Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 2.1e-109 399.4 264 100.0
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 8.5e-87 324.3 227 99.1
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 1.3e-66 257.3 238 82.4
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 2.0e-64 250.0 234 81.6
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 2.7e-64 249.6 239 81.2
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 4.6e-64 248.8 237 80.6
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 6.2e-61 238.4 241 78.4
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 1.4e-60 237.3 241 77.6
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 5.2e-60 235.3 238 79.4
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 2.0e-59 233.4 240 77.1
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 2.0e-59 233.4 241 77.6
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 1.6e-56 223.8 238 76.5
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 7.8e-56 221.5 239 75.7
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 1.3e-55 220.7 237 75.5
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 1.3e-55 220.7 238 76.5
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 1.3e-55 220.7 234 75.2
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 1.1e-54 217.6 246 72.4
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 1.1e-54 217.6 239 74.1
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 1.5e-54 217.2 237 75.9
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.5e-54 217.2 240 74.2
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 1.9e-54 216.9 237 75.1
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 3.3e-54 216.1 249 70.3
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 1.2e-53 214.2 234 73.9
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 1.6e-53 213.8 186 88.7
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 2.1e-53 213.4 238 73.9
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 6.2e-53 211.8 190 87.9
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 6.2e-53 211.8 239 73.6
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 1.1e-52 211.1 240 74.2
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 1.8e-52 210.3 238 73.5
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 2.3e-52 209.9 246 70.7
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 3.1e-52 209.5 238 73.5
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 6.8e-52 208.4 238 71.8
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 6.8e-52 208.4 240 72.9
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.2e-51 207.6 226 75.7
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 1.5e-51 207.2 238 74.4
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 1.5e-51 207.2 234 73.5
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 2.0e-51 206.8 239 73.6
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 2.6e-51 206.5 236 74.6
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 2.6e-51 206.5 237 73.4
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 9.9e-51 204.5 238 71.4
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 9.9e-51 204.5 237 72.6
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 9.9e-51 204.5 228 74.1
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.7e-50 203.8 237 73.8
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 1.7e-50 203.8 238 71.8
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 2.9e-50 203.0 182 87.4
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 2.9e-50 203.0 234 73.9
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 3.7e-50 202.6 232 72.8
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 4.9e-50 202.2 234 73.1
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 6.4e-50 201.8 235 71.9
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 8.4e-50 201.4 231 74.0
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 1.1e-49 201.1 237 72.6
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 1.1e-49 201.1 262 55.7
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.4e-49 200.7 190 85.8
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 1.4e-49 200.7 234 72.6
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.9e-49 200.3 193 83.4
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 1.9e-49 200.3 237 71.7
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.4e-49 199.9 258 48.1
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.2e-49 199.5 190 85.3
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 4.1e-49 199.1 197 82.2
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 4.1e-49 199.1 254 67.7
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 9.2e-49 198.0 243 70.8
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 1.2e-48 197.6 219 75.8
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 2.1e-48 196.8 236 74.2
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 2.7e-48 196.4 202 78.2
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 2.7e-48 196.4 249 59.0
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 3.5e-48 196.1 227 72.7
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 6.0e-48 195.3 244 68.4
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 1.0e-47 194.5 238 71.8
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 1.3e-47 194.1 232 70.7
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 3.0e-47 193.0 237 61.2
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 3.0e-47 193.0 240 71.2
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 5.1e-47 192.2 214 75.2
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 1.9e-46 190.3 235 70.2
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 2.5e-46 189.9 234 72.2
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.5e-46 189.9 234 72.2
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 4.3e-46 189.1 230 72.6
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 1.2e-45 187.6 235 71.5
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.1e-45 186.8 234 72.2
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.1e-45 186.8 190 65.8
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 2.1e-45 186.8 185 82.2
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 4.7e-45 185.7 194 80.4
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 8.1e-45 184.9 258 46.5
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 1.1e-44 184.5 246 67.5
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 1.1e-44 184.5 251 65.3
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 2.4e-44 183.3 238 68.9
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 6.8e-44 181.8 241 68.5
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 6.8e-44 181.8 237 71.3
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 1.2e-43 181.0 182 84.6
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 1.2e-43 181.0 242 67.4
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 2.0e-43 180.3 192 78.6
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.4e-43 179.5 132 70.5
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.4e-43 179.5 132 70.5
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.4e-43 179.1 132 70.5
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 5.8e-43 178.7 241 67.2
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 5.8e-43 178.7 156 62.8
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.8e-43 178.7 133 69.2
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 9.9e-43 177.9 194 78.9
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 1.7e-42 177.2 240 69.2
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.2e-42 176.8 132 68.9
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.4e-42 175.3 132 68.9
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.4e-42 175.3 230 69.6
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 6.4e-42 175.3 190 78.4
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 1.1e-41 174.5 242 68.6
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 2.4e-41 173.3 244 67.2
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 3.2e-41 172.9 242 67.4
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.2e-41 172.6 131 67.9
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 4.2e-41 172.6 156 61.5
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 5.4e-41 172.2 244 67.2
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 9.3e-41 171.4 240 65.8
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.2e-40 171.0 228 50.9
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 2.1e-40 170.2 241 66.4
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 4.6e-40 169.1 251 63.3
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 6.0e-40 168.7 179 82.1
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.9e-39 166.0 156 89.1
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 6.6e-39 165.2 166 83.1
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 8.7e-39 164.9 203 69.5
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.5e-38 164.1 228 50.4
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 7.3e-38 161.8 165 84.2
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 5.3e-36 155.6 121 70.2
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 5.3e-36 155.6 208 47.6
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 5.3e-36 155.6 208 47.6
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.2e-33 146.4 77 92.2
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 3.2e-33 146.4 156 82.7
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 9.3e-33 144.8 123 63.4
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 6.0e-32 142.1 111 66.7
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 2.3e-31 140.2 240 61.7
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 2.5e-30 136.7 232 55.2
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 1.5e-19 100.9 64 70.3
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 2.8e-13 80.1 181 40.9
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 1.4e-12 77.8 115 79.1


User provided reference genes

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