Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.43NIZQ Arachis hypogaea HOM05D002183 ORTHO05D002169 1.4e-87 326.2 161 100.0
arahy.Tifrunner.gnm1.ann1.FN6QZN Arachis hypogaea HOM05D002183 ORTHO05D002169 2.8e-48 195.7 100 95.0
arahy.Tifrunner.gnm1.ann1.QE05K9 Arachis hypogaea HOM05D002183 ORTHO05D002169 1.8e-47 193.0 100 95.0
arahy.Tifrunner.gnm1.ann1.96L2JF Arachis hypogaea HOM05D000367 ORTHO05D016551 1.3e-45 186.8 109 83.5
arahy.Tifrunner.gnm1.ann1.JKN2LU Arachis hypogaea HOM05D000367 ORTHO05D002169 1.9e-33 146.4 122 63.1
Medtr1g022485 Medicago truncatula HOM05D002183 ORTHO05D002169 2.2e-24 116.3 96 59.4
Glyma.14G071700 Glycine max HOM05D002183 ORTHO05D002169 3.7e-24 115.5 98 62.2
Lalb_Chr22g0354611 Lupinus albus HOM05D002183 ORTHO05D002169 4.1e-23 112.1 103 59.2
TPR.G14413 Trifolium pratense HOM05D002183 ORTHO05D002169 9.1e-23 110.9 104 58.7
arahy.Tifrunner.gnm1.ann1.C9WYXW Arachis hypogaea HOM05D002183 ORTHO05D002169 3.4e-22 109.0 109 56.0
arahy.Tifrunner.gnm1.ann1.3FQ6RN Arachis hypogaea HOM05D002183 ORTHO05D002169 4.5e-22 108.6 109 56.0
Phvul.001G012000 Phaseolus vulgaris HOM05D002183 ORTHO05D002169 1.1e-20 104.0 98 56.1
Lalb_Chr14g0369461 Lupinus albus HOM05D002183 ORTHO05D002169 2.5e-20 102.8 103 56.3
COL.COLO4_26255 Corchorus olitorius HOM05D002183 ORTHO05D002169 7.2e-20 101.3 101 51.5
Lj1g0001454 Lotus japonicus HOM05D002183 ORTHO05D002169 1.6e-19 100.1 105 61.0
QL02p009441 Quercus lobata HOM05D002183 ORTHO05D002169 2.1e-19 99.8 101 51.5
TPR.G12441 Trifolium pratense HOM05D002183 ORTHO05D002169 6.1e-19 98.2 90 58.9
Lalb_Chr08g0245941 Lupinus albus HOM05D002183 ORTHO05D002169 1.0e-18 97.4 96 58.3
CSS0012198 Camellia sinensis var. sinensis HOM05D002183 ORTHO05D002169 1.4e-18 97.1 101 52.5
CiPaw.07G158000 Carya illinoinensis HOM05D002183 ORTHO05D002169 1.4e-18 97.1 104 52.9
Cfa013865 Carpinus fangiana HOM05D002765 ORTHO05D003083 3.0e-18 95.9 104 51.9
Sabra02G0026400 Salix brachista HOM05D002183 ORTHO05D002169 3.0e-18 95.9 101 53.5
Duzib041G0698 Durio zibethinus HOM05D002183 ORTHO05D002169 5.1e-18 95.1 101 50.5
arahy.Tifrunner.gnm1.ann1.X806TD Arachis hypogaea HOM05D000367 ORTHO05D002169 8.8e-18 94.4 76 67.1
Haze_22542 Corylus avellana HOM05D002183 ORTHO05D002169 8.8e-18 94.4 104 51.0
Potri.002G032500 Populus trichocarpa HOM05D002183 ORTHO05D002169 8.8e-18 94.4 98 51.0
CiPaw.08G060000 Carya illinoinensis HOM05D002183 ORTHO05D002169 1.1e-17 94.0 102 51.0
arahy.Tifrunner.gnm1.ann1.F2PUMD Arachis hypogaea HOM05D000367 ORTHO05D002169 3.3e-17 92.4 76 65.8
FAN15G1175 Fragaria x ananassa HOM05D002183 ORTHO05D002169 3.3e-17 92.4 99 51.5
FAN20G2224 Fragaria x ananassa HOM05D002183 ORTHO05D002169 3.3e-17 92.4 99 51.5
Lalb_Chr11g0062241 Lupinus albus HOM05D002183 ORTHO05D002169 3.3e-17 92.4 84 63.1
VMungo0647G0416 Vigna mungo HOM05D002183 ORTHO05D002169 4.4e-17 92.0 98 56.1
FAN27G3278 Fragaria x ananassa HOM05D000394 ORTHO05D000299 7.4e-17 91.3 99 51.5
RcHm_v2.0_Chr6g0301571 Rosa chinensis HOM05D002183 ORTHO05D002169 7.4e-17 91.3 104 51.9
Dinv39450 Davidia involucrata HOM05D002183 ORTHO05D002169 9.7e-17 90.9 101 52.5
Thecc.08G032300 Theobroma cacao HOM05D002183 ORTHO05D002169 1.7e-16 90.1 100 49.0
Medtr3g112160 Medicago truncatula HOM05D002183 ORTHO05D002169 2.8e-16 89.4 89 53.9
GSVIVG01009760001 Vitis vinifera HOM05D002183 ORTHO05D002169 3.7e-16 89.0 99 51.5
Atru.chr13.419 Acer truncatum HOM05D002183 ORTHO05D002169 6.3e-16 88.2 100 52.0
FvH4_2g39410 Fragaria vesca HOM05D002183 ORTHO05D002169 6.3e-16 88.2 99 49.5
Actinidia22519 Actinidia chinensis HOM05D002183 ORTHO05D002169 8.2e-16 87.8 96 52.1
CANSAT25G2082 Cannabis sativa HOM05D002183 ORTHO05D002169 1.4e-15 87.0 105 48.6
Thhalv10018837m.g Eutrema salsugineum HOM05D002183 ORTHO05D002169 1.8e-15 86.7 100 44.0
Psat5g016240 Pisum sativum HOM05D002183 ORTHO05D002169 2.4e-15 86.3 90 57.8
CSS0024303 Camellia sinensis var. sinensis HOM05D002183 ORTHO05D002169 3.1e-15 85.9 103 50.5
Eucgr.F01596 Eucalyptus grandis HOM05D002183 ORTHO05D002169 4.1e-15 85.5 102 49.0
Gohir.D05G194800 Gossypium hirsutum HOM05D002183 ORTHO05D002169 4.1e-15 85.5 122 42.6
Gohir.D02G095600 Gossypium hirsutum HOM05D002183 ORTHO05D002169 5.3e-15 85.1 101 47.5
Gorai.005G109300 Gossypium raimondii HOM05D002183 ORTHO05D002169 5.3e-15 85.1 101 47.5
MD15G1023200 Malus domestica HOM05D002183 ORTHO05D002169 5.3e-15 85.1 95 51.6
Gorai.009G199700 Gossypium raimondii HOM05D002183 ORTHO05D002169 9.1e-15 84.3 122 41.8
Nn1g04893 Nelumbo nucifera HOM05D002183 ORTHO05D002169 9.1e-15 84.3 96 50.0
Gohir.A03G079700 Gossypium hirsutum HOM05D002183 ORTHO05D002169 1.2e-14 84.0 101 46.5
Lj4A789G52 Lonicera japonica HOM05D002183 ORTHO05D002169 1.5e-14 83.6 97 51.5
Ciclev10001796m.g Citrus clementina HOM05D002183 ORTHO05D002169 2.0e-14 83.2 105 52.4
Oeu002821.2 Olea europaea HOM05D002183 ORTHO05D002169 2.0e-14 83.2 101 51.5
EL10Ac1g00630 Beta vulgaris HOM05D002183 ORTHO05D002169 2.6e-14 82.8 104 50.0
TAR628G0384 Trochodendron aralioides HOM05D002183 ORTHO05D002169 2.6e-14 82.8 102 50.0
ECA247G3675 Erigeron canadensis HOM05D002183 ORTHO05D002169 3.4e-14 82.4 99 47.5
Oeu052973.1 Olea europaea HOM05D002183 ORTHO05D002169 3.4e-14 82.4 97 47.4
Sp5g30520 Schrenkiella parvula HOM05D002183 ORTHO05D002169 3.4e-14 82.4 100 43.0
PGR083G2726 Punica granatum HOM05D002183 ORTHO05D002169 4.5e-14 82.0 104 49.0
MSTRG.22311 Avicennia marina HOM05D002183 ORTHO05D002169 5.9e-14 81.6 96 49.0
Gohir.A05G191501 Gossypium hirsutum HOM05D002183 ORTHO05D002169 1.0e-13 80.9 98 45.9
MBI16_g07879_MAGBIO Magnolia biondii HOM05D002183 ORTHO05D002169 1.3e-13 80.5 106 45.3
Nn5g29694 Nelumbo nucifera HOM05D002183 ORTHO05D002169 1.3e-13 80.5 98 49.0
MELO3C003799.2 Cucumis melo HOM05D002183 ORTHO05D002169 1.7e-13 80.1 103 49.5
Gohir.D06G003700 Gossypium hirsutum HOM05D002183 ORTHO05D002169 2.2e-13 79.7 99 44.4
Lj5g0023942 Lotus japonicus HOM05D002183 ORTHO05D002169 2.2e-13 79.7 103 50.5
Gorai.010G008300 Gossypium raimondii HOM05D002183 ORTHO05D002169 2.9e-13 79.3 99 44.4
Oeu047765.2 Olea europaea HOM05D002183 ORTHO05D002169 5.0e-13 78.6 102 52.9
PSO675G1183 Papaver somniferum HOM05D002183 ORTHO05D002169 5.0e-13 78.6 102 47.1
Sabra05G0178100 Salix brachista HOM05D002183 ORTHO05D002169 5.0e-13 78.6 104 49.0
Gohir.A06G008000 Gossypium hirsutum HOM05D002183 ORTHO05D002169 6.5e-13 78.2 99 43.4
vmacro21676 Vaccinium macrocarpon HOM05D002183 ORTHO05D002169 6.5e-13 78.2 101 44.6
Dinv36114 Davidia involucrata HOM05D002183 ORTHO05D002169 8.5e-13 77.8 102 47.1
Ah.05g176900 Amaranthus hybridus HOM05D002183 ORTHO05D002169 1.1e-12 77.4 104 48.1
Potri.005G230600 Populus trichocarpa HOM05D002183 ORTHO05D002169 1.1e-12 77.4 104 49.0
Sed0028215 Sechium edule HOM05D002183 ORTHO05D002169 1.1e-12 77.4 105 49.5
TWI12G1188 Tripterygium wilfordii HOM05D002183 ORTHO05D002169 1.1e-12 77.4 99 45.5
AT1G19660 Arabidopsis thaliana HOM05D002183 ORTHO05D002169 1.4e-12 77.0 102 41.2
AUR62014491 Chenopodium quinoa HOM05D002183 ORTHO05D002169 1.9e-12 76.6 104 48.1
DCAR_017526 Daucus carota HOM05D002183 ORTHO05D002169 1.9e-12 76.6 98 46.9
AT1G75380 Arabidopsis thaliana HOM05D002183 ORTHO05D002169 2.5e-12 76.3 96 45.8
AUR62038047 Chenopodium quinoa HOM05D002183 ORTHO05D002169 2.5e-12 76.3 104 48.1
TWI56G1271 Tripterygium wilfordii HOM05D002183 ORTHO05D002169 2.5e-12 76.3 98 46.9
Duzib116G0119 Durio zibethinus HOM05D002183 ORTHO05D002169 3.2e-12 75.9 99 43.4
CsaV3_3G045430 Cucumis sativus L. HOM05D002183 ORTHO05D002169 4.2e-12 75.5 103 46.6
Nitab4.5_0015312g0010 Nicotiana tabacum HOM05D002183 ORTHO05D002169 5.5e-12 75.1 96 45.8
Nitab4.5_0001091g0010 Nicotiana tabacum HOM05D002183 ORTHO05D002169 7.2e-12 74.7 96 45.8
PSO541G0160 Papaver somniferum HOM05D002183 ORTHO05D002169 7.2e-12 74.7 102 46.1
AL1G32380 Arabidopsis lyrata HOM05D002183 ORTHO05D002169 9.4e-12 74.3 102 42.2
Sed0007935 Sechium edule HOM05D002183 ORTHO05D002169 9.4e-12 74.3 104 47.1
PGSC0003DMG400015464 Solanum tuberosum HOM05D002183 ORTHO05D002169 9.4e-12 74.3 96 49.0
C05p18100 Brassica napus HOM05D000394 ORTHO05D000299 1.2e-11 73.9 102 42.2
BolC5t30518H Brassica oleracea HOM05D000394 ORTHO05D000299 1.2e-11 73.9 102 42.2
Carub.0001s1920 Capsella rubella HOM05D002183 ORTHO05D002169 1.2e-11 73.9 104 44.2
TAR376G0858 Trochodendron aralioides HOM05D002183 ORTHO05D002169 1.2e-11 73.9 102 47.1
Cpa.g.sc99.33 Carica papaya HOM05D002183 ORTHO05D002169 2.1e-11 73.2 101 41.6
Cc10_g02510 Coffea canephora HOM05D002183 ORTHO05D002169 4.7e-11 72.0 99 44.4
CAN.G710.10 Capsicum annuum HOM05D002183 ORTHO05D002169 6.1e-11 71.6 107 42.1
Rhsim06G0029100 Rhododendron simsii HOM05D002183 ORTHO05D002169 6.1e-11 71.6 101 43.6
Aa31LG4G5590 Aethionema arabicum HOM05D002183 ORTHO05D002169 8.0e-11 71.2 98 44.9
Lsat_1_v5_gn_5_27120 Lactuca sativa HOM05D002183 ORTHO05D002169 8.0e-11 71.2 97 49.5
AL2G35310 Arabidopsis lyrata HOM05D002183 ORTHO05D002169 1.0e-10 70.9 96 45.8
BraA06t24689Z Brassica rapa HOM05D002183 ORTHO05D002169 1.0e-10 70.9 102 41.2
Sopen04g034290 Solanum pennellii HOM05D002183 ORTHO05D002169 1.0e-10 70.9 101 40.6
SGA_v2.0_scaffold11G05839 Striga asiatica HOM05D002183 ORTHO05D002169 1.0e-10 70.9 98 43.9
Manes.18G020500 Manihot esculenta HOM05D002183 ORTHO05D002169 1.8e-10 70.1 98 43.9
Peaxi162Scf00064g00535 Petunia axillaris HOM05D002183 ORTHO05D002169 1.8e-10 70.1 96 42.7
THA.LOC104809241 Tarenaya hassleriana HOM05D002183 ORTHO05D002169 1.8e-10 70.1 97 46.4
BcaB07g31969 Brassica carinata HOM05D002183 ORTHO05D002169 2.3e-10 69.7 98 41.8
A02p19890 Brassica napus HOM05D002183 ORTHO05D002169 2.3e-10 69.7 103 37.9
Duzib093G1417 Durio zibethinus HOM05D000394 ORTHO05D000299 2.3e-10 69.7 101 42.6
Solyc04g080700.4 Solanum lycopersicum HOM05D002183 ORTHO05D002169 2.3e-10 69.7 101 39.6
Sopen12g031100 Solanum pennellii HOM05D002183 ORTHO05D002169 2.3e-10 69.7 97 47.4
Sc15g0007100 Simmondsia chinensis HOM05D002183 ORTHO05D002169 3.0e-10 69.3 97 40.2
PGSC0003DMG402003745 Solanum tuberosum HOM05D002183 ORTHO05D002169 3.0e-10 69.3 101 40.6
Carub.0002s2222 Capsella rubella HOM05D002183 ORTHO05D002169 3.9e-10 68.9 96 43.8
SalBow7G3426 Salvia bowleyana HOM05D002183 ORTHO05D002169 3.9e-10 68.9 99 41.4
SalBow8G2835 Salvia bowleyana HOM05D002183 ORTHO05D002169 3.9e-10 68.9 97 48.5
SalBow8G5417 Salvia bowleyana HOM05D002183 ORTHO05D002169 3.9e-10 68.9 97 48.5
ATR0585G127 Amborella trichopoda HOM05D002183 ORTHO05D002169 6.7e-10 68.2 99 41.4
BcaC03g15563 Brassica carinata HOM05D002183 ORTHO05D002169 6.7e-10 68.2 96 37.5
C02p32510 Brassica napus HOM05D002183 ORTHO05D002169 6.7e-10 68.2 96 37.5
BolC2t09282H Brassica oleracea HOM05D002183 ORTHO05D002169 6.7e-10 68.2 96 37.5
Hund26902 Selenicereus undatus HOM05D002183 ORTHO05D002169 6.7e-10 68.2 97 39.2
SGA_v2.0_scaffold162G37880 Striga asiatica HOM05D002183 ORTHO05D002169 6.7e-10 68.2 101 41.6
unitig_8.g4929 Utricularia gibba HOM05D002183 ORTHO05D002169 6.7e-10 68.2 104 39.4
Solyc12g089220.3 Solanum lycopersicum HOM05D002183 ORTHO05D002169 1.5e-09 67.0 97 46.4
BraA02t07022Z Brassica rapa HOM05D002183 ORTHO05D002169 2.6e-09 66.2 96 37.5
CAN.G847.4 Capsicum annuum HOM05D002183 ORTHO05D002169 2.6e-09 66.2 96 41.7
CARHR068740 Cardamine hirsuta HOM05D002183 ORTHO05D002169 2.6e-09 66.2 96 44.8
A06p15790 Brassica napus HOM05D000394 ORTHO05D000299 4.4e-09 65.5 102 40.2
TAR625G0195 Trochodendron aralioides HOM05D002183 ORTHO05D002169 5.7e-09 65.1 99 40.4
CARHR020180 Cardamine hirsuta HOM05D002183 ORTHO05D002169 1.3e-08 63.9 101 41.6
Migut.C00759 Erythranthe guttata HOM05D002183 ORTHO05D002169 1.3e-08 63.9 97 43.3
ECA246G2632 Erigeron canadensis HOM05D002183 ORTHO05D002169 2.2e-08 63.2 96 44.8
Thhalv10008268m.g Eutrema salsugineum HOM05D002183 ORTHO05D002169 2.2e-08 63.2 106 35.8
Hund17180 Selenicereus undatus HOM05D002183 ORTHO05D002169 2.2e-08 63.2 99 41.4
Rhsim07G0241700 Rhododendron simsii HOM05D002183 ORTHO05D002169 3.7e-08 62.4 101 46.5
RhsimUnG0236600 Rhododendron simsii HOM05D002183 ORTHO05D002169 3.7e-08 62.4 101 46.5
Sp1g17500 Schrenkiella parvula HOM05D002183 ORTHO05D002169 3.7e-08 62.4 98 37.8
AUR62029879 Chenopodium quinoa HOM05D002183 ORTHO05D002169 4.8e-08 62.0 90 43.3
Manes.05G155800 Manihot esculenta HOM05D002183 ORTHO05D002169 8.2e-08 61.2 98 39.8
Aa31LG7G4260 Aethionema arabicum HOM05D000394 ORTHO05D000299 1.1e-07 60.8 98 35.7
HanXRQChr05g0151711 Helianthus annuus HOM05D002183 ORTHO05D002169 1.4e-07 60.5 70 48.6
BcaB05g24903 Brassica carinata HOM05D002183 ORTHO05D002169 5.3e-07 58.5 101 36.6
Aqoxy5G01566 Aquilegia oxysepala HOM05D002183 ORTHO05D002169 7.0e-07 58.2 97 37.1
Aqoxy6G01176 Aquilegia oxysepala HOM05D002183 ORTHO05D002169 7.0e-07 58.2 97 39.2
MSTRG.25193 Avicennia marina HOM05D002183 ORTHO05D002169 7.0e-07 58.2 97 39.2
Nitab4.5_0003265g0010 Nicotiana tabacum HOM05D002183 ORTHO05D002169 1.2e-06 57.4 105 38.1
MSTRG.1257 Avicennia marina HOM05D002183 ORTHO05D002169 2.0e-06 56.6 97 42.3
AUR62025832 Chenopodium quinoa HOM05D002183 ORTHO05D002169 4.5e-06 55.5 90 38.9
CDE02G4297 Ceratophyllum demersum HOM05D002183 ORTHO05D002169 5.9e-06 55.1 96 34.4


User provided reference genes

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