Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 0.0e+00 1149.4 571 100.0
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 5.1e-286 987.3 527 94.3
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 5.1e-286 987.3 527 94.3
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 7.3e-285 983.4 527 93.7
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 6.2e-284 980.3 527 93.7
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 3.3e-277 958.0 526 92.2
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 8.1e-276 953.4 527 91.8
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.8e-275 952.2 525 91.6
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 9.3e-272 939.9 527 90.7
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 1.8e-270 935.6 526 90.5
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 2.3e-270 935.3 527 90.3
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 2.3e-270 935.3 527 90.3
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 2.3e-270 935.3 527 90.3
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.5e-269 932.6 527 89.9
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 4.2e-264 914.4 527 89.0
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 4.2e-264 914.4 527 89.0
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 4.2e-264 914.4 527 89.0
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 4.2e-264 914.4 527 89.0
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 4.2e-264 914.4 527 89.0
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 1.6e-263 912.5 524 89.3
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 3.5e-263 911.4 524 88.9
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 2.5e-261 905.2 527 87.9
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 1.3e-254 882.9 498 90.4
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.8e-254 882.5 498 90.4
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.8e-254 882.5 498 90.4
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.8e-254 882.5 498 90.4
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.2e-247 859.8 498 89.0
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 1.6e-247 859.4 498 88.6
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 1.3e-244 849.7 498 88.2
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.7e-244 848.2 508 86.4
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.1e-243 845.1 503 86.9
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 5.3e-243 844.3 531 84.4
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 7.2e-240 833.9 528 83.1
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 5.1e-238 827.8 525 81.7
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 8.8e-230 800.4 456 89.7
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.0e-229 799.3 527 79.1
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 3.3e-229 798.5 477 87.0
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 1.9e-224 782.7 464 87.5
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 8.0e-223 777.3 488 83.6
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 1.8e-222 776.2 522 79.5
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 5.0e-217 758.1 479 82.5
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 9.5e-208 727.2 421 89.1
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 3.6e-207 725.3 420 89.0
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 4.7e-207 724.9 456 83.6
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 4.0e-206 721.8 430 87.0
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 1.3e-201 706.8 451 82.5
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 5.1e-185 651.7 391 86.4
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 4.0e-182 642.1 461 75.1
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 3.2e-179 632.5 454 75.8
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 2.7e-170 602.8 354 86.7
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.7e-164 583.6 456 71.1
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 1.1e-163 580.9 376 81.1
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 3.5e-162 575.9 299 95.0
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 8.1e-159 564.7 498 63.9
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.4e-149 532.7 284 93.3
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 4.5e-149 532.3 541 58.0
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.3e-145 520.0 284 91.9
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 2.8e-143 513.1 253 99.2
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 1.4e-139 500.7 297 88.2
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 7.4e-136 488.4 331 78.9
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 6.3e-135 485.3 253 95.3
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.4e-134 483.4 354 72.6
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 1.4e-131 474.2 253 93.7
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 9.7e-128 461.5 250 92.0
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 2.0e-125 453.8 344 71.8
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 4.5e-125 452.6 274 83.9
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 4.5e-125 452.6 274 83.9
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 1.3e-119 434.5 635 46.0
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 8.8e-113 411.8 283 77.0
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.1e-110 403.3 265 81.5
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.7e-108 397.5 288 76.0
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 3.2e-107 393.3 242 84.7
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 4.4e-104 382.9 235 83.0
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 7.7e-101 372.1 198 94.9
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 3.2e-99 366.7 200 93.5
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 3.6e-98 363.2 193 94.8
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 7.5e-96 355.5 188 93.6
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 7.5e-96 355.5 188 93.6
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 7.5e-96 355.5 188 93.6
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 3.1e-94 350.1 188 92.0
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 6.6e-92 342.4 188 90.4
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 9.5e-91 338.6 411 47.9
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 8.0e-90 335.5 222 81.5
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 1.4e-86 324.7 426 50.0
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 5.4e-86 322.8 480 44.4
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 2.0e-85 320.9 161 99.4
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.1e-78 298.5 354 52.8
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 2.4e-78 297.4 197 77.7
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 1.0e-76 292.0 266 66.9
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.4e-73 281.6 263 59.7
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 8.3e-71 272.3 308 51.6
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 9.2e-70 268.9 410 46.1
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 5.6e-67 259.6 373 38.3
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 3.3e-59 233.8 118 98.3
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 2.8e-58 230.7 180 68.9
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 2.8e-58 230.7 244 56.1
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 2.9e-55 220.7 134 75.4
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-54 218.8 183 66.7
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 3.5e-53 213.8 234 57.3
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 2.3e-52 211.1 148 77.0
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.3e-51 207.2 159 71.1
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 4.3e-51 206.8 175 64.6
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 5.3e-49 199.9 121 85.1
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.5e-48 196.8 105 89.5
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.5e-48 196.8 105 89.5
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 5.8e-48 196.4 100 96.0
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.7e-47 194.9 120 84.2
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 4.9e-47 193.4 110 86.4
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 7.1e-46 189.5 260 46.9
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 2.1e-45 188.0 104 88.5
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 2.7e-45 187.6 173 60.1
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 1.3e-44 185.3 109 82.6
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 3.6e-42 177.2 95 95.8
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 3.4e-40 170.6 94 89.4
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 5.8e-40 169.9 91 94.5
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 9.9e-40 169.1 141 66.7
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 4.9e-39 166.8 93 88.2
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.9e-38 164.9 104 77.9
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 2.7e-37 161.0 90 87.8
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 2.7e-37 161.0 132 66.7
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 1.3e-34 152.1 98 78.6
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 1.3e-34 152.1 92 81.5
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 2.8e-34 151.0 73 98.6
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 8.1e-34 149.4 170 57.1
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 1.1e-33 149.1 124 64.5
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 1.2e-32 145.6 119 65.5
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 1.0e-31 142.5 127 63.8
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 6.5e-31 139.8 85 83.5
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 1.4e-30 138.7 227 42.3
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 1.8e-28 131.7 101 68.3
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 3.0e-28 131.0 105 67.6
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 4.3e-27 127.1 63 95.2
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 9.0e-25 119.4 56 98.2
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 7.6e-24 116.3 107 63.6
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.0e-23 113.6 76 75.0
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 2.5e-22 111.3 215 36.7
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 1.6e-21 108.6 109 56.0
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 3.9e-20 104.0 68 79.4
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 5.1e-20 103.6 65 80.0
C04p32420 Brassica napus HOM05D004537 ORTHO05D005492 1.8e-17 95.1 70 72.9
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 5.3e-17 93.6 47 95.7
EL10Ac5g12760 Beta vulgaris HOM05D004537 ORTHO05D005492 1.0e-15 89.4 46 89.1
TPR.G39033 Trifolium pratense HOM05D004537 ORTHO05D005492 2.5e-14 84.7 50 82.0
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 3.2e-14 84.3 76 63.2
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 4.2e-14 84.0 53 77.4
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 5.5e-14 83.6 50 80.0
Nitab4.5_0001127g0350 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.2e-13 82.4 42 90.5
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 3.6e-13 80.9 57 73.7
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 7.9e-13 79.7 50 80.0
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 7.9e-13 79.7 41 92.7
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 1.4e-12 79.0 48 83.3
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 2.0e-11 75.1 80 55.0
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 1.4e-09 68.9 34 94.1
BolC4t24790H Brassica oleracea HOM05D004537 ORTHO05D005492 6.9e-09 66.6 35 85.7
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 9.1e-09 66.2 35 88.6
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.0e-08 65.1 50 66.0


User provided reference genes

Program Settings