 510.4 406 62.6
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 1.4e-142 510.4 383 67.1
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 1.4e-142 510.4 429 60.1
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 4.1e-142 508.8 407 61.9
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 5.4e-142 508.4 404 61.6
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 7.0e-142 508.1 411 62.8
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 9.2e-142 507.7 394 64.5
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 1.2e-141 507.3 407 61.2
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 1.2e-141 507.3 415 61.7
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 2.1e-141 506.5 406 61.1
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 2.1e-141 506.5 406 61.1
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 2.7e-141 506.1 404 61.6
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 3.5e-141 505.8 406 60.8
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 3.5e-141 505.8 406 60.8
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 4.6e-141 505.4 406 61.1
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 4.6e-141 505.4 406 60.6
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 1.3e-140 503.8 405 60.7
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 1.3e-140 503.8 396 62.4
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 1.7e-140 503.4 410 61.0
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 2.3e-140 503.1 406 61.1
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 2.3e-140 503.1 404 62.1
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 2.3e-140 503.1 433 59.6
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 3.9e-140 502.3 397 62.2
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 5.1e-140 501.9 405 63.7
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 5.1e-140 501.9 413 59.8
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 6.6e-140 501.5 410 61.7
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 6.6e-140 501.5 409 62.1
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 6.6e-140 501.5 415 61.4
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 8.6e-140 501.1 415 61.7
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.5e-139 500.4 401 61.6
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 1.9e-139 500.0 405 60.2
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 4.3e-139 498.8 418 59.1
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 5.6e-139 498.4 447 57.0
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 5.6e-139 498.4 405 60.0
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 5.6e-139 498.4 433 58.9
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 7.3e-139 498.0 405 60.7
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 9.5e-139 497.7 405 61.2
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 1.2e-138 497.3 408 61.3
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.2e-138 497.3 409 61.6
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 1.2e-138 497.3 409 61.6
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 1.2e-138 497.3 405 62.0
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 1.6e-138 496.9 409 61.6
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 1.6e-138 496.9 405 61.0
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 3.6e-138 495.7 393 63.6
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 3.6e-138 495.7 409 61.4
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 6.2e-138 495.0 412 60.0
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 1.1e-137 494.2 409 61.1
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 1.4e-137 493.8 404 60.9
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 1.8e-137 493.4 412 59.7
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 2.3e-137 493.0 378 63.5
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 3.1e-137 492.7 406 61.6
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 3.1e-137 492.7 406 61.3
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 4.0e-137 492.3 401 61.3
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 5.2e-137 491.9 408 61.5
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 5.2e-137 491.9 401 62.1
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 8.9e-137 491.1 406 60.1
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 2.6e-136 489.6 434 56.7
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 7.5e-136 488.0 445 57.3
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 7.5e-136 488.0 403 60.5
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 3.7e-135 485.7 406 59.9
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 1.1e-134 484.2 414 58.7
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 7.1e-134 481.5 345 68.1
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 2.7e-133 479.6 409 59.2
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 7.8e-133 478.0 435 57.0
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 1.0e-132 477.6 407 58.7
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 1.3e-132 477.2 351 67.0
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 3.0e-132 476.1 363 62.8
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 3.9e-132 475.7 474 54.2
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 5.6e-131 471.9 394 60.4
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 7.3e-131 471.5 349 67.0
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 3.6e-130 469.2 402 58.7
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 1.4e-129 467.2 337 67.7
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.4e-129 466.5 367 63.2
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 3.1e-129 466.1 341 66.3
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 4.0e-129 465.7 354 63.8
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 5.2e-129 465.3 417 56.8
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 9.9e-128 461.1 384 59.1
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 1.3e-127 460.7 370 62.7
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 3.8e-127 459.1 341 65.7
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.4e-126 457.2 377 59.4
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 2.4e-126 456.4 419 56.1
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 5.4e-126 455.3 421 55.8
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 9.2e-126 454.5 369 62.3
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 3.0e-124 449.5 406 54.4
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 1.9e-123 446.8 409 57.9
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 4.3e-123 445.7 349 62.5
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 9.6e-123 444.5 411 56.0
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 2.4e-121 439.9 413 54.0
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 4.4e-120 435.6 347 62.8
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 4.9e-119 432.2 412 53.4
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 1.5e-115 420.6 294 68.7
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 1.5e-115 420.6 451 49.9
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 9.3e-110 401.4 309 62.1
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 2.6e-104 383.3 291 64.9
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 1.1e-102 377.9 387 46.5
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 8.4e-95 351.7 314 54.1
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 7.4e-91 338.6 303 51.8
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 1.2e-88 331.3 328 50.9
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 2.6e-88 330.1 356 47.2
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 6.9e-81 305.4 195 72.8
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 3.8e-79 299.7 292 53.1
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 4.7e-77 292.7 271 53.1
QL05p052295 Quercus lobata HOM05D002306 ORTHO05D005773 4.5e-72 276.2 220 60.9
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 1.5e-70 271.2 298 49.0
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 1.4e-68 264.6 252 54.8
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.8e-65 254.2 351 42.7
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 4.7e-45 186.4 282 39.4
Ciclev10023844m.g Citrus clementina HOM05D002306 ORTHO05D005773 5.4e-41 172.9 190 52.6
Lsat_1_v5_gn_7_80100 Lactuca sativa HOM05D002306 ORTHO05D005773 3.5e-40 170.2 133 57.9
CDE03G0512 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 3.9e-39 166.8 182 47.3
Cre02.g077451 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 2.1e-37 161.0 310 32.9
PRCOL_00002303 Prasinoderma coloniale HOM05D002306 ORTHO05D005773 4.3e-30 136.7 303 32.7
COL.COLO4_16789 Corchorus olitorius HOM05D002476 ORTHO05D002652 4.7e-29 133.3 118 61.0
Lj3C903G5 Lonicera japonica HOM05D002306 ORTHO05D005773 5.8e-27 126.3 114 56.1
TPR.G40491 Trifolium pratense HOM05D002306 ORTHO05D005773 2.4e-25 120.9 61 91.8
CDE03G0170 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 3.0e-23 114.0 81 67.9
SEGI_37240 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 1.9e-22 111.3 59 83.1
Medtr5g071310 Medicago truncatula HOM05D000009 ORTHO05D000008 2.6e-19 100.9 120 46.7
Actinidia03176 Actinidia chinensis HOM05D002306 ORTHO05D005773 5.8e-19 99.8 79 58.2
Lsat_1_v5_gn_5_184380 Lactuca sativa HOM05D000942 ORTHO05D014303 1.2e-16 92.0 60 70.0
SEGI_13792 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 6.6e-15 86.3 70 54.3
SEGI_09966 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 1.1e-14 85.5 141 35.5
Oeu053931.1 Olea europaea HOM05D002306 ORTHO05D005773 1.2e-13 82.0 68 55.9
Medtr5g070490 Medicago truncatula HOM05D000009 ORTHO05D000008 3.4e-11 73.9 96 45.8
TAR629G2756 Trochodendron aralioides HOM05D002306 ORTHO05D005773 7.6e-11 72.8 68 54.4
SEGI_03713 Sequoiadendron giganteum HOM05D002306 ORTHO05D036569 2.2e-10 71.2 50 62.0
Medtr5g070470 Medicago truncatula HOM05D000009 ORTHO05D000008 1.1e-09 68.9 111 41.4
Medtr5g071570 Medicago truncatula HOM05D000009 ORTHO05D000008 6.0e-08 63.2 70 52.9
Cpa.g.sc6.184 Carica papaya HOM05D000363 ORTHO05D000236 2.3e-07 61.2 132 31.1
AagrBONN_evm.TU.Sc2ySwM_362.2316 Anthoceros agrestis HOM05D000363 ORTHO05D000236 3.9e-07 60.5 159 30.2
Prupe.3G156800 Prunus persica HOM05D000363 ORTHO05D000236 3.9e-07 60.5 130 30.8
CDE08G0389 Ceratophyllum demersum HOM05D000363 ORTHO05D000236 6.6e-07 59.7 75 41.3
FvH4_1g12460 Fragaria vesca HOM05D000363 ORTHO05D000236 6.6e-07 59.7 115 34.8
FAN19G0327 Fragaria x ananassa HOM05D000363 ORTHO05D000236 6.6e-07 59.7 115 34.8
HanXRQChr01g0001081 Helianthus annuus HOM05D000363 ORTHO05D000236 6.6e-07 59.7 280 21.8
Lsat_1_v5_gn_7_88240 Lactuca sativa HOM05D000942 ORTHO05D014303 6.6e-07 59.7 120 35.8
MD15G1252000 Malus domestica HOM05D000363 ORTHO05D000236 6.6e-07 59.7 75 40.0
Medtr5g072260 Medicago truncatula HOM05D036032 ORTHO05D260814 6.6e-07 59.7 93 43.0
AagrBONN_evm.TU.Sc2ySwM_362.2317 Anthoceros agrestis HOM05D000363 ORTHO05D000236 1.1e-06 58.9 144 31.9
MD02G1138500 Malus domestica HOM05D000363 ORTHO05D000236 1.9e-06 58.2 75 40.0
Medtr5g072330 Medicago truncatula HOM05D036032 ORTHO05D005773 1.9e-06 58.2 51 60.8
RcHm_v2.0_Chr2g0100321 Rosa chinensis HOM05D000363 ORTHO05D000236 1.9e-06 58.2 317 24.0
SMO201G0237 Selaginella moellendorffii HOM05D000363 ORTHO05D000236 1.9e-06 58.2 133 30.8
FAN23G1427 Fragaria x ananassa HOM05D000363 ORTHO05D000236 3.3e-06 57.4 115 33.9
Prupe.7G162300 Prunus persica HOM05D000363 ORTHO05D000236 3.3e-06 57.4 76 38.2
Prupe.7G162400 Prunus persica HOM05D000363 ORTHO05D000236 5.6e-06 56.6 75 38.7
Potri.013G134900 Populus trichocarpa HOM05D000363 ORTHO05D000236 7.3e-06 56.2 131 30.5
QL11p045365 Quercus lobata HOM05D000363 ORTHO05D000236 9.6e-06 55.8 74 43.2
GSVIVG01018184001 Vitis vinifera HOM05D000363 ORTHO05D000236 9.6e-06 55.8 131 33.6


User provided reference genes

Program Settings