Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 3.7e-94 348.2 175 100.0
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 1.2e-57 226.9 203 62.6
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 1.4e-56 223.4 203 59.6
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 1.7e-51 206.5 205 53.7
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 2.5e-50 202.6 206 51.9
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 1.2e-49 200.3 205 51.7
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 2.2e-46 189.5 151 69.5
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 2.8e-46 189.1 203 53.7
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 3.7e-46 188.7 143 71.3
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.8e-45 186.4 146 69.9
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 9.1e-45 184.1 144 70.1
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 2.9e-38 162.5 202 44.6
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 8.3e-38 161.0 203 46.3
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 7.0e-37 157.9 203 45.3
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 8.0e-33 144.4 203 41.9
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 4.0e-32 142.1 221 42.1
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 2.0e-31 139.8 211 43.1
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 2.6e-31 139.4 207 42.0
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 3.7e-30 135.6 205 38.5
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 6.4e-30 134.8 207 41.5
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 8.3e-30 134.4 205 39.5
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 5.4e-29 131.7 144 52.8
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 1.0e-27 127.5 203 39.4
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 1.0e-27 127.5 188 41.5
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 5.0e-27 125.2 206 37.9
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 1.1e-26 124.0 143 50.3
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.1e-26 124.0 143 50.3
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 1.2e-25 120.6 203 36.5
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 1.6e-25 120.2 202 36.6
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 6.2e-25 118.2 81 70.4
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 6.8e-24 114.8 206 35.9
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 1.5e-23 113.6 202 35.6
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 4.4e-23 112.1 202 36.1
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 5.8e-23 111.7 192 38.5
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 2.9e-22 109.4 202 35.6
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 6.4e-22 108.2 97 50.5
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 1.1e-21 107.5 205 33.7
Lj5P156T63 Lonicera japonica HOM05D006707 ORTHO05D008243 2.4e-21 106.3 72 70.8
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 5.4e-21 105.1 146 43.8
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.2e-20 104.0 205 33.2
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 3.9e-19 99.0 82 61.0
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 5.1e-19 98.6 88 55.7
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 1.5e-18 97.1 170 40.0
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 4.7e-17 92.0 202 33.2
BraA05t22010Z Brassica rapa HOM05D006707 ORTHO05D008243 1.4e-16 90.5 74 55.4
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 2.0e-15 86.7 206 31.1
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 3.4e-15 85.9 82 53.7
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 1.3e-14 84.0 202 32.2
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 1.3e-14 84.0 206 31.6
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 3.2e-13 79.3 205 29.8
RhsimUnG0220500 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.2e-12 77.4 50 70.0
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 2.1e-12 76.6 104 45.2
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 1.3e-11 73.9 95 46.3
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 3.0e-11 72.8 101 42.6
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 5.1e-11 72.0 101 43.6
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 6.6e-11 71.6 101 42.6
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 1.1e-10 70.9 101 43.6
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 1.1e-10 70.9 101 43.6
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 1.1e-10 70.9 51 64.7
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 2.5e-10 69.7 70 51.4
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 2.5e-10 69.7 203 29.6
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 1.6e-09 67.0 41 78.0
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 2.8e-09 66.2 49 59.2
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 2.8e-09 66.2 142 33.8
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 4.7e-09 65.5 40 75.0
PGR031G1457 Punica granatum HOM05D005973 ORTHO05D007285 6.2e-09 65.1 172 25.6
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 8.1e-09 64.7 44 70.5
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 1.4e-08 63.9 48 60.4
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 1.8e-08 63.5 202 27.7
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 3.1e-08 62.8 47 59.6
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 4.0e-08 62.4 59 50.8
Rhsim10G0193900 Rhododendron simsii HOM05D006556 ORTHO05D008146 6.8e-08 61.6 138 31.2
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 6.8e-08 61.6 34 79.4
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 8.9e-08 61.2 105 40.0
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 8.9e-08 61.2 208 24.5
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 8.9e-08 61.2 41 68.3
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 1.5e-07 60.5 97 37.1
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 1.5e-07 60.5 83 42.2
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 2.0e-07 60.1 39 71.8
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 2.0e-07 60.1 175 26.3
Atru.BG.218.p Acer truncatum HOM05D000855 ORTHO05D008530 4.4e-07 58.9 177 24.9
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 5.8e-07 58.5 32 81.2
Sed0026458 Sechium edule HOM05D008684 ORTHO05D010796 5.8e-07 58.5 132 28.8
Lalb_Chr01g0001971 Lupinus albus HOM05D002890 ORTHO05D009847 7.6e-07 58.2 130 26.2
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 7.6e-07 58.2 175 25.7
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 7.6e-07 58.2 173 24.3
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 1.3e-06 57.4 38 71.1
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 1.7e-06 57.0 45 57.8
MELO3C017354.2 Cucumis melo HOM05D006707 ORTHO05D008243 1.7e-06 57.0 40 65.0
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 1.7e-06 57.0 38 65.8
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 1.7e-06 57.0 38 65.8
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 1.7e-06 57.0 190 23.7
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 1.7e-06 57.0 190 23.7
Lj4g0000542 Lotus japonicus HOM05D002890 ORTHO05D009847 1.7e-06 57.0 130 27.7
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 2.2e-06 56.6 34 76.5
HPP92_021332 Vanilla planifolia HOM05D007212 ORTHO05D000003 2.2e-06 56.6 149 28.9
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 3.8e-06 55.8 40 65.0
PGR042G0565 Punica granatum HOM05D002890 ORTHO05D009847 3.8e-06 55.8 140 25.0
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 4.9e-06 55.5 164 26.8
Ciclev10011148m.g Citrus clementina HOM05D000855 ORTHO05D008530 6.4e-06 55.1 175 23.4
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 6.4e-06 55.1 40 65.0
Migut.O00416 Erythranthe guttata HOM05D007570 ORTHO05D009365 8.4e-06 54.7 178 22.5


User provided reference genes

Program Settings