Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 2.4e-95 352.1 166 100.0
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 7.7e-94 347.1 166 98.8
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 6.4e-72 274.2 166 77.7
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 9.2e-71 270.4 166 75.3
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 1.7e-69 266.2 166 74.7
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 5.1e-69 264.6 163 78.5
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 1.1e-68 263.5 166 75.3
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 2.3e-66 255.8 164 74.4
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 3.7e-64 248.4 166 72.3
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 6.4e-64 247.7 166 73.5
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 1.7e-61 239.6 166 70.5
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 3.9e-61 238.4 169 68.6
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 8.6e-61 237.3 167 68.9
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 1.5e-60 236.5 197 62.4
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 5.6e-60 234.6 167 69.5
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 5.6e-60 234.6 167 67.1
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 1.2e-59 233.4 167 68.3
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 1.6e-59 233.0 166 69.9
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 2.1e-59 232.6 166 68.7
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 3.4e-57 225.3 163 65.6
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 5.8e-57 224.6 167 67.7
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 1.7e-56 223.0 164 66.5
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 2.2e-56 222.6 167 64.7
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 2.9e-56 222.2 166 68.7
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 1.4e-55 219.9 168 66.7
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 2.4e-55 219.2 166 63.3
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 4.6e-54 214.9 166 63.9
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 7.8e-54 214.2 133 77.4
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 3.0e-53 212.2 166 63.3
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 6.6e-53 211.1 166 63.9
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 8.7e-53 210.7 168 63.7
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 1.1e-52 210.3 166 63.9
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 5.6e-52 208.0 169 61.5
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 9.6e-52 207.2 163 62.6
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 2.1e-51 206.1 163 61.3
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 2.1e-51 206.1 141 69.5
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 3.6e-51 205.3 163 60.1
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 3.6e-51 205.3 166 62.0
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 4.8e-51 204.9 166 62.7
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 6.2e-51 204.5 163 61.3
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 8.1e-51 204.1 167 61.1
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 1.4e-50 203.4 168 63.1
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 1.8e-50 203.0 167 62.3
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 3.1e-50 202.2 168 61.3
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 3.1e-50 202.2 168 61.3
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 3.1e-50 202.2 164 61.6
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 4.0e-50 201.8 168 61.3
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 5.3e-50 201.4 163 60.7
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 5.3e-50 201.4 163 60.1
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 9.0e-50 200.7 163 60.7
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 1.5e-49 199.9 138 72.5
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 2.6e-49 199.1 160 62.5
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 2.9e-48 195.7 165 57.6
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 8.4e-48 194.1 163 60.1
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 3.2e-47 192.2 135 68.9
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 9.3e-47 190.7 166 60.2
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 4.6e-46 188.3 190 54.2
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 3.0e-45 185.7 135 65.2
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 1.6e-43 179.9 176 50.6
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 2.8e-43 179.1 158 58.9
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 3.6e-43 178.7 137 62.8
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 6.2e-43 177.9 161 53.4
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 3.1e-42 175.6 169 53.8
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 4.0e-42 175.3 133 67.7
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 2.6e-41 172.6 165 52.1
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 1.8e-37 159.8 137 59.9
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 2.3e-37 159.5 139 60.4
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 8.7e-37 157.5 138 58.7
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 1.3e-35 153.7 163 49.7
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 1.4e-34 150.2 130 59.2
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 2.2e-32 142.9 80 76.2
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 3.5e-30 135.6 166 45.2
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 6.0e-30 134.8 94 60.6
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 7.4e-28 127.9 110 54.5
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 1.3e-24 117.1 126 49.2
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 1.3e-24 117.1 169 36.7
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 2.2e-24 116.3 80 61.2
AagrBONN_evm.TU.Sc2ySwM_117.1515 Anthoceros agrestis HOM05D008044 ORTHO05D010106 2.1e-22 109.8 187 35.3
Nn1g00365 Nelumbo nucifera HOM05D008044 ORTHO05D010106 4.1e-18 95.5 86 61.6
ECA238G1983 Erigeron canadensis HOM05D008044 ORTHO05D010106 5.0e-16 88.6 86 55.8
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 3.2e-07 59.3 111 34.2
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 5.5e-07 58.5 93 36.6


User provided reference genes

Program Settings