Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.2e-132 476.5 232 100.0
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.7e-126 456.1 232 94.0
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.2e-124 449.9 232 91.8
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 2.1e-81 306.2 231 63.6
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 2.1e-81 306.2 231 62.3
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 1.1e-80 303.9 231 63.2
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 5.8e-79 298.1 231 62.3
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 6.4e-78 294.7 231 62.3
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.6e-68 263.5 234 55.6
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.7e-67 260.0 231 55.0
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 3.3e-66 255.8 231 53.2
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 2.8e-65 252.7 231 52.8
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 3.6e-65 252.3 221 56.1
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.8e-64 250.0 231 51.1
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.2e-64 248.4 229 52.4
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 8.9e-64 247.7 232 50.9
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.2e-63 247.3 234 53.8
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 1.5e-63 246.9 231 53.2
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 2.6e-63 246.1 230 51.3
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 4.4e-63 245.4 231 51.5
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 7.6e-63 244.6 231 53.2
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 7.6e-63 244.6 235 51.1
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 9.9e-63 244.2 221 51.1
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 9.9e-63 244.2 235 52.3
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 9.9e-63 244.2 231 52.4
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.3e-62 243.8 231 51.5
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 1.3e-62 243.8 231 51.5
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 4.9e-62 241.9 231 51.1
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.1e-61 240.7 231 50.6
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 2.4e-61 239.6 213 52.6
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 4.1e-61 238.8 224 51.8
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 5.4e-61 238.4 238 50.0
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 5.4e-61 238.4 228 50.9
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 9.2e-61 237.7 229 48.9
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.2e-60 237.3 214 53.3
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.2e-60 237.3 228 50.4
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.6e-60 236.9 231 51.5
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 4.6e-60 235.3 214 52.8
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 4.6e-60 235.3 214 51.9
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 7.8e-60 234.6 226 47.8
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 7.8e-60 234.6 226 48.2
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 1.0e-59 234.2 231 48.9
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.3e-59 233.8 214 51.4
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 2.3e-59 233.0 228 49.6
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.0e-59 232.6 228 49.6
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 3.9e-59 232.3 228 49.1
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 5.1e-59 231.9 214 50.9
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 5.1e-59 231.9 214 50.9
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 5.6e-58 228.4 218 50.5
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 9.6e-58 227.6 233 47.2
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 2.8e-57 226.1 232 47.4
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 6.2e-57 224.9 222 51.4
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 8.1e-57 224.6 229 49.3
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.4e-56 223.8 223 48.0
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.4e-56 223.8 223 48.0
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 2.4e-56 223.0 229 48.5
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 4.0e-56 222.2 232 46.6
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 5.2e-56 221.9 227 47.6
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.5e-55 220.3 233 48.5
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.5e-55 220.3 238 46.6
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.5e-55 220.3 229 48.0
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 2.0e-55 219.9 227 47.6
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.0e-55 219.9 233 45.1
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 2.6e-55 219.5 201 50.2
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 4.4e-55 218.8 226 48.7
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.7e-54 216.9 231 45.5
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 4.9e-54 215.3 213 49.8
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 1.4e-53 213.8 214 50.0
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.4e-53 213.8 224 45.5
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 1.9e-53 213.4 231 45.5
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 5.4e-53 211.8 231 45.5
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 5.4e-53 211.8 228 48.2
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 7.1e-53 211.5 232 47.0
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 9.3e-53 211.1 229 45.4
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 2.7e-52 209.5 227 48.0
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.7e-51 206.8 201 49.8
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.0e-51 206.1 229 44.5
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.0e-51 206.1 229 44.5
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 5.1e-51 205.3 229 44.5
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 6.6e-51 204.9 230 44.8
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-50 204.1 229 44.1
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.5e-50 203.8 215 46.0
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 1.9e-50 203.4 217 46.1
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 3.3e-50 202.6 215 49.8
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 5.6e-50 201.8 222 44.6
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 9.6e-50 201.1 221 46.2
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 1.6e-49 200.3 203 50.7
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 2.1e-49 199.9 235 44.7
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 4.8e-49 198.7 229 45.0
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 4.8e-49 198.7 216 47.7
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 8.1e-49 198.0 231 41.6
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 5.3e-48 195.3 219 46.6
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 6.9e-48 194.9 198 50.0
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 3.4e-47 192.6 231 43.3
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 3.4e-47 192.6 217 48.4
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 5.8e-47 191.8 232 40.5
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 7.6e-47 191.4 229 45.4
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 9.9e-47 191.0 200 46.5
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 9.9e-47 191.0 225 44.4
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 9.9e-47 191.0 229 43.2
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 2.2e-46 189.9 200 46.0
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 2.2e-46 189.9 224 43.3
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 2.2e-46 189.9 195 49.2
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 2.2e-46 189.9 229 42.8
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 2.9e-46 189.5 234 44.9
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 1.1e-45 187.6 236 41.1
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 2.4e-45 186.4 229 42.4
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.2e-45 186.0 190 48.4
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 5.4e-45 185.3 216 43.1
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 1.6e-44 183.7 231 43.7
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 2.1e-44 183.3 236 41.9
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 7.9e-44 181.4 236 40.3
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 3.0e-43 179.5 233 39.5
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 6.7e-43 178.3 230 39.1
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 1.9e-42 176.8 232 41.8
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.9e-42 176.8 235 38.7
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 2.5e-42 176.4 152 51.3
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 5.6e-42 175.3 236 40.3
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 7.4e-42 174.9 235 38.3
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 9.6e-42 174.5 235 38.3
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 9.6e-42 174.5 235 38.3
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 9.6e-42 174.5 236 39.0
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 1.3e-41 174.1 235 37.9
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 1.3e-41 174.1 235 37.9
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 2.1e-41 173.3 237 41.4
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 3.1e-40 169.5 228 38.2
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 4.0e-40 169.1 179 46.9
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 5.3e-40 168.7 167 48.5
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 2.6e-39 166.4 210 39.0
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 5.8e-39 165.2 155 51.6
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 9.9e-39 164.5 167 47.3
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.3e-38 164.1 155 48.4
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 2.9e-38 162.9 231 40.3
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 6.4e-38 161.8 210 38.6
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.9e-37 160.2 230 38.3
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 2.4e-37 159.8 224 39.7
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 7.1e-37 158.3 225 38.2
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 9.3e-37 157.9 164 46.3
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 2.1e-36 156.8 227 39.2
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 6.7e-35 151.8 224 37.9
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 6.7e-35 151.8 224 38.4
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.1e-34 151.0 156 47.4
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 1.5e-34 150.6 222 38.7
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 1.9e-34 150.2 218 35.8
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 2.5e-34 149.8 232 37.5
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 8.2e-33 144.8 240 36.7
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 8.2e-33 144.8 240 36.7
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 8.2e-33 144.8 144 47.9
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 4.0e-32 142.5 148 48.0
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 6.9e-32 141.7 231 32.5
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 2.0e-31 140.2 139 47.5
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 3.2e-29 132.9 224 32.6
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 1.6e-28 130.6 146 46.6
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.7e-28 129.8 206 36.9
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 1.3e-27 127.5 193 35.2
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 1.8e-27 127.1 122 49.2
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 2.2e-25 120.2 230 30.9
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 2.8e-25 119.8 114 49.1
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 4.8e-25 119.0 118 45.8
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-20 104.4 198 32.8
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 2.7e-20 103.2 81 59.3
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 5.7e-18 95.5 113 42.5
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.8e-17 92.4 90 46.7
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 1.1e-16 91.3 123 39.8
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 1.1e-16 91.3 74 55.4
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.4e-16 90.1 125 39.2
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.6e-15 86.7 218 28.4
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 7.7e-15 85.1 146 34.9
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 6.5e-14 82.0 101 40.6
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 1.4e-13 80.9 99 41.4
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 3.2e-13 79.7 99 39.4
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 9.4e-13 78.2 92 38.0
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 1.6e-12 77.4 87 43.7
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.0e-11 74.7 81 44.4
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 6.7e-11 72.0 90 38.9
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.3e-09 67.8 55 58.2
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 1.7e-09 67.4 104 29.8
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 6.3e-09 65.5 82 43.9
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.5e-07 60.8 53 52.8
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.6e-07 60.1 58 50.0
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 2.9e-06 56.6 64 40.6


User provided reference genes

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