Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2UU78P Arachis hypogaea HOM05D003177 ORTHO05D003481 4.7e-225 784.3 413 100.0
arahy.Tifrunner.gnm1.ann1.JSI4TH Arachis hypogaea HOM05D003177 ORTHO05D003481 1.1e-208 729.9 413 94.2
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 5.8e-191 671.0 410 88.0
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 7.1e-189 664.1 410 87.1
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 5.8e-114 415.2 412 56.3
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 5.4e-112 408.7 412 56.1
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 2.0e-111 406.8 352 59.9
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 7.8e-111 404.8 410 55.6
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 1.6e-108 397.1 411 55.0
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 1.6e-108 397.1 441 53.3
Phvul.003G295700 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 6.4e-105 385.2 415 53.7
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 4.4e-98 362.5 413 51.1
VMungo1127G0088 Vigna mungo HOM05D003177 ORTHO05D003481 2.4e-96 356.7 425 49.4
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 2.7e-95 353.2 415 50.4
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 1.1e-85 321.2 353 50.1
Lj3g0022760 Lotus japonicus HOM05D003177 ORTHO05D003481 6.2e-84 315.5 410 46.6
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 3.4e-82 309.7 412 42.7
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 5.8e-82 308.9 412 44.2
Ca_01752_v3 Cicer arietinum L. HOM05D003177 ORTHO05D003481 3.8e-81 306.2 320 50.0
Glyma.12G214200 Glycine max HOM05D003177 ORTHO05D003481 1.2e-79 301.2 411 43.8
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 1.3e-78 297.7 318 48.4
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 2.3e-78 297.0 307 49.5
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 3.9e-78 296.2 355 43.9
Medtr2g082940 Medicago truncatula HOM05D003177 ORTHO05D003481 1.9e-77 293.9 403 44.7
VMungo1080G1398 Vigna mungo HOM05D003177 ORTHO05D003481 1.9e-77 293.9 412 44.4
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 3.3e-77 293.1 346 44.2
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 7.4e-77 292.0 422 41.7
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 7.4e-77 292.0 397 44.8
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 1.3e-76 291.2 430 41.6
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 1.6e-76 290.8 311 47.9
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 3.6e-76 289.7 427 41.0
TPR.G36746 Trifolium pratense HOM05D003177 ORTHO05D003481 3.6e-76 289.7 405 42.2
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 4.8e-76 289.3 349 46.1
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 1.8e-75 287.3 343 44.3
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 1.8e-75 287.3 417 42.9
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 1.2e-74 284.6 420 40.7
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 3.4e-74 283.1 431 41.3
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 4.5e-74 282.7 342 45.9
Potri.011G133100 Populus trichocarpa HOM05D003177 ORTHO05D003481 7.6e-74 282.0 317 47.0
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 1.3e-73 281.2 320 45.3
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 1.7e-73 280.8 306 46.4
Psat5g251840 Pisum sativum HOM05D003177 ORTHO05D003481 2.2e-73 280.4 405 41.5
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 4.9e-73 279.3 397 41.8
RcHm_v2.0_Chr5g0037541 Rosa chinensis HOM05D003177 ORTHO05D003481 3.2e-72 276.6 319 48.3
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 4.2e-72 276.2 376 42.6
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 4.2e-72 276.2 307 45.0
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 5.5e-72 275.8 376 42.6
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 5.5e-72 275.8 374 41.7
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 9.3e-72 275.0 308 44.8
QL08p013313 Quercus lobata HOM05D003177 ORTHO05D003481 2.7e-71 273.5 358 43.6
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 7.9e-71 271.9 391 40.2
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 1.3e-70 271.2 456 40.6
Sabra16G0283700 Salix brachista HOM05D003177 ORTHO05D003481 1.3e-70 271.2 343 42.6
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 1.8e-70 270.8 388 42.3
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 1.8e-70 270.8 392 41.8
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.3e-70 270.4 317 47.3
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 3.0e-70 270.0 312 45.8
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 3.9e-70 269.6 409 40.6
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 6.7e-70 268.9 350 40.9
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.7e-70 268.9 310 48.4
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 8.7e-70 268.5 376 41.5
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 1.1e-69 268.1 317 47.0
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 1.1e-69 268.1 315 45.4
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 1.9e-69 267.3 335 41.8
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 2.5e-69 266.9 259 52.1
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 5.6e-69 265.8 317 46.7
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 9.6e-69 265.0 272 47.8
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.1e-68 263.8 343 44.3
Lj4g0006066 Lotus japonicus HOM05D003177 ORTHO05D003481 3.7e-68 263.1 301 47.2
CAN.G337.89 Capsicum annuum HOM05D003177 ORTHO05D003481 4.8e-68 262.7 317 44.5
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.2e-68 262.3 308 47.1
arahy.Tifrunner.gnm1.ann1.LTHE3G Arachis hypogaea HOM05D003177 ORTHO05D003481 1.8e-67 260.8 376 41.5
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.1e-67 260.0 373 43.2
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 6.9e-67 258.8 373 42.9
Duzib213G0184 Durio zibethinus HOM05D003177 ORTHO05D003481 1.5e-66 257.7 320 44.1
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 2.0e-66 257.3 403 40.0
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 7.6e-66 255.4 305 42.6
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 1.7e-65 254.2 380 39.7
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 2.2e-65 253.8 281 45.6
Medtr7g007510 Medicago truncatula HOM05D003177 ORTHO05D003481 3.8e-65 253.1 291 48.5
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 1.4e-64 251.1 405 37.8
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 4.2e-64 249.6 421 40.1
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 1.2e-63 248.1 321 41.1
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 1.6e-63 247.7 307 42.7
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.3e-62 244.6 367 40.6
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 2.5e-61 240.4 366 41.0
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 1.1e-59 235.0 327 40.4
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 3.1e-59 233.4 318 41.5
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 3.1e-59 233.4 292 42.1
AUR62020553 Chenopodium quinoa HOM05D003177 ORTHO05D003481 3.1e-59 233.4 417 37.6
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 1.2e-58 231.5 399 36.3
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 2.0e-58 230.7 219 52.5
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 7.6e-58 228.8 284 41.2
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 8.5e-57 225.3 372 36.8
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 2.5e-56 223.8 358 37.4
Ciclev10008319m.g Citrus clementina HOM05D003177 ORTHO05D003481 2.5e-56 223.8 289 41.9
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 4.2e-56 223.0 286 41.3
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 7.2e-56 222.2 285 41.8
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 7.2e-56 222.2 285 41.8
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 7.2e-56 222.2 285 41.8
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 2.1e-55 220.7 287 41.8
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 7.9e-55 218.8 401 36.2
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 3.9e-54 216.5 360 36.1
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 8.7e-54 215.3 290 41.0
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 8.7e-54 215.3 292 39.7
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 8.7e-54 215.3 286 41.3
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 4.3e-53 213.0 263 42.2
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 4.3e-53 213.0 292 39.4
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 4.3e-53 213.0 292 39.4
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 5.7e-53 212.6 286 38.5
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 7.4e-53 212.2 406 34.0
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 9.7e-53 211.8 321 37.7
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 1.3e-52 211.5 272 42.6
Medtr4g081210 Medicago truncatula HOM05D003177 ORTHO05D003481 1.3e-52 211.5 311 43.1
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 1.6e-52 211.1 402 35.1
Ciclev10008519m.g Citrus clementina HOM05D003177 ORTHO05D003481 1.6e-52 211.1 335 38.8
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 2.2e-52 210.7 292 39.0
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 2.2e-52 210.7 265 43.0
CsaV3_UNG228980 Cucumis sativus L. HOM05D003177 ORTHO05D003481 3.7e-52 209.9 343 36.7
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 4.8e-52 209.5 360 35.0
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 4.8e-52 209.5 293 39.2
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 6.3e-52 209.1 301 38.5
Glyma.U031131 Glycine max HOM05D003177 ORTHO05D003481 3.1e-51 206.8 149 72.5
Os02g0132600 Oryza sativa ssp. japonica HOM05D003177 ORTHO05D003481 4.1e-51 206.5 323 36.2
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 4.5e-50 203.0 262 40.5
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 7.7e-50 202.2 343 35.6
FAN21G1934 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.9e-49 200.3 239 44.8
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 3.8e-49 199.9 309 39.5
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 6.5e-49 199.1 406 34.2
FvH4_3g43180 Fragaria vesca HOM05D003177 ORTHO05D003481 6.5e-49 199.1 239 44.8
SHI50408 Sapria himalayana HOM05D003177 ORTHO05D003481 1.4e-48 198.0 257 40.1
FvH4_3g43110 Fragaria vesca HOM05D003177 ORTHO05D003481 2.5e-48 197.2 239 44.8
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 1.2e-47 194.9 284 37.7
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 2.1e-47 194.1 407 32.7
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 1.3e-44 184.9 231 48.5
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 1.4e-43 181.4 195 53.3
Phvul.005G091800 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 1.8e-43 181.0 411 35.0
CDE12G0466 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 2.2e-41 174.1 193 44.6
Hma1.2p1_1546F.1_g289980 Hydrangea macrophylla HOM05D003177 ORTHO05D003481 4.2e-40 169.9 196 45.9
PSO478G2228 Papaver somniferum HOM05D003177 ORTHO05D003481 7.9e-39 165.6 253 36.8
Glyma.U031231 Glycine max HOM05D003177 ORTHO05D003481 5.2e-38 162.9 234 44.4
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 6.7e-38 162.5 180 47.8
Sc19g0005960 Simmondsia chinensis HOM05D003177 ORTHO05D003481 1.5e-37 161.4 309 35.0
FvH4_3g42560 Fragaria vesca HOM05D003177 ORTHO05D003481 2.6e-37 160.6 242 40.1
FvH4_3g42340 Fragaria vesca HOM05D003177 ORTHO05D003481 3.3e-37 160.2 242 40.5
FAN21G2694 Fragaria x ananassa HOM05D003177 ORTHO05D003481 9.7e-37 158.7 202 44.6
Cpa.g.sc97.66 Carica papaya HOM05D003177 ORTHO05D003481 1.3e-36 158.3 270 35.9
AL1G67350 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 1.1e-35 155.2 240 40.0
AL1G67370 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 2.2e-33 147.5 266 34.2
FAN11G0113 Fragaria x ananassa HOM05D003177 ORTHO05D003481 5.5e-32 142.9 275 35.3
FAN28G1104 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.6e-29 134.0 286 34.3
FAN11G2904 Fragaria x ananassa HOM05D003177 ORTHO05D003481 9.7e-29 132.1 286 33.9
BcaC09g51195 Brassica carinata HOM05D003177 ORTHO05D003481 2.5e-24 117.5 230 33.0
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 4.2e-24 116.7 191 36.1
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 1.4e-22 111.7 126 49.2
Glyma.13G287400 Glycine max HOM05D003177 ORTHO05D003481 1.3e-20 105.1 114 54.4
SEGI_03301 Sequoiadendron giganteum HOM05D003177 ORTHO05D003481 1.2e-18 98.6 171 31.0
FAN16G1316 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.0e-14 84.0 130 36.2
CARHR228590 Cardamine hirsuta HOM05D003177 ORTHO05D003481 5.7e-13 79.7 88 37.5
FvH4_3g41772 Fragaria vesca HOM05D003177 ORTHO05D003481 1.4e-11 75.1 103 38.8
unitig_26.g9968 Utricularia gibba HOM05D003177 ORTHO05D003481 3.1e-11 73.9 133 36.1
arahy.Tifrunner.gnm1.ann1.F8EV2B Arachis hypogaea HOM05D000479 ORTHO05D003481 1.2e-10 72.0 65 67.7
CsaV3_UNG228990 Cucumis sativus L. HOM05D003177 ORTHO05D003481 3.5e-10 70.5 52 65.4
FAN11G0078 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.0e-09 68.9 125 39.2
Nitab4.5_0000743g0080 Nicotiana tabacum HOM05D003177 ORTHO05D003481 5.2e-06 56.6 100 33.0


User provided reference genes

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