Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 1.6e-106 389.4 197 100.0
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 4.6e-85 318.2 197 85.8
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 1.3e-84 316.6 197 84.8
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 2.2e-79 299.3 194 80.4
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 4.9e-79 298.1 194 79.9
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 1.4e-78 296.6 194 78.4
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 1.4e-78 296.6 194 79.4
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 1.4e-78 296.6 194 79.4
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 2.4e-78 295.8 194 79.4
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 2.4e-78 295.8 197 78.7
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 5.4e-78 294.7 194 78.9
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 5.1e-76 288.1 194 75.8
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 5.1e-76 288.1 197 75.1
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 5.1e-76 288.1 197 75.1
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 8.6e-76 287.3 194 75.8
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 1.1e-75 287.0 194 75.3
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 2.5e-75 285.8 195 73.8
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 3.3e-75 285.4 194 75.8
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 5.6e-75 284.6 197 76.1
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 7.3e-75 284.3 197 74.6
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 9.6e-75 283.9 194 75.3
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.2e-74 283.5 194 75.3
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 1.2e-74 283.5 195 74.9
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.2e-74 283.5 195 74.9
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.2e-74 283.5 195 74.9
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 1.2e-74 283.5 195 74.9
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 1.6e-74 283.1 197 74.1
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 2.1e-74 282.7 194 75.3
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.1e-74 282.7 195 74.9
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 4.7e-74 281.6 194 75.3
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 8.1e-74 280.8 193 74.6
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.1e-73 280.4 194 73.2
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.1e-73 280.4 194 74.2
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.4e-73 280.0 194 73.7
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 1.4e-73 280.0 194 75.3
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 1.8e-73 279.6 197 73.1
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 3.1e-73 278.9 195 72.3
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 6.8e-73 277.7 197 72.1
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 6.8e-73 277.7 197 72.1
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 1.5e-72 276.6 194 74.7
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 2.0e-72 276.2 194 74.7
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 2.0e-72 276.2 194 72.7
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 2.0e-72 276.2 197 72.1
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 2.6e-72 275.8 197 74.1
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 3.4e-72 275.4 195 71.3
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 3.4e-72 275.4 194 72.7
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 4.4e-72 275.0 193 72.5
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 4.4e-72 275.0 197 72.6
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 7.6e-72 274.2 197 71.1
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 9.9e-72 273.9 193 73.1
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 9.9e-72 273.9 194 71.1
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 9.9e-72 273.9 197 70.6
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 1.7e-71 273.1 194 72.7
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.2e-71 272.7 197 70.6
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 2.2e-71 272.7 197 70.6
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.9e-71 272.3 197 70.1
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 2.9e-71 272.3 197 70.6
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.9e-71 272.3 194 72.7
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.4e-71 271.2 212 68.4
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 8.4e-71 270.8 197 71.6
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.4e-71 270.8 212 68.4
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.4e-71 270.8 212 68.4
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 8.4e-71 270.8 194 72.2
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.1e-70 270.4 197 70.6
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 1.1e-70 270.4 193 71.5
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.4e-70 270.0 197 70.1
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 1.4e-70 270.0 176 79.0
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 7.1e-70 267.7 197 69.0
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.6e-69 266.5 194 69.6
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 2.1e-69 266.2 197 71.6
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.1e-69 266.2 212 65.6
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 2.7e-69 265.8 197 69.0
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 2.7e-69 265.8 194 69.6
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 3.5e-69 265.4 197 68.5
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 4.6e-69 265.0 197 68.5
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 7.8e-69 264.2 214 65.9
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.3e-68 263.5 193 68.9
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.7e-68 263.1 193 68.9
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.3e-68 262.7 197 68.0
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.3e-68 262.7 197 70.1
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 3.0e-68 262.3 197 68.5
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 3.9e-68 261.9 177 74.6
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 6.6e-68 261.2 197 67.5
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 8.7e-68 260.8 210 65.2
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.5e-67 260.0 220 63.6
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.3e-67 258.8 197 66.0
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 3.3e-67 258.8 192 70.3
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 5.6e-67 258.1 177 73.4
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 1.6e-66 256.5 197 67.5
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 2.1e-66 256.1 197 67.5
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 2.8e-66 255.8 178 72.5
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 3.6e-66 255.4 197 67.0
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 8.1e-66 254.2 235 59.1
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.1e-65 253.8 197 68.0
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 1.8e-65 253.1 197 73.6
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.4e-65 252.7 171 74.3
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 5.3e-65 251.5 177 71.8
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 1.5e-64 250.0 177 70.6
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 2.0e-64 249.6 178 70.2
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.0e-64 249.6 177 70.6
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 4.4e-64 248.4 194 62.9
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 9.9e-64 247.3 194 64.4
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 6.4e-63 244.6 175 70.3
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 1.9e-62 243.0 173 72.3
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.9e-62 243.0 183 69.4
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.6e-61 240.0 183 68.9
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 6.0e-61 238.0 177 68.9
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 7.8e-61 237.7 206 63.6
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 1.3e-60 236.9 195 65.1
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.3e-60 236.9 197 63.5
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 3.0e-60 235.7 193 64.2
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.9e-60 235.3 178 69.1
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 1.5e-59 233.4 180 66.7
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 1.9e-59 233.0 194 60.8
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 3.6e-58 228.8 195 63.1
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 3.1e-57 225.7 177 65.5
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.5e-56 223.4 154 71.4
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.5e-56 223.4 264 50.0
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 1.3e-55 220.3 179 64.8
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 1.7e-55 219.9 177 64.4
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.7e-55 219.9 185 64.9
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 4.9e-55 218.4 195 61.5
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 6.4e-55 218.0 198 62.1
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 1.1e-54 217.2 152 71.1
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 6.0e-53 211.5 179 62.6
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 7.9e-53 211.1 126 83.3
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 1.8e-52 209.9 126 82.5
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 3.0e-52 209.1 124 86.3
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 8.7e-52 207.6 124 83.1
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 1.9e-51 206.5 122 83.6
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 2.1e-50 203.0 151 66.9
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 3.7e-50 202.2 124 81.5
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 3.7e-50 202.2 195 58.5
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.8e-49 199.9 159 64.8
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 4.0e-49 198.7 216 50.0
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 6.9e-49 198.0 123 79.7
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 9.0e-49 197.6 183 60.1
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.2e-48 197.2 185 56.2
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 1.3e-47 193.7 123 81.3
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.3e-44 183.7 145 68.3
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.0e-44 182.6 169 59.2
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 8.2e-42 174.5 164 55.5
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 1.4e-41 173.7 109 80.7
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 8.4e-39 164.5 92 85.9
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.0e-36 157.5 95 86.3
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 8.2e-34 147.9 118 61.9
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.3e-31 140.6 83 83.1
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 3.8e-31 139.0 117 61.5
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 6.7e-28 128.3 87 69.0
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.7e-26 123.6 93 66.7
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.1e-25 120.9 82 69.5
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.5e-24 117.1 73 79.5
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 2.0e-24 116.7 103 62.1
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 4.2e-22 109.0 95 61.1
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.2e-21 107.5 74 67.6
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.0e-19 100.1 106 51.9
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.4e-19 98.2 64 71.9
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.1e-17 92.4 65 70.8
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 3.2e-14 82.8 49 83.7
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 3.2e-14 82.8 49 83.7
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 5.5e-14 82.0 114 43.9
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 7.2e-14 81.6 193 32.1
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 8.0e-13 78.2 110 48.2
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.9e-12 75.9 44 72.7
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 2.6e-11 73.2 173 30.6
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.6e-11 73.2 38 84.2


User provided reference genes

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