Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 2354.3 1113 100.0
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 2334.7 1113 99.1
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1991.9 1120 82.4
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1987.6 1108 83.1
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1971.8 1120 81.2
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1965.3 1112 81.1
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1958.0 1106 80.9
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1954.5 1123 80.9
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1949.9 1121 80.0
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1948.3 1119 79.9
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1939.1 1114 79.6
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1898.2 1066 81.6
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1776.9 1109 72.4
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1758.4 1117 71.4
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1758.4 1117 71.6
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1753.8 1109 72.1
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1753.8 1111 71.0
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1750.7 1109 72.1
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1747.6 1118 71.4
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1744.9 1111 71.2
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1742.2 1109 71.4
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1741.9 1109 71.9
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1739.2 1109 71.9
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1734.9 1109 71.3
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1733.8 1114 71.8
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1723.0 1120 70.3
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1711.0 1113 70.2
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1709.1 1106 71.0
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1708.3 1109 70.5
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1703.3 1109 69.4
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1702.6 1114 69.0
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1701.8 1110 69.7
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1697.2 1124 69.5
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1694.9 1110 69.8
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1688.3 1110 68.7
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1687.9 1108 69.9
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1684.8 1109 68.8
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1684.8 1111 69.9
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1681.8 1105 69.6
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1674.1 1099 69.5
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1667.1 1117 68.5
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1665.2 1109 67.4
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1662.5 1117 68.8
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1659.8 1101 68.5
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1657.9 1109 67.7
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1645.9 1101 67.8
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1645.9 1220 64.2
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1645.6 1067 69.8
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1645.2 1103 67.5
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1644.8 1095 67.9
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1642.9 1115 67.5
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1642.9 1116 68.3
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1642.1 1087 68.1
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1639.8 1106 67.5
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1639.8 1094 67.8
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1639.8 1098 67.4
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1638.6 1109 67.7
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1637.5 1096 67.8
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1637.1 1103 67.0
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1634.8 1103 67.0
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1634.8 1103 67.1
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1628.2 1121 66.5
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1627.5 1093 67.6
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1626.3 1109 68.2
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1624.4 1104 67.0
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1623.6 1108 66.5
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1618.6 1108 66.6
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1614.0 1110 66.8
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1609.0 1108 66.5
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1595.1 1117 65.0
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1592.0 1107 66.0
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1587.0 1108 66.1
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1582.0 1096 65.6
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1579.3 1093 66.8
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1575.5 989 72.9
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1572.0 1058 67.5
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1572.0 1124 63.7
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1562.0 1111 64.4
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1561.2 1118 64.9
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1549.3 1102 63.2
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1540.0 1125 62.8
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1528.5 1098 64.2
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1525.0 1122 62.7
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1492.2 1075 62.7
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1453.3 1153 59.8
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1448.7 990 67.5
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1387.9 896 71.5
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1357.8 915 67.8
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1273.8 1154 52.6
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1242.6 1107 53.6
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1239.6 1118 53.3
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1229.5 1034 56.6
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1224.5 832 67.1
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1201.4 832 66.6
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1159.4 1120 50.9
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1146.3 749 69.0
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1112.1 739 67.7
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1104.7 753 66.7
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 2.3e-311 1072.4 664 73.0
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 3.6e-296 1021.9 1137 46.9
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 7.8e-283 977.6 690 65.7
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 5.3e-247 858.6 675 60.3
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 2.0e-230 803.5 498 73.7
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 7.5e-217 758.4 516 66.3
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 1.8e-215 753.8 516 66.3
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.3e-197 694.5 568 56.5
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 1.2e-166 591.7 1498 30.0
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 3.9e-149 533.5 382 65.4
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 5.1e-149 533.1 599 45.9
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 6.7e-133 479.6 281 76.5
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 4.5e-113 413.7 1102 28.6
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 2.2e-112 411.4 240 75.8
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 8.0e-110 402.9 272 69.9
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 6.7e-109 399.8 841 33.9
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 3.4e-84 317.8 200 71.0
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 4.9e-83 313.9 195 70.8
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 3.1e-77 294.7 174 77.0
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 2.9e-75 288.1 259 52.1
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 2.6e-68 265.0 208 59.1
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 3.5e-65 254.6 156 69.9
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 4.0e-61 241.1 167 68.3
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 1.1e-55 223.0 165 61.2
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.7e-51 209.1 209 49.8
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 2.0e-44 185.7 121 66.9
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 2.7e-41 175.3 122 67.2
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 3.2e-34 151.8 113 59.3
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 7.4e-31 140.6 189 40.7
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 9.6e-31 140.2 127 52.0
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.6e-30 139.4 137 47.4
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 6.9e-29 134.0 81 71.6
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 6.9e-29 134.0 171 42.7
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 4.5e-28 131.3 75 72.0
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 3.8e-27 128.3 138 45.7
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 8.4e-27 127.1 133 46.6
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 1.9e-26 125.9 96 60.4
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 2.5e-26 125.6 134 46.3
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 1.6e-25 122.9 146 47.3
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 7.9e-25 120.6 141 48.9
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 4.1e-21 108.2 53 90.6
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 2.0e-20 105.9 117 50.4
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 2.1e-17 95.9 100 48.0
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 5.1e-16 91.3 66 57.6
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 6.3e-14 84.3 121 43.0
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 2.0e-12 79.3 50 70.0
Cfa026367 Carpinus fangiana HOM05D005112 ORTHO05D123685 3.4e-12 78.6 400 24.2
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 2.5e-10 72.4 84 41.7
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 4.2e-10 71.6 60 55.0
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 7.2e-10 70.9 43 65.1
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 2.7e-09 68.9 43 62.8
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 1.0e-08 67.0 43 60.5
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 1.4e-08 66.6 43 62.8
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 3.9e-08 65.1 47 55.3
BcaC08g43326 Brassica carinata HOM05D005112 ORTHO05D006681 2.0e-07 62.8 57 50.9
Lsat_1_v5_gn_5_181001 Lactuca sativa HOM05D005112 ORTHO05D006681 2.6e-07 62.4 94 37.2


User provided reference genes

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