Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 2.6e-74 282.0 140 100.0
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 1.2e-71 273.1 147 94.6
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 2.0e-63 245.7 137 89.1
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 2.0e-63 245.7 137 90.5
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 2.7e-63 245.4 137 89.8
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 1.7e-62 242.7 137 88.3
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 2.3e-62 242.3 137 89.1
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 3.0e-62 241.9 140 86.4
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 5.0e-62 241.1 137 87.6
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 1.9e-61 239.2 136 88.2
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 3.3e-61 238.4 137 88.3
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 1.6e-60 236.1 142 83.1
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 2.8e-60 235.3 137 83.9
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 6.2e-60 234.2 140 82.9
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 2.3e-59 232.3 136 82.4
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 2.3e-59 232.3 137 83.2
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 8.9e-59 230.3 137 81.8
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 8.9e-59 230.3 137 81.8
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 8.9e-59 230.3 137 81.8
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 8.9e-59 230.3 140 80.7
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 1.2e-58 229.9 144 81.9
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 1.5e-58 229.6 137 81.8
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.0e-58 229.2 137 82.5
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.0e-58 229.2 137 82.5
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 3.4e-58 228.4 140 82.1
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 5.8e-58 227.6 137 81.8
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 5.8e-58 227.6 137 81.8
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 5.8e-58 227.6 143 79.7
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 9.8e-58 226.9 137 81.8
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 2.9e-57 225.3 139 78.4
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 3.7e-57 224.9 135 82.2
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.7e-57 224.9 137 81.0
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 4.9e-57 224.6 137 81.0
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 6.4e-57 224.2 128 83.6
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 6.4e-57 224.2 139 79.1
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 1.9e-56 222.6 137 81.8
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 1.9e-56 222.6 138 81.9
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 3.2e-56 221.9 140 78.6
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 3.2e-56 221.9 138 81.2
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 7.1e-56 220.7 148 76.4
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 9.2e-56 220.3 137 79.6
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 9.2e-56 220.3 140 79.3
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 1.2e-55 219.9 137 78.8
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 1.2e-55 219.9 135 81.5
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 2.1e-55 219.2 137 78.1
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 2.1e-55 219.2 140 77.9
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 4.6e-55 218.0 140 74.3
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 4.6e-55 218.0 137 75.9
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 4.6e-55 218.0 163 69.3
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 7.8e-55 217.2 137 79.6
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 7.8e-55 217.2 128 80.5
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 1.0e-54 216.9 144 78.5
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.0e-54 216.9 137 79.6
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 1.3e-54 216.5 137 80.3
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 2.3e-54 215.7 133 78.2
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 3.0e-54 215.3 133 76.7
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 3.9e-54 214.9 137 80.3
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 3.9e-54 214.9 140 75.0
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 3.9e-54 214.9 140 75.0
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 3.9e-54 214.9 140 75.0
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 5.1e-54 214.5 137 79.6
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 5.1e-54 214.5 137 79.6
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 6.6e-54 214.2 140 72.9
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 8.6e-54 213.8 137 79.6
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 8.6e-54 213.8 137 79.6
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 8.6e-54 213.8 137 79.6
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 1.1e-53 213.4 137 79.6
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 1.1e-53 213.4 137 79.6
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 1.1e-53 213.4 137 79.6
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 2.5e-53 212.2 137 75.9
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 5.6e-53 211.1 137 78.1
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 5.6e-53 211.1 136 76.5
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 7.3e-53 210.7 137 78.1
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 7.3e-53 210.7 137 78.1
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 7.3e-53 210.7 138 77.5
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 9.5e-53 210.3 140 78.6
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 2.8e-52 208.8 137 74.5
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 2.8e-52 208.8 127 78.0
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 3.6e-52 208.4 137 73.0
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 4.7e-52 208.0 139 71.9
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 8.1e-52 207.2 123 82.9
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 8.1e-52 207.2 137 77.4
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 1.1e-51 206.8 137 75.9
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 1.1e-51 206.8 139 75.5
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 1.8e-51 206.1 123 82.1
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 3.1e-51 205.3 137 71.5
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 5.2e-51 204.5 168 67.3
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 8.9e-51 203.8 137 75.9
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 1.5e-50 203.0 139 71.2
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 4.4e-50 201.4 132 75.0
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 9.9e-50 200.3 123 78.9
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 3.8e-49 198.4 125 76.8
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 3.8e-49 198.4 132 74.2
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 8.4e-49 197.2 124 77.4
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 1.1e-48 196.8 142 71.8
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 1.1e-48 196.8 137 74.5
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 1.9e-48 196.1 135 69.6
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 3.2e-48 195.3 127 72.4
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 9.2e-48 193.7 128 71.9
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 3.5e-47 191.8 137 74.5
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 3.9e-46 188.3 125 76.0
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 3.9e-46 188.3 125 76.0
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 1.9e-45 186.0 124 71.8
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 3.6e-44 181.8 113 82.3
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 3.1e-43 178.7 110 81.8
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.1e-43 178.7 110 81.8
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 5.2e-43 177.9 121 74.4
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 8.9e-43 177.2 106 83.0
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 1.2e-42 176.8 110 81.8
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 2.6e-42 175.6 113 77.0
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 4.4e-42 174.9 146 64.4
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 4.9e-41 171.4 112 75.9
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 8.4e-41 170.6 111 78.4
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 1.4e-40 169.9 127 70.1
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 1.9e-40 169.5 134 67.2
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 1.9e-37 159.5 110 70.0
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 3.3e-37 158.7 122 63.1
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 1.3e-36 156.8 110 73.6
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 2.1e-36 156.0 140 57.1
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 5.3e-35 151.4 124 59.7
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 9.0e-35 150.6 111 65.8
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 1.5e-34 149.8 140 63.6
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 4.9e-33 144.8 83 84.3
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 6.4e-33 144.4 87 81.6
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 1.3e-30 136.7 83 80.7
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 5.1e-30 134.8 181 45.3
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 1.1e-29 133.7 86 75.6
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 2.1e-28 129.4 83 77.1
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 2.8e-28 129.0 83 78.3
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 4.8e-28 128.3 104 58.7
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 2.0e-26 122.9 120 56.7
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 6.4e-25 117.9 128 52.3
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 1.1e-24 117.1 65 84.6
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 2.4e-24 115.9 98 65.3
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 4.2e-24 115.2 73 76.7
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 7.1e-24 114.4 114 50.0
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 2.1e-23 112.8 101 61.4
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 1.1e-21 107.1 64 75.0
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 1.5e-18 96.7 60 78.3
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 3.4e-18 95.5 57 82.5
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 4.5e-18 95.1 107 46.7
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.1e-16 90.5 55 78.2
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 1.1e-16 90.5 122 42.6
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 9.3e-16 87.4 53 79.2
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 2.1e-15 86.3 62 66.1
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 4.6e-15 85.1 60 75.0
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 7.9e-15 84.3 60 75.0
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 8.7e-14 80.9 77 58.4
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 9.6e-13 77.4 44 81.8
Cre16.g657000 Chlamydomonas reinhardtii HOM05D005002 ORTHO05D006016 3.1e-11 72.4 122 36.9
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 2.5e-08 62.8 84 48.8
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 2.5e-08 62.8 42 73.8
SEGI_34318 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 7.2e-08 61.2 43 67.4


User provided reference genes

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