Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.25PL5E Arachis hypogaea HOM05D001047 ORTHO05D000768 1.1e-93 346.7 176 100.0
arahy.Tifrunner.gnm1.ann1.TPQ86D Arachis hypogaea HOM05D001047 ORTHO05D000768 8.8e-88 327.0 176 96.0
Lalb_Chr12g0200421 Lupinus albus HOM05D001047 ORTHO05D000768 4.7e-33 145.2 154 59.7
Lj4g0027867 Lotus japonicus HOM05D001047 ORTHO05D000768 1.4e-32 143.7 176 55.7
Medtr4g124360 Medicago truncatula HOM05D001047 ORTHO05D000768 2.9e-30 136.0 143 59.4
arahy.Tifrunner.gnm1.ann1.EFG4M9 Arachis hypogaea HOM05D001047 ORTHO05D000768 9.2e-29 131.0 175 48.6
arahy.Tifrunner.gnm1.ann1.BEZ7GQ Arachis hypogaea HOM05D001047 ORTHO05D000768 1.7e-27 126.7 175 47.4
Ca_21352_v3 Cicer arietinum L. HOM05D001047 ORTHO05D000768 6.6e-27 124.8 148 54.1
Glyma.13G116100 Glycine max HOM05D001047 ORTHO05D000768 1.2e-25 120.6 155 54.8
Ca_02314_v3 Cicer arietinum L. HOM05D001047 ORTHO05D000768 2.1e-25 119.8 143 53.1
Psat1g016520 Pisum sativum HOM05D001047 ORTHO05D000768 1.4e-24 117.1 143 55.2
Glyma.17G043700 Glycine max HOM05D001047 ORTHO05D000768 1.8e-24 116.7 151 55.0
Lj6g0013412 Lotus japonicus HOM05D001047 ORTHO05D000768 1.8e-24 116.7 121 57.0
TPR.G18015 Trifolium pratense HOM05D001047 ORTHO05D000768 2.4e-24 116.3 134 52.2
TPR.G12661 Trifolium pratense HOM05D001047 ORTHO05D000768 9.0e-24 114.4 153 47.7
Lalb_Chr08g0232941 Lupinus albus HOM05D001047 ORTHO05D000768 1.3e-22 110.5 124 56.5
VMungo1309G1373 Vigna mungo HOM05D001047 ORTHO05D000768 1.1e-21 107.5 121 57.9
Phvul.009G221800 Phaseolus vulgaris HOM05D001047 ORTHO05D000768 1.4e-21 107.1 121 57.0
Medtr2g044910 Medicago truncatula HOM05D001047 ORTHO05D000768 9.3e-21 104.4 146 49.3
Psat4g020200 Pisum sativum HOM05D001047 ORTHO05D000768 1.6e-20 103.6 94 63.8
Glyma.15G184900 Glycine max HOM05D001047 ORTHO05D000768 2.3e-19 99.8 122 55.7
Glyma.09G077500 Glycine max HOM05D001047 ORTHO05D000768 5.1e-19 98.6 122 55.7
VMungo1215G2562 Vigna mungo HOM05D001047 ORTHO05D000768 4.8e-17 92.0 145 51.0
Atru.chr7.1808 Acer truncatum HOM05D001047 ORTHO05D000768 9.0e-16 87.8 183 38.3
Thecc.09G067200 Theobroma cacao HOM05D001047 ORTHO05D000768 1.5e-15 87.0 121 47.9
Duzib150G1532 Durio zibethinus HOM05D001047 ORTHO05D000768 7.6e-15 84.7 122 45.1
Phvul.003G125700 Phaseolus vulgaris HOM05D001047 ORTHO05D000768 7.6e-15 84.7 144 47.2
Gohir.A05G037500 Gossypium hirsutum HOM05D001047 ORTHO05D000768 1.7e-14 83.6 130 41.5
Gohir.D05G039000 Gossypium hirsutum HOM05D001047 ORTHO05D000768 1.7e-14 83.6 119 42.9
Gorai.009G039500 Gossypium raimondii HOM05D001047 ORTHO05D000768 1.7e-14 83.6 119 42.9
PGR142G0155 Punica granatum HOM05D001047 ORTHO05D000768 1.7e-14 83.6 114 48.2
Duzib168G0163 Durio zibethinus HOM05D001047 ORTHO05D000768 2.9e-14 82.8 122 45.1
Eucgr.C00753 Eucalyptus grandis HOM05D001047 ORTHO05D000768 3.8e-14 82.4 110 44.5
Prupe.7G189200 Prunus persica HOM05D001047 ORTHO05D000768 4.9e-14 82.0 126 46.8
MD02G1105900 Malus domestica HOM05D001047 ORTHO05D000768 6.4e-14 81.6 125 46.4
FvH4_1g09690 Fragaria vesca HOM05D001047 ORTHO05D000768 1.9e-13 80.1 115 41.7
FAN19G2610 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.9e-13 80.1 115 41.7
FAN26G1307 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.9e-13 80.1 115 41.7
Ciclev10009025m.g Citrus clementina HOM05D001047 ORTHO05D000768 2.4e-13 79.7 129 40.3
FAN26G1269 Fragaria x ananassa HOM05D001047 ORTHO05D000768 2.4e-13 79.7 115 41.7
BcaC04g19482 Brassica carinata HOM05D001047 ORTHO05D000768 4.2e-13 79.0 119 43.7
C09p55290 Brassica napus HOM05D001047 ORTHO05D000768 4.2e-13 79.0 119 43.7
FAN23G0009 Fragaria x ananassa HOM05D001047 ORTHO05D000768 5.4e-13 78.6 116 41.4
FAN23G0978 Fragaria x ananassa HOM05D001047 ORTHO05D000768 5.4e-13 78.6 116 41.4
Aa31LG4G13350 Aethionema arabicum HOM05D001047 ORTHO05D000768 9.3e-13 77.8 109 44.0
BolC9t58389H Brassica oleracea HOM05D001047 ORTHO05D000768 2.1e-12 76.6 107 44.9
Sp6g23620 Schrenkiella parvula HOM05D001047 ORTHO05D000768 2.1e-12 76.6 176 37.5
Thhalv10013955m.g Eutrema salsugineum HOM05D001047 ORTHO05D000768 2.7e-12 76.3 167 40.1
FAN28G1146 Fragaria x ananassa HOM05D001047 ORTHO05D000768 3.5e-12 75.9 116 39.7
Gohir.D07G018200 Gossypium hirsutum HOM05D001047 ORTHO05D000768 4.6e-12 75.5 124 41.9
Gorai.001G018800 Gossypium raimondii HOM05D001047 ORTHO05D000768 4.6e-12 75.5 124 41.9
Sabra06G0167500 Salix brachista HOM05D001047 ORTHO05D000768 4.6e-12 75.5 124 42.7
Manes.03G055200 Manihot esculenta HOM05D001047 ORTHO05D000768 6.0e-12 75.1 122 45.1
BraA10t43991Z Brassica rapa HOM05D001047 ORTHO05D000768 1.3e-11 73.9 122 43.4
MD15G1225800 Malus domestica HOM05D001047 ORTHO05D000768 1.8e-11 73.6 118 44.9
Potri.006G217200 Populus trichocarpa HOM05D001047 ORTHO05D000768 3.0e-11 72.8 127 43.3
Manes.16G088300 Manihot esculenta HOM05D001047 ORTHO05D000768 3.9e-11 72.4 123 44.7
Potri.018G047100 Populus trichocarpa HOM05D001047 ORTHO05D000768 3.9e-11 72.4 124 41.9
A10p19160 Brassica napus HOM05D001047 ORTHO05D000768 5.1e-11 72.0 110 44.5
AT5G20900 Arabidopsis thaliana HOM05D001047 ORTHO05D000768 8.7e-11 71.2 107 43.0
BolC2t07081H Brassica oleracea HOM05D001047 ORTHO05D000768 8.7e-11 71.2 107 43.0
CARHR191950 Cardamine hirsuta HOM05D001047 ORTHO05D000768 8.7e-11 71.2 110 44.5
Gohir.A07G018400 Gossypium hirsutum HOM05D001047 ORTHO05D000768 1.5e-10 70.5 124 39.5
RcHm_v2.0_Chr2g0096551 Rosa chinensis HOM05D001047 ORTHO05D000768 1.9e-10 70.1 118 37.3
AL6G32450 Arabidopsis lyrata HOM05D001047 ORTHO05D000768 2.5e-10 69.7 107 43.0
C02p10500 Brassica napus HOM05D001047 ORTHO05D000768 4.3e-10 68.9 176 36.4
CANSAT56G2853 Cannabis sativa HOM05D001047 ORTHO05D000768 4.3e-10 68.9 122 42.6
BNapus_Darmor_BZH_scaffold_38p01280 Brassica napus HOM05D001047 ORTHO05D000768 7.4e-10 68.2 176 36.4
Carub.0006s1919 Capsella rubella HOM05D001047 ORTHO05D000768 1.3e-09 67.4 107 42.1
BcaC03g13812 Brassica carinata HOM05D001047 ORTHO05D000768 2.1e-09 66.6 162 35.8
BraA02t05602Z Brassica rapa HOM05D001047 ORTHO05D000768 2.1e-09 66.6 108 42.6
THA.LOC104815065 Tarenaya hassleriana HOM05D001047 ORTHO05D000768 2.8e-09 66.2 125 40.0
BcaB05g22803 Brassica carinata HOM05D001047 ORTHO05D000768 8.1e-09 64.7 108 41.7
AL5G21390 Arabidopsis lyrata HOM05D001047 ORTHO05D000768 1.8e-08 63.5 107 42.1
ATR0006G052 Amborella trichopoda HOM05D001047 ORTHO05D000768 9.0e-08 61.2 112 42.0
THA.LOC104799600 Tarenaya hassleriana HOM05D001047 ORTHO05D000768 9.0e-08 61.2 118 38.1
Lalb_Chr13g0299081 Lupinus albus HOM05D001047 ORTHO05D000768 1.2e-07 60.8 70 48.6
Zm00001eb056840 Zea mays HOM05D001047 ORTHO05D000768 1.2e-07 60.8 117 38.5
Zm00001eb432370 Zea mays HOM05D001047 ORTHO05D000768 1.2e-07 60.8 117 38.5
Zm00001eb164160 Zea mays HOM05D001047 ORTHO05D000768 4.5e-07 58.9 117 37.6
Zm00001eb068050 Zea mays HOM05D001047 ORTHO05D000768 7.6e-07 58.2 117 36.8
TWI63G0579 Tripterygium wilfordii HOM05D001047 ORTHO05D000768 1.7e-06 57.0 117 40.2
CANSAT56G0578 Cannabis sativa HOM05D001047 ORTHO05D000768 2.2e-06 56.6 99 45.5
CDE04G1925 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 2.2e-06 56.6 154 31.2
AT3G43440 Arabidopsis thaliana HOM05D001047 ORTHO05D000768 4.9e-06 55.5 108 37.0
SEGI_14779 Sequoiadendron giganteum HOM05D001047 ORTHO05D000768 8.4e-06 54.7 117 38.5


User provided reference genes

Program Settings