Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2K5AT5 Arachis hypogaea HOM05D005164 ORTHO05D006398 2.5e-40 168.3 85 100.0
arahy.Tifrunner.gnm1.ann1.ZV61IE Arachis hypogaea HOM05D005164 ORTHO05D006398 7.6e-29 130.2 73 91.8
arahy.Tifrunner.gnm1.ann1.D3INNH Arachis hypogaea HOM05D005164 ORTHO05D006398 2.9e-12 75.1 42 90.5
arahy.Tifrunner.gnm1.ann1.R33BY8 Arachis hypogaea HOM05D005164 ORTHO05D006398 2.9e-12 75.1 42 90.5
Ca_25003_v3 Cicer arietinum L. HOM05D005164 ORTHO05D006398 8.5e-12 73.6 41 90.2
TPR.G3648 Trifolium pratense HOM05D005164 ORTHO05D006398 8.5e-12 73.6 41 90.2
Ciclev10001386m.g Citrus clementina HOM05D005164 ORTHO05D006398 1.1e-11 73.2 42 85.7
HanXRQChr02g0040181 Helianthus annuus HOM05D005164 ORTHO05D006398 1.4e-11 72.8 61 63.9
Potri.014G180800 Populus trichocarpa HOM05D005164 ORTHO05D006398 1.4e-11 72.8 41 87.8
Sabra14G0141000 Salix brachista HOM05D005164 ORTHO05D006398 1.4e-11 72.8 41 87.8
Cpa.g.sc64.68 Carica papaya HOM05D005164 ORTHO05D006398 1.9e-11 72.4 42 83.3
Lj3g0003260 Lotus japonicus HOM05D005164 ORTHO05D006398 1.9e-11 72.4 49 79.6
MD15G1029900 Malus domestica HOM05D005164 ORTHO05D006398 1.9e-11 72.4 42 83.3
COL.COLO4_26343 Corchorus olitorius HOM05D005164 ORTHO05D006398 4.2e-11 71.2 42 83.3
Duzib041G0411 Durio zibethinus HOM05D005164 ORTHO05D006398 4.2e-11 71.2 42 83.3
Duzib093G0265 Durio zibethinus HOM05D005164 ORTHO05D006398 4.2e-11 71.2 42 83.3
Glyma.09G231100 Glycine max HOM05D005164 ORTHO05D006398 4.2e-11 71.2 42 85.7
Glyma.12G005400 Glycine max HOM05D005164 ORTHO05D006398 4.2e-11 71.2 42 85.7
Gohir.A03G078200 Gossypium hirsutum HOM05D005164 ORTHO05D006398 4.2e-11 71.2 42 83.3
Gohir.D02G094300 Gossypium hirsutum HOM05D005164 ORTHO05D006398 4.2e-11 71.2 42 83.3
Gorai.005G107200 Gossypium raimondii HOM05D005164 ORTHO05D006398 4.2e-11 71.2 42 83.3
Lsat_1_v5_gn_1_17561 Lactuca sativa HOM05D005164 ORTHO05D006398 4.2e-11 71.2 61 60.7
Thecc.08G024200 Theobroma cacao HOM05D005164 ORTHO05D006398 4.2e-11 71.2 42 83.3
Atru.chr13.515 Acer truncatum HOM05D005164 ORTHO05D006398 5.5e-11 70.9 42 81.0
Migut.N00498 Erythranthe guttata HOM05D005164 ORTHO05D006398 7.2e-11 70.5 47 72.3
Eucgr.F01909 Eucalyptus grandis HOM05D005164 ORTHO05D006398 7.2e-11 70.5 53 64.2
Gohir.A05G260000 Gossypium hirsutum HOM05D005164 ORTHO05D006398 7.2e-11 70.5 49 71.4
Gorai.009G273800 Gossypium raimondii HOM05D005164 ORTHO05D006398 7.2e-11 70.5 49 71.4
MD08G1033300 Malus domestica HOM05D005164 ORTHO05D006398 7.2e-11 70.5 42 81.0
Hund21200 Selenicereus undatus HOM05D005164 ORTHO05D006398 7.2e-11 70.5 47 72.3
Psat3g167280 Pisum sativum HOM05D005164 ORTHO05D006398 9.4e-11 70.1 48 77.1
Potri.002G263200 Populus trichocarpa HOM05D005164 ORTHO05D006398 9.4e-11 70.1 41 82.9
Prupe.1G381600 Prunus persica HOM05D005164 ORTHO05D006398 9.4e-11 70.1 42 81.0
CANSAT25G0119 Cannabis sativa HOM05D005164 ORTHO05D006398 1.2e-10 69.7 42 81.0
CANSAT64G0480 Cannabis sativa HOM05D005164 ORTHO05D006398 1.2e-10 69.7 42 81.0
Gohir.D01G104900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.2e-10 69.7 41 82.9
Gorai.002G128900 Gossypium raimondii HOM05D005164 ORTHO05D006398 1.2e-10 69.7 41 82.9
CAN.G1126.40 Capsicum annuum HOM05D005164 ORTHO05D006398 1.6e-10 69.3 42 81.0
CiPaw.15G075600 Carya illinoinensis HOM05D005164 ORTHO05D006398 1.6e-10 69.3 47 72.3
CiPaw.16G055400 Carya illinoinensis HOM05D005164 ORTHO05D006398 1.6e-10 69.3 47 72.3
Gohir.D05G261900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.6e-10 69.3 42 78.6
Peaxi162Scf00690g00117 Petunia axillaris HOM05D005164 ORTHO05D006398 1.6e-10 69.3 42 81.0
PGR031G3751 Punica granatum HOM05D005164 ORTHO05D006398 1.6e-10 69.3 42 78.6
QL02p007897 Quercus lobata HOM05D005164 ORTHO05D006398 1.6e-10 69.3 47 72.3
Solyc04g080160.3 Solanum lycopersicum HOM05D005164 ORTHO05D006398 1.6e-10 69.3 42 81.0
Sopen04g033750 Solanum pennellii HOM05D005164 ORTHO05D006398 1.6e-10 69.3 42 81.0
PGSC0003DMG400005163 Solanum tuberosum HOM05D005164 ORTHO05D006398 1.6e-10 69.3 42 81.0
TWI56G0324 Tripterygium wilfordii HOM05D005164 ORTHO05D006398 1.6e-10 69.3 42 78.6
Gohir.A01G116500 Gossypium hirsutum HOM05D005164 ORTHO05D006398 2.1e-10 68.9 41 82.9
EL10Ac8g20456 Beta vulgaris HOM05D005164 ORTHO05D006398 2.7e-10 68.6 47 70.2
Manes.18G028500 Manihot esculenta HOM05D005164 ORTHO05D006398 2.7e-10 68.6 42 78.6
Cfa018135 Carpinus fangiana HOM05D005164 ORTHO05D006398 3.6e-10 68.2 47 70.2
DCAR_019523 Daucus carota HOM05D005164 ORTHO05D006398 3.6e-10 68.2 41 80.5
ECA247G1488 Erigeron canadensis HOM05D005164 ORTHO05D006398 3.6e-10 68.2 61 60.7
Phvul.011G006200 Phaseolus vulgaris HOM05D005164 ORTHO05D006398 3.6e-10 68.2 42 81.0
SalBow8G2733 Salvia bowleyana HOM05D005164 ORTHO05D006398 3.6e-10 68.2 42 73.8
VMungo1127G0366 Vigna mungo HOM05D005164 ORTHO05D006398 3.6e-10 68.2 42 81.0
Sc02g0006310 Simmondsia chinensis HOM05D005164 ORTHO05D006398 4.6e-10 67.8 53 66.0
AUR62014895 Chenopodium quinoa HOM05D005164 ORTHO05D006398 6.1e-10 67.4 49 67.3
Medtr0173s0030 Medicago truncatula HOM05D005164 ORTHO05D006398 6.1e-10 67.4 41 82.9
Lj4C784T1 Lonicera japonica HOM05D005164 ORTHO05D006398 1.0e-09 66.6 52 65.4
RcHm_v2.0_Chr6g0300751 Rosa chinensis HOM05D005164 ORTHO05D006398 1.0e-09 66.6 42 76.2
AUR62031100 Chenopodium quinoa HOM05D005164 ORTHO05D006398 1.4e-09 66.2 47 68.1
Actinidia15313 Actinidia chinensis HOM05D005164 ORTHO05D006398 1.8e-09 65.9 52 67.3
Actinidia22558 Actinidia chinensis HOM05D005164 ORTHO05D006398 1.8e-09 65.9 52 67.3
Aqoxy6G01049 Aquilegia oxysepala HOM05D005164 ORTHO05D006398 2.3e-09 65.5 42 73.8
GSVIVG01009684001 Vitis vinifera HOM05D005164 ORTHO05D006398 3.0e-09 65.1 42 78.6
Cc10_g03080 Coffea canephora HOM05D005164 ORTHO05D006398 3.9e-09 64.7 42 73.8
Manes.05G161900 Manihot esculenta HOM05D005164 ORTHO05D006398 3.9e-09 64.7 41 70.7
MSTRG.24294 Avicennia marina HOM05D005164 ORTHO05D006398 5.1e-09 64.3 41 75.6
CARHR181050 Cardamine hirsuta HOM05D005164 ORTHO05D006398 5.1e-09 64.3 47 68.1
vmacro21627 Vaccinium macrocarpon HOM05D005164 ORTHO05D006398 5.1e-09 64.3 42 73.8
AT5G42970 Arabidopsis thaliana HOM05D005164 ORTHO05D006398 6.7e-09 63.9 42 73.8
Carub.0008s0578 Capsella rubella HOM05D005164 ORTHO05D006398 6.7e-09 63.9 42 73.8
Dinv36062 Davidia involucrata HOM05D005164 ORTHO05D006398 6.7e-09 63.9 42 76.2
Hma1.2p1_0023F.1_g014900 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 6.7e-09 63.9 49 67.3
Rhsim06G0035000 Rhododendron simsii HOM05D005164 ORTHO05D006398 6.7e-09 63.9 42 73.8
THA.LOC104822841 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 6.7e-09 63.9 42 71.4
TAR376G0296 Trochodendron aralioides HOM05D005164 ORTHO05D006398 6.7e-09 63.9 49 67.3
BcaC02g10785 Brassica carinata HOM05D005164 ORTHO05D006398 8.8e-09 63.5 49 65.3
C04p25110 Brassica napus HOM05D005164 ORTHO05D006398 8.8e-09 63.5 49 65.3
BolC4t24015H Brassica oleracea HOM05D005164 ORTHO05D006398 8.8e-09 63.5 49 65.3
Oeu009868.2 Olea europaea HOM05D005164 ORTHO05D006398 8.8e-09 63.5 42 66.7
PSO541G6137 Papaver somniferum HOM05D005164 ORTHO05D006398 8.8e-09 63.5 42 73.8
PSO675G3600 Papaver somniferum HOM05D005164 ORTHO05D006398 8.8e-09 63.5 42 73.8
Aa31LG9G13090 Aethionema arabicum HOM05D005164 ORTHO05D006398 1.1e-08 63.2 42 71.4
arahy.Tifrunner.gnm1.ann1.ABX6XB Arachis hypogaea HOM05D005164 ORTHO05D006398 1.1e-08 63.2 33 97.0
A02p27610 Brassica napus HOM05D005164 ORTHO05D006398 1.1e-08 63.2 49 65.3
BolC2t10406H Brassica oleracea HOM05D005164 ORTHO05D006398 1.1e-08 63.2 49 65.3
BraA02t07794Z Brassica rapa HOM05D005164 ORTHO05D006398 1.1e-08 63.2 49 65.3
AL8G17800 Arabidopsis lyrata HOM05D005164 ORTHO05D006398 1.5e-08 62.8 42 71.4
Thhalv10003436m.g Eutrema salsugineum HOM05D005164 ORTHO05D006398 1.5e-08 62.8 42 71.4
Sp2g07720 Schrenkiella parvula HOM05D005164 ORTHO05D006398 1.5e-08 62.8 42 71.4
Sed0021376 Sechium edule HOM05D005164 ORTHO05D006398 1.5e-08 62.8 47 68.1
Zm00001eb008060 Zea mays HOM05D005164 ORTHO05D006398 1.5e-08 62.8 49 67.3
A06p48120 Brassica napus HOM05D005164 ORTHO05D006398 1.9e-08 62.4 42 71.4
BraA06t27681Z Brassica rapa HOM05D005164 ORTHO05D006398 1.9e-08 62.4 42 71.4
FvH4_2g40000 Fragaria vesca HOM05D005164 ORTHO05D006398 2.5e-08 62.0 43 74.4
FAN27G0257 Fragaria x ananassa HOM05D005164 ORTHO05D006398 2.5e-08 62.0 43 74.4
Nn5g29540 Nelumbo nucifera HOM05D005164 ORTHO05D006398 2.5e-08 62.0 42 71.4
THA.LOC104814156 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 2.5e-08 62.0 42 69.0
MBI17_g39721_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 3.3e-08 61.6 42 71.4
Sopen04g033730 Solanum pennellii HOM05D005164 ORTHO05D006398 3.3e-08 61.6 42 73.8
BcaC06g31734 Brassica carinata HOM05D005164 ORTHO05D006398 4.3e-08 61.2 42 69.0
ClCG05G019140 Citrullus lanatus HOM05D005164 ORTHO05D006398 4.3e-08 61.2 47 68.1
MELO3C003848.2 Cucumis melo HOM05D005164 ORTHO05D006398 4.3e-08 61.2 47 68.1
CsaV3_3G045000 Cucumis sativus L. HOM05D005164 ORTHO05D006398 4.3e-08 61.2 47 68.1
Sed0001534 Sechium edule HOM05D005164 ORTHO05D006398 4.3e-08 61.2 47 68.1
BcaC03g16546 Brassica carinata HOM05D005164 ORTHO05D006398 7.4e-08 60.5 49 63.3
C02p43640 Brassica napus HOM05D005164 ORTHO05D006398 7.4e-08 60.5 49 63.3
CDE01G0241 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 7.4e-08 60.5 49 61.2
CDE02G4403 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 7.4e-08 60.5 49 61.2
FAN15G2586 Fragaria x ananassa HOM05D005164 ORTHO05D006398 7.4e-08 60.5 43 72.1
Os03g0197400 Oryza sativa ssp. japonica HOM05D005164 ORTHO05D006398 7.4e-08 60.5 44 70.5
BcaB07g30597 Brassica carinata HOM05D005164 ORTHO05D006398 9.7e-08 60.1 49 61.2
Carub.0004s0266 Capsella rubella HOM05D005164 ORTHO05D006398 1.3e-07 59.7 42 69.0
FAN20G1227 Fragaria x ananassa HOM05D005164 ORTHO05D006398 1.3e-07 59.7 43 72.1
ATR0733G076 Amborella trichopoda HOM05D005164 ORTHO05D006398 2.2e-07 58.9 42 69.0
unitig_22.g6774 Utricularia gibba HOM05D005164 ORTHO05D006398 1.4e-06 56.2 42 61.9
Hma1.2p1_0469F.1_g159190 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 6.9e-06 53.9 60 53.3
CBR_g36268 Chara braunii HOM05D005164 ORTHO05D006398 9.1e-06 53.5 42 57.1


User provided reference genes

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