Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 1.8e-99 365.9 189 100.0
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 4.5e-98 361.3 189 98.4
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 2.3e-86 322.4 191 88.5
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 2.9e-81 305.4 188 84.6
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 4.2e-80 301.6 189 84.1
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 5.2e-78 294.7 189 83.6
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 1.2e-77 293.5 189 82.5
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 9.8e-77 290.4 189 79.9
VMungo1215G2009 Vigna mungo HOM05D005762 ORTHO05D006823 2.9e-73 278.9 239 65.7
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 7.3e-72 274.2 190 76.3
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 3.6e-71 271.9 190 75.8
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 1.0e-70 270.4 190 75.3
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 1.2e-69 266.9 190 75.8
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 2.0e-69 266.2 191 77.0
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 2.6e-69 265.8 189 75.1
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 9.8e-69 263.8 190 73.2
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 1.3e-68 263.5 190 74.7
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 3.7e-68 261.9 188 72.9
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 6.4e-68 261.2 189 74.1
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 6.4e-68 261.2 189 74.1
Lj2g0017040 Lotus japonicus HOM05D005762 ORTHO05D006823 1.9e-67 259.6 177 79.7
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 3.2e-67 258.8 190 72.6
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 2.7e-66 255.8 188 72.9
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 3.5e-66 255.4 189 74.6
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 3.5e-66 255.4 191 73.8
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 6.0e-66 254.6 188 71.8
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 1.7e-65 253.1 189 71.4
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 1.7e-65 253.1 189 71.4
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 5.0e-65 251.5 192 70.8
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 8.6e-65 250.8 185 76.2
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 7.3e-64 247.7 195 68.2
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 9.5e-64 247.3 189 69.8
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 3.6e-63 245.4 188 72.3
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 4.7e-63 245.0 190 71.6
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 4.7e-63 245.0 188 71.8
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 8.0e-63 244.2 186 69.4
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 4.0e-62 241.9 187 71.7
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 2.0e-61 239.6 189 71.4
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 4.4e-61 238.4 193 68.4
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 7.5e-61 237.7 190 68.9
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 8.3e-60 234.2 192 68.8
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 8.3e-60 234.2 187 67.4
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 1.1e-59 233.8 193 69.9
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 1.1e-59 233.8 193 69.9
Haze_19144 Corylus avellana HOM05D005762 ORTHO05D006823 1.4e-59 233.4 188 67.6
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 1.4e-59 233.4 193 69.9
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 1.9e-59 233.0 193 69.9
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 7.0e-59 231.1 190 66.3
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 9.2e-59 230.7 189 69.3
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 2.7e-58 229.2 188 67.6
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 6.0e-58 228.0 193 65.8
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 2.3e-57 226.1 189 64.6
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 3.0e-57 225.7 180 68.9
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 5.1e-57 224.9 192 66.1
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 6.6e-57 224.6 184 70.1
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 1.1e-56 223.8 198 64.6
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 1.5e-56 223.4 191 63.9
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 1.9e-56 223.0 194 63.4
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 1.9e-56 223.0 189 66.7
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 2.5e-56 222.6 195 66.2
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 9.5e-56 220.7 189 62.4
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 1.2e-55 220.3 189 66.1
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 1.6e-55 219.9 193 65.3
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 3.6e-55 218.8 192 66.7
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 1.1e-54 217.2 195 64.6
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 2.3e-54 216.1 192 64.1
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 6.8e-54 214.5 187 64.7
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 1.2e-53 213.8 180 65.6
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 1.3e-52 210.3 194 63.9
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 2.9e-52 209.1 190 64.2
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 8.3e-52 207.6 183 63.9
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 8.3e-52 207.6 190 64.2
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 8.3e-52 207.6 194 62.4
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 1.4e-51 206.8 189 63.0
Sabra18G0088700 Salix brachista HOM05D000058 ORTHO05D000077 9.2e-51 204.1 168 64.9
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 1.2e-50 203.8 188 63.8
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 2.1e-50 203.0 190 58.9
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 2.7e-50 202.6 189 59.3
Cpa.g.sc199.22 Carica papaya HOM05D005762 ORTHO05D006823 2.7e-50 202.6 170 67.6
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 3.5e-50 202.2 187 59.4
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 1.3e-49 200.3 190 57.4
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 3.9e-49 198.7 185 59.5
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 2.5e-48 196.1 187 57.8
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 2.5e-48 196.1 187 57.8
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 4.3e-48 195.3 185 58.9
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 4.3e-48 195.3 182 58.8
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 1.2e-47 193.7 187 57.8
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 2.1e-47 193.0 196 55.6
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 2.1e-47 193.0 188 58.5
Dinv41344 Davidia involucrata HOM05D005762 ORTHO05D006823 4.7e-47 191.8 145 69.7
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 2.4e-46 189.5 195 60.0
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 3.1e-46 189.1 190 56.3
BcaNung02738 Brassica carinata HOM05D005762 ORTHO05D006823 7.6e-45 184.5 202 50.0
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 2.2e-44 183.0 178 59.0
Carub.0007s0975 Capsella rubella HOM05D005762 ORTHO05D006823 2.4e-43 179.5 187 55.6
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 9.2e-43 177.6 189 55.0
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 1.2e-42 177.2 170 58.8
Lj9A721G60 Lonicera japonica HOM05D005762 ORTHO05D006823 1.6e-42 176.8 148 66.9
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 2.7e-42 176.0 189 54.0
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 5.1e-41 171.8 191 53.4
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 1.9e-40 169.9 188 51.1
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 2.5e-40 169.5 191 52.9
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 8.1e-39 164.5 189 49.2
SHI02837 Sapria himalayana HOM05D005762 ORTHO05D006823 1.4e-38 163.7 186 53.2
SGA_v2.0_scaffold69G23111 Striga asiatica HOM05D005762 ORTHO05D006823 3.1e-38 162.5 215 50.2
A08p19060 Brassica napus HOM05D005762 ORTHO05D006823 2.2e-36 156.4 219 46.6
Sc18g0003110 Simmondsia chinensis HOM05D005762 ORTHO05D006823 2.9e-36 156.0 147 61.9
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 3.8e-36 155.6 189 47.6
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 3.8e-36 155.6 189 47.6
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 4.9e-36 155.2 189 50.3
BcaNung01558 Brassica carinata HOM05D005762 ORTHO05D006823 6.4e-36 154.8 208 45.2
Rhsim03G0259100 Rhododendron simsii HOM05D005762 ORTHO05D006823 5.4e-35 151.8 146 60.3
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 3.5e-34 149.1 189 47.6
Cfa020788 Carpinus fangiana HOM05D005762 ORTHO05D006823 4.6e-34 148.7 109 71.6
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 2.3e-33 146.4 189 46.0
THA.LOC104804493 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 8.7e-33 144.4 140 58.6
AL7G21310 Arabidopsis lyrata HOM05D005762 ORTHO05D006823 2.0e-29 133.3 146 52.7
Thhalv10026542m.g Eutrema salsugineum HOM05D005762 ORTHO05D006823 4.5e-29 132.1 146 52.7
BraA03t15075Z Brassica rapa HOM05D005762 ORTHO05D006823 3.8e-28 129.0 168 45.8
CBR_g45648 Chara braunii HOM05D005762 ORTHO05D006823 2.4e-27 126.3 196 43.4
Oeu026957.1 Olea europaea HOM05D005762 ORTHO05D006823 2.4e-27 126.3 118 62.7
vmacro13053 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 1.8e-25 120.2 81 80.2
AUR62025367 Chenopodium quinoa HOM05D005762 ORTHO05D006823 4.3e-24 115.5 78 75.6
AUR62028383 Chenopodium quinoa HOM05D005762 ORTHO05D006823 9.6e-24 114.4 78 74.4
EL10Ac8g18914 Beta vulgaris HOM05D005762 ORTHO05D006823 3.7e-23 112.5 72 77.8
BolC3t21157H Brassica oleracea HOM05D005762 ORTHO05D006823 3.1e-22 109.4 157 45.9
Dinv09756 Davidia involucrata HOM05D000667 ORTHO05D002614 1.5e-21 107.1 87 62.1
CsaV3_1G029180 Cucumis sativus L. HOM05D005762 ORTHO05D006823 2.0e-21 106.7 59 89.8
CBR_g3032 Chara braunii HOM05D005762 ORTHO05D006823 1.3e-20 104.0 81 63.0
SMO004G0001 Selaginella moellendorffii HOM05D028982 ORTHO05D006823 4.6e-18 95.5 102 52.9
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 6.0e-18 95.1 84 63.1
Nitab4.5_0008759g0010 Nicotiana tabacum HOM05D005762 ORTHO05D006823 3.0e-17 92.8 82 63.4
SGA_v2.0_scaffold63G21769 Striga asiatica HOM05D005762 ORTHO05D006823 3.9e-17 92.4 96 55.2
Rhsim01G0060600 Rhododendron simsii HOM05D005762 ORTHO05D006823 7.4e-16 88.2 121 52.1
PSO357G0231 Papaver somniferum HOM05D005762 ORTHO05D006823 9.0e-14 81.3 132 42.4
Oeu064081.1 Olea europaea HOM05D005762 ORTHO05D006823 3.4e-13 79.3 57 75.4
MCO02G015 Micromonas commoda HOM05D005762 ORTHO05D006823 2.9e-12 76.3 202 34.7
Cre16.g672753 Chlamydomonas reinhardtii HOM05D005762 ORTHO05D006823 4.9e-12 75.5 189 33.9
Aa31LG2G19570 Aethionema arabicum HOM05D005762 ORTHO05D006823 7.9e-10 68.2 91 48.4
MD02G1004700 Malus domestica HOM05D005762 ORTHO05D006823 1.6e-07 60.5 54 61.1
CiPaw.15G164900 Carya illinoinensis HOM05D005762 ORTHO05D006823 2.2e-07 60.1 89 44.9
SMO361G0607 Selaginella moellendorffii HOM05D028982 ORTHO05D378329 6.9e-06 55.1 42 64.3


User provided reference genes

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