Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 6.5e-111 404.1 201 100.0
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 2.3e-84 315.8 158 98.1
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 1.2e-56 223.8 110 97.3
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 2.9e-55 219.2 147 78.2
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 2.5e-54 216.1 125 84.8
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 2.5e-54 216.1 125 84.8
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 2.5e-54 216.1 125 84.8
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 2.5e-54 216.1 125 84.8
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 2.5e-54 216.1 125 84.8
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 2.5e-54 216.1 125 84.8
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 2.5e-54 216.1 125 84.8
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 6.1e-53 211.5 110 91.8
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 6.1e-53 211.5 110 91.8
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 6.1e-53 211.5 110 91.8
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 1.4e-52 210.3 110 91.8
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 6.8e-52 208.0 110 90.9
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 6.8e-52 208.0 110 90.9
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 6.8e-52 208.0 110 90.9
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 6.8e-52 208.0 110 90.9
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 6.8e-52 208.0 110 90.9
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 6.8e-52 208.0 110 90.9
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 6.8e-52 208.0 110 90.9
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 6.8e-52 208.0 110 90.9
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 6.8e-52 208.0 110 90.9
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 1.2e-51 207.2 110 91.8
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 1.2e-51 207.2 110 91.8
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 2.6e-51 206.1 110 90.0
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 2.6e-51 206.1 110 90.9
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 3.4e-51 205.7 110 90.0
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 7.5e-51 204.5 110 90.0
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 2.9e-50 202.6 110 89.1
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 2.0e-48 196.4 110 85.5
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.0e-47 194.1 111 86.5
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.0e-47 194.1 111 86.5
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 5.0e-47 191.8 113 84.1
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 6.6e-47 191.4 131 71.8
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 5.6e-46 188.3 112 86.6
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 5.6e-46 188.3 112 86.6
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 9.5e-46 187.6 112 85.7
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 1.6e-45 186.8 112 85.7
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 1.6e-45 186.8 112 85.7
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.8e-45 186.0 111 82.9
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.8e-45 186.0 111 82.9
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 6.2e-45 184.9 111 82.0
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 1.8e-44 183.3 112 83.0
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 1.5e-43 180.3 143 70.6
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 2.0e-43 179.9 112 82.1
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 2.0e-43 179.9 112 82.1
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 2.0e-43 179.9 112 82.1
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 9.8e-43 177.6 111 80.2
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 6.4e-42 174.9 112 80.4
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 6.4e-42 174.9 111 80.2
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 1.1e-41 174.1 110 79.1
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 2.4e-41 172.9 112 82.1
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 2.4e-41 172.9 112 82.1
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 2.4e-41 172.9 112 82.1
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 2.4e-41 172.9 112 82.1
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 3.0e-39 166.0 139 64.7
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.9e-38 163.3 112 80.4
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 4.3e-38 162.2 111 76.6
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 1.6e-37 160.2 111 75.7
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 4.7e-37 158.7 119 72.3
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 6.2e-37 158.3 110 79.1
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 6.8e-36 154.8 85 89.4
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 2.6e-35 152.9 85 87.1
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 7.5e-35 151.4 112 75.0
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 1.4e-33 147.1 111 72.1
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.6e-32 143.7 107 75.7
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 6.0e-32 141.7 99 75.8
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 7.8e-32 141.4 86 82.6
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 7.8e-32 141.4 112 68.8
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.1e-30 137.5 100 78.0
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 9.5e-30 134.4 99 75.8
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 6.2e-29 131.7 97 76.3
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 7.6e-27 124.8 86 80.2
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 1.3e-26 124.0 106 66.0
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 2.9e-26 122.9 110 62.7
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 2.0e-19 100.1 112 48.2
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 9.9e-19 97.8 59 84.7
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 6.4e-18 95.1 111 52.3
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 2.1e-16 90.1 135 43.7
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.1e-16 90.1 135 43.7
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 3.5e-16 89.4 111 50.5
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.0e-15 87.8 58 72.4
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.0e-15 87.8 143 43.4
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.7e-15 87.0 143 43.4
Nitab4.5_0024895g0040 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.9e-14 83.6 53 83.0
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.3e-13 80.9 44 88.6
ClCG02G008120 Citrullus lanatus HOM05D002864 ORTHO05D008485 2.8e-13 79.7 53 75.5
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 6.2e-13 78.6 44 86.4
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 1.4e-12 77.4 61 65.6
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.4e-12 76.6 66 68.2
Solyc11g043190.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 2.0e-11 73.6 49 73.5
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 4.5e-11 72.4 44 79.5
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.3e-10 70.9 44 77.3
CAN.G1439.9 Capsicum annuum HOM05D002864 ORTHO05D008485 4.9e-10 68.9 39 76.9
Solyc01g049950.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 3.5e-08 62.8 59 64.4
Nitab4.5_0000317g0150 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.3e-07 60.8 39 71.8
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 2.3e-07 60.1 157 32.5
MELO3C031088.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.3e-07 60.1 39 64.1
Pp3c2_23470 Physcomitrium patens HOM05D002864 ORTHO05D008485 7.4e-06 55.1 55 60.0


User provided reference genes

Program Settings