Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 5.8e-98 360.9 185 100.0
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 2.7e-63 245.7 185 74.6
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 2.6e-58 229.2 185 69.7
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 1.0e-57 227.3 185 68.6
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.7e-57 226.5 185 69.2
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 2.9e-57 225.7 185 68.6
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 3.8e-57 225.3 185 68.6
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 9.3e-56 220.7 185 68.6
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 7.9e-55 217.6 185 66.5
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 7.9e-55 217.6 183 66.7
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 1.8e-54 216.5 179 67.6
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 1.8e-54 216.5 183 66.7
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 8.7e-54 214.2 179 67.0
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 7.4e-53 211.1 176 67.6
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 1.3e-52 210.3 183 65.0
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.8e-52 209.1 185 63.8
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 4.8e-52 208.4 171 69.6
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 9.0e-51 204.1 185 62.2
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 2.6e-50 202.6 185 62.2
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 3.4e-50 202.2 185 61.6
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 4.5e-50 201.8 185 60.5
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 4.5e-50 201.8 184 61.4
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 1.3e-49 200.3 185 62.2
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 2.2e-49 199.5 185 62.2
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 3.2e-48 195.7 185 59.5
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 3.2e-48 195.7 232 50.0
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 5.5e-48 194.9 185 61.6
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 5.5e-48 194.9 185 59.5
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 9.3e-48 194.1 183 62.3
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 2.7e-47 192.6 185 59.5
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 2.7e-47 192.6 185 61.1
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.8e-46 189.9 186 60.8
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 5.7e-45 184.9 174 60.9
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 3.1e-43 179.1 186 58.1
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 3.1e-43 179.1 183 59.6
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 3.1e-43 179.1 201 54.2
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 5.3e-43 178.3 184 59.2
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 5.3e-43 178.3 182 54.9
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 6.9e-43 177.9 184 57.6
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 6.9e-43 177.9 186 55.9
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 9.1e-43 177.6 182 57.1
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 5.9e-42 174.9 184 57.1
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 7.7e-42 174.5 184 54.3
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 1.0e-41 174.1 178 59.0
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 1.7e-41 173.3 182 57.1
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.8e-41 172.2 186 55.4
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.8e-41 172.2 186 55.4
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 8.5e-41 171.0 186 54.8
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 5.5e-40 168.3 184 53.3
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 9.4e-40 167.5 184 52.7
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 6.1e-39 164.9 180 53.3
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 3.9e-38 162.2 182 56.6
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 6.7e-38 161.4 182 52.7
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 8.8e-38 161.0 186 54.3
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.6e-37 159.5 182 52.7
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 5.7e-37 158.3 184 50.5
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 1.7e-36 156.8 270 43.7
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.7e-36 156.8 182 54.4
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 1.7e-36 156.8 182 54.4
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.7e-36 156.8 182 54.4
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 2.2e-36 156.4 182 52.2
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 2.2e-36 156.4 182 51.1
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.7e-36 155.6 182 53.8
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.8e-36 155.2 182 53.8
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 6.3e-36 154.8 186 48.9
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 6.3e-36 154.8 182 50.5
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.1e-35 154.1 182 51.1
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 3.1e-35 152.5 182 48.9
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 2.0e-34 149.8 184 51.1
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 2.6e-34 149.4 182 49.5
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 7.7e-34 147.9 182 48.9
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 7.7e-34 147.9 182 48.9
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 1.3e-33 147.1 156 55.8
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 1.3e-33 147.1 185 49.7
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 1.3e-33 147.1 182 47.8
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 1.7e-33 146.7 185 49.2
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 1.7e-33 146.7 182 47.3
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.9e-33 146.0 184 49.5
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.5e-33 144.8 182 48.4
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 8.5e-33 144.4 186 51.1
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.4e-32 143.7 182 48.4
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 2.5e-32 142.9 182 51.1
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 2.5e-32 142.9 174 50.6
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 3.2e-32 142.5 186 50.5
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 5.5e-32 141.7 182 46.7
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 9.4e-32 141.0 182 50.5
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.2e-31 140.6 188 49.5
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.6e-31 140.2 181 47.5
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 3.6e-31 139.0 182 50.0
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 3.6e-31 139.0 183 48.6
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 3.6e-31 139.0 180 48.3
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 3.6e-31 139.0 182 51.1
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 7.9e-31 137.9 182 50.0
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 7.9e-31 137.9 184 46.7
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.4e-30 137.1 181 47.0
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 2.3e-30 136.3 184 46.2
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.0e-30 136.0 186 50.0
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 3.0e-30 136.0 182 50.5
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 3.9e-30 135.6 184 46.2
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 3.9e-30 135.6 180 47.8
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 5.2e-30 135.2 179 45.8
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 8.8e-30 134.4 182 49.5
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 8.8e-30 134.4 186 49.5
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.3e-29 132.5 181 45.9
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 5.7e-29 131.7 183 47.0
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 7.4e-29 131.3 179 48.0
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 7.4e-29 131.3 182 50.0
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 1.3e-28 130.6 183 47.5
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 2.8e-28 129.4 184 47.3
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 6.3e-28 128.3 185 48.1
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 8.2e-28 127.9 191 46.1
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 8.2e-28 127.9 184 41.8
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 8.2e-28 127.9 182 46.2
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 8.2e-28 127.9 179 46.4
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 1.4e-27 127.1 210 43.8
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 3.1e-27 125.9 184 45.7
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 4.1e-27 125.6 182 45.1
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 9.1e-27 124.4 170 47.6
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 9.1e-27 124.4 170 47.6
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.2e-26 124.0 182 45.1
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 5.9e-26 121.7 70 84.3
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 2.2e-25 119.8 70 80.0
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 1.9e-24 116.7 150 50.0
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 3.2e-24 115.9 184 41.3
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 4.2e-24 115.5 186 42.5
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 4.2e-24 115.5 178 42.1
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 9.4e-24 114.4 70 77.1
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 8.0e-23 111.3 67 83.6
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 3.0e-22 109.4 181 43.1
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 3.0e-22 109.4 180 40.6
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 3.0e-22 109.4 180 41.1
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 5.2e-22 108.6 152 46.1
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 6.7e-22 108.2 180 42.8
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 6.7e-22 108.2 180 42.8
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 6.7e-22 108.2 180 42.8
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 8.8e-22 107.8 151 47.0
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.5e-21 107.1 160 46.9
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 2.0e-21 106.7 139 48.2
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 2.6e-21 106.3 180 40.0
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 2.6e-21 106.3 179 40.8
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 3.3e-21 105.9 180 40.6
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 4.4e-21 105.5 168 41.7
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 9.7e-21 104.4 182 38.5
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 1.3e-20 104.0 174 42.5
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.4e-19 99.8 65 70.8
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.1e-19 99.4 143 44.1
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.0e-18 96.7 179 42.5
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 2.0e-18 96.7 69 66.7
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 2.7e-18 96.3 176 38.6
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 4.5e-18 95.5 179 39.7
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 1.7e-17 93.6 149 43.6
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 2.9e-17 92.8 74 58.1
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.2e-16 89.4 65 69.2
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 4.2e-16 89.0 183 37.7
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 9.4e-16 87.8 170 40.6
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 2.1e-15 86.7 63 66.7
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 2.7e-15 86.3 69 62.3
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 4.7e-15 85.5 170 37.1
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 6.1e-15 85.1 50 78.0
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 8.0e-15 84.7 67 62.7
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 2.3e-14 83.2 182 36.3
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 6.8e-14 81.6 153 35.9
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 4.4e-13 79.0 68 57.4
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 1.7e-12 77.0 64 62.5
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 1.4e-11 73.9 175 36.6
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.4e-11 72.0 62 54.8
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 2.0e-10 70.1 62 61.3
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.0e-10 70.1 62 54.8
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 2.0e-10 70.1 35 91.4
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.5e-10 68.9 66 48.5
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 4.5e-10 68.9 62 59.7
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 5.9e-10 68.6 53 56.6
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 7.7e-10 68.2 65 58.5
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 1.7e-09 67.0 32 93.8
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 3.8e-09 65.9 54 63.0
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 1.2e-07 60.8 56 48.2
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.6e-07 60.5 65 50.8
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 2.8e-07 59.7 43 67.4
ATR0347G001 Amborella trichopoda HOM05D004104 ORTHO05D004755 4.7e-07 58.9 63 52.4
QL09p049090 Quercus lobata HOM05D005758 ORTHO05D007218 1.4e-06 57.4 36 77.8


User provided reference genes

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