Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1V5DEN Arachis hypogaea HOM05D001120 ORTHO05D002943 6.2e-126 454.1 230 100.0
arahy.Tifrunner.gnm1.ann1.M466US Arachis hypogaea HOM05D027822 ORTHO05D086560 1.1e-42 177.6 157 65.6
arahy.Tifrunner.gnm1.ann1.V6NF3H Arachis hypogaea HOM05D027822 ORTHO05D007129 2.3e-40 169.9 161 66.5
arahy.Tifrunner.gnm1.ann1.A6JJY3 Arachis hypogaea HOM05D000081 ORTHO05D007129 2.8e-33 146.4 100 83.0
arahy.Tifrunner.gnm1.ann1.BDNL9H Arachis hypogaea HOM05D001120 ORTHO05D002943 1.4e-32 144.1 77 85.7
arahy.Tifrunner.gnm1.ann1.A2YXVA Arachis hypogaea HOM05D001120 ORTHO05D002943 5.1e-27 125.6 65 87.7
arahy.Tifrunner.gnm1.ann1.35XLXM Arachis hypogaea HOM05D001120 ORTHO05D002943 5.6e-26 122.1 77 74.0
arahy.Tifrunner.gnm1.ann1.W17802 Arachis hypogaea HOM05D001120 ORTHO05D002943 5.6e-26 122.1 77 74.0
arahy.Tifrunner.gnm1.ann1.Q1XR2M Arachis hypogaea HOM05D001120 ORTHO05D002943 8.1e-25 118.2 65 84.6
arahy.Tifrunner.gnm1.ann1.ZX35QI Arachis hypogaea HOM05D001120 ORTHO05D002943 2.4e-24 116.7 65 83.1
arahy.Tifrunner.gnm1.ann1.X1WI1D Arachis hypogaea HOM05D001120 ORTHO05D002943 7.6e-23 111.7 61 82.0
arahy.Tifrunner.gnm1.ann1.XVWX7G Arachis hypogaea HOM05D001120 ORTHO05D002943 1.3e-22 110.9 110 56.4
arahy.Tifrunner.gnm1.ann1.E4F5HJ Arachis hypogaea HOM05D001120 ORTHO05D002943 5.4e-21 105.5 65 80.0
arahy.Tifrunner.gnm1.ann1.2Y8ZXL Arachis hypogaea HOM05D001120 ORTHO05D002943 3.5e-20 102.8 51 88.2
arahy.Tifrunner.gnm1.ann1.16TVZ1 Arachis hypogaea HOM05D001120 ORTHO05D002943 7.8e-20 101.7 69 76.8
arahy.Tifrunner.gnm1.ann1.0ZDL97 Arachis hypogaea HOM05D001120 ORTHO05D002943 1.0e-19 101.3 69 76.8
arahy.Tifrunner.gnm1.ann1.I9RXZ3 Arachis hypogaea HOM05D001120 ORTHO05D002943 3.0e-19 99.8 79 64.6
arahy.Tifrunner.gnm1.ann1.29B9X6 Arachis hypogaea HOM05D027822 ORTHO05D001113 1.5e-18 97.4 66 80.3
Ciclev10004987m.g Citrus clementina HOM05D001120 ORTHO05D002943 4.0e-16 89.4 84 54.8
Phvul.004G125600 Phaseolus vulgaris HOM05D001120 ORTHO05D002943 5.3e-16 89.0 148 42.6
Manes.06G139500 Manihot esculenta HOM05D001120 ORTHO05D002943 1.5e-15 87.4 69 65.2
Psat1g105640 Pisum sativum HOM05D001120 ORTHO05D002943 1.5e-15 87.4 87 52.9
Lj6g0021937 Lotus japonicus HOM05D001120 ORTHO05D002943 2.6e-15 86.7 75 62.7
Medtr3g006860 Medicago truncatula HOM05D001120 ORTHO05D002943 2.6e-15 86.7 75 57.3
Medtr6g463380 Medicago truncatula HOM05D001120 ORTHO05D002943 5.8e-15 85.5 75 56.0
Nn1g01163 Nelumbo nucifera HOM05D001120 ORTHO05D002943 5.8e-15 85.5 88 50.0
Hma1.2p1_0488F.1_g163780 Hydrangea macrophylla HOM05D001120 ORTHO05D002943 7.6e-15 85.1 89 52.8
Ca_19532_v3 Cicer arietinum L. HOM05D001120 ORTHO05D002943 9.9e-15 84.7 60 70.0
arahy.Tifrunner.gnm1.ann1.B50YZX Arachis hypogaea HOM05D001120 ORTHO05D002943 1.3e-14 84.3 131 42.0
VMungo0464G0810 Vigna mungo HOM05D001120 ORTHO05D002943 1.3e-14 84.3 148 40.5
Haze_13809 Corylus avellana HOM05D001120 ORTHO05D002943 1.7e-14 84.0 87 56.3
PGR042G0858 Punica granatum HOM05D001120 ORTHO05D002943 1.7e-14 84.0 67 61.2
TAR375G0839 Trochodendron aralioides HOM05D001120 ORTHO05D002943 1.7e-14 84.0 110 47.3
Lj2g0010051 Lotus japonicus HOM05D001120 ORTHO05D002943 2.2e-14 83.6 60 68.3
Glyma.09G151800 Glycine max HOM05D001120 ORTHO05D002943 3.8e-14 82.8 75 58.7
Cfa008242 Carpinus fangiana HOM05D001120 ORTHO05D004313 4.9e-14 82.4 87 55.2
Sed0024680 Sechium edule HOM05D001120 ORTHO05D002943 4.9e-14 82.4 103 51.5
Lalb_Chr25g0289251 Lupinus albus HOM05D001120 ORTHO05D002943 6.4e-14 82.0 90 53.3
MELO3C006846.2 Cucumis melo HOM05D001120 ORTHO05D002943 8.4e-14 81.6 58 69.0
Dinv28521 Davidia involucrata HOM05D001120 ORTHO05D002943 1.1e-13 81.3 146 43.8
ClCG05G007580 Citrullus lanatus HOM05D001120 ORTHO05D002943 2.4e-13 80.1 75 58.7
Potri.012G131100 Populus trichocarpa HOM05D001120 ORTHO05D002943 2.4e-13 80.1 58 67.2
Sabra12G0098600 Salix brachista HOM05D001120 ORTHO05D004313 2.4e-13 80.1 58 67.2
THA.LOC104806528 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 2.4e-13 80.1 66 62.1
Cpa.g.sc3.252 Carica papaya HOM05D001120 ORTHO05D002943 3.2e-13 79.7 75 57.3
Cc02_g03730 Coffea canephora HOM05D001120 ORTHO05D002943 3.2e-13 79.7 75 56.0
CsaV3_3G016470 Cucumis sativus L. HOM05D001120 ORTHO05D002943 3.2e-13 79.7 73 58.9
Solyc03g007000.4 Solanum lycopersicum HOM05D001120 ORTHO05D002943 3.2e-13 79.7 75 56.0
Sopen03g003000 Solanum pennellii HOM05D001120 ORTHO05D002943 3.2e-13 79.7 75 56.0
Sc19g0001810 Simmondsia chinensis HOM05D001120 ORTHO05D002943 4.2e-13 79.3 60 63.3
CSS0024775 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 9.3e-13 78.2 75 58.7
QL12p039198 Quercus lobata HOM05D001120 ORTHO05D002943 9.3e-13 78.2 58 69.0
Actinidia13529 Actinidia chinensis HOM05D001120 ORTHO05D002943 1.2e-12 77.8 58 65.5
Nitab4.5_0000072g0150 Nicotiana tabacum HOM05D001120 ORTHO05D002943 1.2e-12 77.8 58 67.2
Nitab4.5_0006353g0020 Nicotiana tabacum HOM05D001120 ORTHO05D002943 1.2e-12 77.8 58 69.0
EL10Ac3g05764 Beta vulgaris HOM05D001120 ORTHO05D002943 1.6e-12 77.4 88 48.9
CiPaw.03G098500 Carya illinoinensis HOM05D001120 ORTHO05D002943 1.6e-12 77.4 81 54.3
Lj8C35G5 Lonicera japonica HOM05D001120 ORTHO05D002943 2.1e-12 77.0 59 66.1
PGSC0003DMG400031017 Solanum tuberosum HOM05D001120 ORTHO05D002943 2.1e-12 77.0 75 54.7
DCAR_018133 Daucus carota HOM05D001120 ORTHO05D002943 2.7e-12 76.6 75 53.3
CANSAT21G0609 Cannabis sativa HOM05D001120 ORTHO05D002943 3.5e-12 76.3 90 46.7
CANSAT21G2509 Cannabis sativa HOM05D001120 ORTHO05D002943 3.5e-12 76.3 90 46.7
Ah.13g067550 Amaranthus hybridus HOM05D001120 ORTHO05D002943 4.6e-12 75.9 81 51.9
CSS0048333 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 4.6e-12 75.9 58 62.1
FvH4_7g28431 Fragaria vesca HOM05D001120 ORTHO05D002943 4.6e-12 75.9 73 53.4
TWI23G0697 Tripterygium wilfordii HOM05D001120 ORTHO05D002943 4.6e-12 75.9 58 63.8
AT5G51740 Arabidopsis thaliana HOM05D001120 ORTHO05D002943 6.0e-12 75.5 88 45.5
FAN06G3100 Fragaria x ananassa HOM05D001120 ORTHO05D002943 6.0e-12 75.5 73 52.1
FAN10G1418 Fragaria x ananassa HOM05D001120 ORTHO05D002943 6.0e-12 75.5 73 52.1
CAN.G1409.5 Capsicum annuum HOM05D001120 ORTHO05D002943 7.9e-12 75.1 75 53.3
Thhalv10013554m.g Eutrema salsugineum HOM05D001120 ORTHO05D002943 7.9e-12 75.1 85 48.2
Gorai.001G047100 Gossypium raimondii HOM05D001120 ORTHO05D002943 7.9e-12 75.1 98 44.9
CDE11G0287 Ceratophyllum demersum HOM05D001120 ORTHO05D002943 1.0e-11 74.7 55 63.6
Dinv08003 Davidia involucrata HOM05D001120 ORTHO05D002943 1.0e-11 74.7 75 57.3
Gohir.A07G039900 Gossypium hirsutum HOM05D001120 ORTHO05D002943 1.0e-11 74.7 55 65.5
Medtr6g079410 Medicago truncatula HOM05D001120 ORTHO05D002943 1.0e-11 74.7 56 60.7
PSO478G4258 Papaver somniferum HOM05D001120 ORTHO05D002943 1.8e-11 73.9 60 60.0
Aa31LG3G8190 Aethionema arabicum HOM05D001120 ORTHO05D002943 2.3e-11 73.6 51 66.7
Eucgr.A02865 Eucalyptus grandis HOM05D001120 ORTHO05D002943 2.3e-11 73.6 55 63.6
FAN06G0604 Fragaria x ananassa HOM05D001120 ORTHO05D002943 2.3e-11 73.6 73 52.1
Peaxi162Scf00192g00835 Petunia axillaris HOM05D001120 ORTHO05D002943 2.3e-11 73.6 58 62.1
CSS0048489 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 3.0e-11 73.2 58 60.3
PSO782G3773 Papaver somniferum HOM05D001120 ORTHO05D002943 3.0e-11 73.2 60 58.3
arahy.Tifrunner.gnm1.ann1.5041YP Arachis hypogaea HOM05D000081 ORTHO05D007129 3.9e-11 72.8 100 52.0
MSTRG.27147 Avicennia marina HOM05D001120 ORTHO05D002943 3.9e-11 72.8 59 59.3
MBI12_g37712_MAGBIO Magnolia biondii HOM05D001120 ORTHO05D002943 3.9e-11 72.8 60 56.7
unitig_52.g17752 Utricularia gibba HOM05D001120 ORTHO05D002943 5.1e-11 72.4 58 58.6
COL.COLO4_14203 Corchorus olitorius HOM05D001120 ORTHO05D004313 6.7e-11 72.0 66 51.5
PSO478G1970 Papaver somniferum HOM05D001120 ORTHO05D002943 6.7e-11 72.0 60 55.0
PSO782G1143 Papaver somniferum HOM05D001120 ORTHO05D002943 6.7e-11 72.0 60 55.0
Prupe.2G284300 Prunus persica HOM05D001120 ORTHO05D002943 6.7e-11 72.0 55 65.5
FAN01G0606 Fragaria x ananassa HOM05D001120 ORTHO05D002943 8.7e-11 71.6 73 50.7
FAN03G1503 Fragaria x ananassa HOM05D001120 ORTHO05D002943 8.7e-11 71.6 73 50.7
FAN03G1927 Fragaria x ananassa HOM05D001120 ORTHO05D002943 8.7e-11 71.6 73 50.7
Lsat_1_v5_gn_8_7961 Lactuca sativa HOM05D001120 ORTHO05D002943 8.7e-11 71.6 86 44.2
Aqoxy7G00546 Aquilegia oxysepala HOM05D001120 ORTHO05D002943 1.1e-10 71.2 157 32.5
CARHR264600 Cardamine hirsuta HOM05D001120 ORTHO05D002943 1.1e-10 71.2 86 39.5
vmacro06756 Vaccinium macrocarpon HOM05D001120 ORTHO05D002943 1.1e-10 71.2 75 49.3
BcaB08g35521 Brassica carinata HOM05D001120 ORTHO05D002943 1.5e-10 70.9 51 60.8
BcaC04g20640 Brassica carinata HOM05D001120 ORTHO05D002943 1.5e-10 70.9 51 60.8
A10p09590 Brassica napus HOM05D001120 ORTHO05D002943 1.5e-10 70.9 51 60.8
C09p41150 Brassica napus HOM05D001120 ORTHO05D002943 1.5e-10 70.9 51 60.8
BolC9t56993H Brassica oleracea HOM05D001120 ORTHO05D002943 1.5e-10 70.9 51 60.8
BraA10t43035Z Brassica rapa HOM05D001120 ORTHO05D002943 1.5e-10 70.9 51 60.8
Gohir.A09G178700 Gossypium hirsutum HOM05D001120 ORTHO05D002943 1.5e-10 70.9 57 57.9
Glyma.12G117400 Glycine max HOM05D001120 ORTHO05D002943 1.9e-10 70.5 75 53.3
Rhsim03G0173300 Rhododendron simsii HOM05D001120 ORTHO05D002943 1.9e-10 70.5 55 61.8
Thecc.03G163900 Theobroma cacao HOM05D001120 ORTHO05D002943 1.9e-10 70.5 98 41.8
HPP92_007982 Vanilla planifolia HOM05D001120 ORTHO05D002943 1.9e-10 70.5 55 60.0
AL8G26010 Arabidopsis lyrata HOM05D001120 ORTHO05D002943 2.5e-10 70.1 53 60.4
MD01G1187900 Malus domestica HOM05D001120 ORTHO05D002943 2.5e-10 70.1 58 60.3
Gohir.D09G174300 Gossypium hirsutum HOM05D001120 ORTHO05D002943 3.3e-10 69.7 57 57.9
Gorai.006G196300 Gossypium raimondii HOM05D001120 ORTHO05D002943 3.3e-10 69.7 57 57.9
AUR62021289 Chenopodium quinoa HOM05D001120 ORTHO05D002943 5.6e-10 68.9 75 50.7
MD07G1015000 Malus domestica HOM05D001120 ORTHO05D002943 5.6e-10 68.9 58 56.9
RcHm_v2.0_Chr1g0375401 Rosa chinensis HOM05D001120 ORTHO05D002943 5.6e-10 68.9 75 49.3
RcHm_v2.0_Chr4g0391111 Rosa chinensis HOM05D001120 ORTHO05D002943 5.6e-10 68.9 58 56.9
Hund11789 Selenicereus undatus HOM05D001120 ORTHO05D002943 1.3e-09 67.8 60 55.0
AUR62016080 Chenopodium quinoa HOM05D001120 ORTHO05D002943 1.6e-09 67.4 75 49.3
SEGI_40718 Sequoiadendron giganteum HOM05D001120 ORTHO05D002943 2.8e-09 66.6 111 37.8
GSVIVG01018475001 Vitis vinifera HOM05D001120 ORTHO05D002943 2.8e-09 66.6 51 64.7
Hund04661 Selenicereus undatus HOM05D001120 ORTHO05D002943 3.7e-09 66.2 55 60.0
ATR0757G141 Amborella trichopoda HOM05D001120 ORTHO05D002943 4.8e-09 65.9 52 61.5
Duzib084G0753 Durio zibethinus HOM05D001120 ORTHO05D002943 4.8e-09 65.9 163 30.7
HanXRQChr05g0141341 Helianthus annuus HOM05D001120 ORTHO05D002943 4.8e-09 65.9 75 48.0
Glyma.06G289600 Glycine max HOM05D001120 ORTHO05D002943 2.4e-08 63.5 75 48.0
RcHm_v2.0_Chr2g0123811 Rosa chinensis HOM05D001120 ORTHO05D002943 2.4e-08 63.5 60 51.7
ECA233G6122 Erigeron canadensis HOM05D001120 ORTHO05D002943 4.0e-08 62.8 55 54.5
Rhsim09G0194100 Rhododendron simsii HOM05D001120 ORTHO05D002943 4.0e-08 62.8 58 51.7
Migut.F01165 Erythranthe guttata HOM05D001120 ORTHO05D002943 5.3e-08 62.4 58 46.6
Lsat_1_v5_gn_8_157341 Lactuca sativa HOM05D001120 ORTHO05D002943 5.3e-08 62.4 108 39.8
arahy.Tifrunner.gnm1.ann1.L59R0S Arachis hypogaea HOM05D001055 ORTHO05D000867 6.9e-08 62.0 37 81.1
Phvul.011G124600 Phaseolus vulgaris HOM05D001120 ORTHO05D002943 6.9e-08 62.0 86 43.0
Oeu021740.1 Olea europaea HOM05D001120 ORTHO05D002943 9.0e-08 61.6 64 53.1
MD07G1260500 Malus domestica HOM05D001120 ORTHO05D002943 1.2e-07 61.2 55 56.4
THA.LOC104825185 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 3.4e-07 59.7 53 52.8
THA.LOC104811503 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 5.8e-07 58.9 53 54.7
Os02g0735100 Oryza sativa ssp. japonica HOM05D001120 ORTHO05D002943 1.0e-06 58.2 78 41.0
RcHm_v2.0_Chr4g0406741 Rosa chinensis HOM05D001120 ORTHO05D002943 1.3e-06 57.8 53 52.8
THA.LOC104825079 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 1.3e-06 57.8 55 49.1
SGA_v2.0_scaffold10G05437 Striga asiatica HOM05D001120 ORTHO05D002943 1.7e-06 57.4 50 56.0
PSO210G7235 Papaver somniferum HOM05D001120 ORTHO05D002943 2.2e-06 57.0 70 41.4
VMungo1127G0245 Vigna mungo HOM05D001120 ORTHO05D002943 2.9e-06 56.6 55 52.7
FvH4_7g28432 Fragaria vesca HOM05D001120 ORTHO05D002943 3.8e-06 56.2 51 49.0
FAN06G0193 Fragaria x ananassa HOM05D001120 ORTHO05D002943 3.8e-06 56.2 51 49.0
FAN06G2540 Fragaria x ananassa HOM05D001120 ORTHO05D002943 3.8e-06 56.2 51 49.0
Carub.0008s1176 Capsella rubella HOM05D001120 ORTHO05D002943 6.4e-06 55.5 41 63.4


User provided reference genes

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