Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 0.0e+00 1126.7 571 100.0
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 0.0e+00 1109.4 571 97.7
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 1.9e-232 809.3 585 73.0
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.6e-226 789.6 498 78.9
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.3e-225 786.6 500 78.6
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.5e-224 783.1 502 77.7
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 7.2e-224 780.8 502 77.1
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 7.2e-224 780.8 496 79.0
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 2.7e-223 778.9 504 77.6
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 2.7e-223 778.9 576 69.6
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.7e-220 768.5 504 76.0
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 5.3e-219 764.6 500 74.4
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.2e-216 755.4 584 67.1
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 5.5e-216 754.6 496 77.4
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 5.5e-216 754.6 488 75.4
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 4.0e-214 748.4 556 68.9
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 5.2e-214 748.0 517 72.1
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 3.7e-212 741.9 522 71.5
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 1.4e-211 740.0 520 71.3
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 2.4e-211 739.2 558 67.4
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 1.3e-209 733.4 512 71.3
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 1.3e-209 733.4 503 71.8
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 2.3e-209 732.6 565 66.0
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 6.6e-209 731.1 561 66.5
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.5e-208 729.9 500 71.0
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 1.5e-208 729.9 586 64.8
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 7.2e-208 727.6 569 66.1
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 7.2e-208 727.6 569 65.0
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.1e-207 726.1 502 71.9
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 3.6e-207 725.3 504 72.8
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 6.1e-207 724.5 500 71.4
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 6.1e-207 724.5 511 70.5
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.4e-206 723.4 520 70.0
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.4e-206 723.4 500 72.2
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 1.4e-206 723.4 570 65.6
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.8e-206 723.0 569 65.6
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.8e-206 723.0 519 68.4
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 2.3e-206 722.6 506 70.2
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 3.0e-206 722.2 586 64.8
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 5.2e-206 721.5 518 70.1
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 5.2e-206 721.5 573 65.4
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 5.2e-206 721.5 572 64.7
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 8.9e-206 720.7 518 69.3
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.5e-205 719.9 523 68.5
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 2.0e-205 719.5 520 68.1
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 2.6e-205 719.2 518 69.3
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 2.4e-203 712.6 510 71.0
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 3.2e-203 712.2 570 65.8
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 5.4e-203 711.4 504 70.0
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 7.0e-203 711.1 500 71.0
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 7.0e-203 711.1 570 64.0
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 1.2e-202 710.3 568 63.9
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 2.7e-202 709.1 495 71.1
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 7.8e-202 707.6 517 68.9
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 1.0e-201 707.2 573 62.7
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 1.7e-201 706.4 503 70.2
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.7e-201 706.4 498 70.1
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 5.0e-201 704.9 516 67.2
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 8.6e-201 704.1 518 68.9
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 5.6e-200 701.4 521 68.3
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 7.3e-200 701.0 517 68.3
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 7.3e-200 701.0 495 70.5
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.6e-199 699.9 502 67.7
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.1e-199 699.5 502 69.5
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 2.8e-199 699.1 555 66.8
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 4.7e-199 698.4 498 69.5
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 6.1e-199 698.0 502 68.5
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.0e-198 697.2 571 62.5
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.0e-198 697.2 566 63.6
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 1.0e-198 697.2 576 64.1
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.4e-198 696.8 518 68.1
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.4e-198 696.8 502 70.1
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 2.3e-198 696.0 503 68.0
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 5.2e-198 694.9 574 62.4
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 8.9e-198 694.1 502 66.9
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 1.2e-197 693.7 503 67.4
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 1.2e-197 693.7 564 63.7
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 9.8e-197 690.6 502 67.7
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 9.8e-197 690.6 502 67.7
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 2.2e-196 689.5 502 66.9
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.4e-195 686.8 502 67.3
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 3.2e-195 685.6 517 67.5
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 4.1e-195 685.3 502 67.1
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 1.2e-194 683.7 502 67.1
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.2e-194 683.7 618 59.4
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 1.0e-193 680.6 488 69.3
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 6.6e-193 677.9 580 63.3
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.6e-193 677.9 495 68.7
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.6e-193 677.9 495 68.7
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.5e-192 676.8 495 68.7
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.5e-192 676.8 508 66.5
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 1.9e-192 676.4 500 68.4
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 5.6e-192 674.9 504 67.3
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.2e-191 673.7 564 62.4
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.6e-191 673.3 568 61.3
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.4e-190 670.2 518 66.4
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 2.3e-190 669.5 490 70.0
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.2e-189 667.2 498 67.3
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.5e-189 666.8 573 62.5
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 2.6e-189 666.0 568 59.5
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 3.4e-189 665.6 502 64.9
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 5.8e-189 664.8 502 64.9
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 9.8e-189 664.1 493 69.2
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 1.4e-187 660.2 503 66.8
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.0e-185 654.1 484 66.7
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.9e-185 652.1 491 66.0
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 6.6e-185 651.4 497 66.4
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 6.6e-185 651.4 571 59.9
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.6e-181 639.4 573 60.4
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 7.6e-181 637.9 495 65.5
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.1e-179 634.0 657 52.7
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 7.1e-171 604.7 556 59.2
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.1e-167 593.2 493 60.6
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 2.2e-164 583.2 503 61.2
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 4.2e-163 578.9 536 59.7
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 6.6e-161 571.6 392 72.7
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.2e-157 560.8 395 72.2
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 1.9e-152 543.5 420 66.2
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 2.5e-147 526.6 561 50.3
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.0e-145 519.6 521 56.8
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 2.5e-144 516.5 488 54.1
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 1.2e-141 507.7 391 65.7
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 3.4e-141 506.1 495 53.7
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.7e-140 503.8 486 54.3
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.9e-137 492.7 390 65.4
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 3.3e-136 489.6 338 70.1
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.4e-134 483.4 502 52.2
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 2.9e-132 476.5 410 62.0
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 8.8e-129 464.9 364 65.4
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 6.1e-122 442.2 317 69.7
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 1.3e-119 434.5 311 70.4
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 8.8e-113 411.8 388 58.5
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.7e-108 397.5 511 45.0
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 1.2e-106 391.3 219 87.2
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 1.6e-106 391.0 245 75.9
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 4.8e-103 379.4 507 43.6
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 2.8e-95 353.6 215 78.1
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 7.7e-93 345.5 216 75.5
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 1.7e-92 344.4 239 70.3
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 2.3e-92 344.0 310 59.0
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.6e-90 337.8 225 72.9
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 8.9e-89 332.0 287 58.9
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 2.2e-87 327.4 203 77.3
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 9.2e-86 322.0 485 38.1
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.5e-83 314.7 309 53.4
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.1e-73 282.0 187 75.4
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 5.4e-70 269.6 300 46.3
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 4.3e-67 260.0 499 33.7
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 4.3e-67 260.0 168 75.6
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 2.1e-61 241.1 505 33.5
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.5e-59 234.2 295 47.1
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 9.9e-56 222.2 183 65.6
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.3e-55 221.9 152 71.1
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.6e-53 214.9 154 71.4
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.8e-50 204.1 304 42.4
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.6e-42 178.3 114 75.4
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 8.1e-42 176.0 125 64.8
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 3.8e-39 167.2 124 64.5
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.0e-36 159.1 166 47.0
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 9.0e-33 146.0 80 85.0
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.2e-32 145.6 88 77.3
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 1.7e-31 141.7 153 51.0
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 2.9e-31 141.0 92 64.1
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 3.2e-30 137.5 82 74.4
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 4.2e-30 137.1 354 32.8
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 5.5e-30 136.7 102 70.6
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.7e-29 134.4 76 82.9
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 2.3e-28 131.3 350 31.4
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 4.3e-27 127.1 77 77.9
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 5.9e-24 116.7 64 85.9
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 1.4e-22 112.1 95 60.0
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 3.2e-22 110.9 80 61.2
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 4.2e-22 110.5 133 46.6
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.6e-21 108.6 64 76.6
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 4.6e-21 107.1 83 65.1
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 1.3e-20 105.5 80 67.5
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 8.7e-20 102.8 65 69.2
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 1.9e-19 101.7 113 48.7
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 4.8e-18 97.1 57 75.4
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 2.1e-13 81.6 93 45.2
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.8e-12 78.6 162 36.4
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 7.4e-11 73.2 48 72.9
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.8e-10 70.5 111 42.3
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 4.1e-09 67.4 51 58.8
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.2e-06 57.8 155 31.0


User provided reference genes

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